RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 PKD1L1Q8TDX9 2849 aa2.94□□□□□ -1.94
CNOT1-216ENST00000569240 SPRR5A0A1B0GTR4 108 aa2.94□□□□□ -1.94
CNOT1-216ENST00000569240 KRTAP10-4P60372 401 aaPredicted RBP2.93□□□□□ -1.94
CNOT1-216ENST00000569240 PKHD1P08F94 4074 aa2.92□□□□□ -1.94
CNOT1-216ENST00000569240 MT1HL1P0DM35 61 aa2.92□□□□□ -1.94
CNOT1-216ENST00000569240 ALMS1Q8TCU4 4167 aa2.92□□□□□ -1.94
CNOT1-216ENST00000569240 KRTAP8-1Q8IUC2 63 aa2.9□□□□□ -1.94
CNOT1-216ENST00000569240 VWFP04275 2813 aa2.87□□□□□ -1.95
CNOT1-216ENST00000569240 MXRA5Q9NR99 2828 aa2.87□□□□□ -1.95
CNOT1-216ENST00000569240 DNAH3Q8TD57 4116 aa2.87□□□□□ -1.95
CNOT1-216ENST00000569240 ANK3Q12955 4377 aaKnown RBP2.82□□□□□ -1.96
CNOT1-216ENST00000569240 SPRR2GQ9BYE4 73 aa2.81□□□□□ -1.96
CNOT1-216ENST00000569240 MEGF8Q7Z7M0 2845 aa2.79□□□□□ -1.96
CNOT1-216ENST00000569240 LORP23490 312 aaPredicted RBP2.78□□□□□ -1.96
CNOT1-216ENST00000569240 PRKDCP78527 4128 aaKnown RBP2.78□□□□□ -1.96
CNOT1-216ENST00000569240 DNAH2Q9P225 4427 aa2.77□□□□□ -1.97
CNOT1-216ENST00000569240 HUWE1Q7Z6Z7 4374 aaKnown RBP2.76□□□□□ -1.97
CNOT1-216ENST00000569240 FBN3Q75N90 2809 aa2.76□□□□□ -1.97
CNOT1-216ENST00000569240 KRTAP10-5P60370 271 aa2.75□□□□□ -1.97
CNOT1-216ENST00000569240 LCE3CQ5T5A8 94 aa2.75□□□□□ -1.97
CNOT1-216ENST00000569240 DNAH6Q9C0G6 4158 aa2.72□□□□□ -1.97
CNOT1-216ENST00000569240 DNAH10Q8IVF4 4471 aa2.71□□□□□ -1.97
CNOT1-216ENST00000569240 MYCBP2O75592 4640 aa2.7□□□□□ -1.98
CNOT1-216ENST00000569240 VPS13BQ7Z7G8 4022 aa2.7□□□□□ -1.98
CNOT1-216ENST00000569240 DNAH11Q96DT5 4516 aa2.69□□□□□ -1.98
CNOT1-216ENST00000569240 RYR1P21817 5038 aa2.64□□□□□ -1.99
CNOT1-216ENST00000569240 KRTAP19-8Q3LI54 63 aa2.62□□□□□ -1.99
CNOT1-216ENST00000569240 BIRC6Q9NR09 4857 aa2.6□□□□□ -1.99
CNOT1-216ENST00000569240 DNAH1Q9P2D7 4330 aa2.6□□□□□ -1.99
CNOT1-216ENST00000569240 CRCT1Q9UGL9 99 aa2.59□□□□□ -1.99
CNOT1-216ENST00000569240 KRTAP19-5Q3LI72 72 aa2.57□□□□□ -2
CNOT1-216ENST00000569240 RYR2Q92736 4967 aa2.57□□□□□ -2
CNOT1-216ENST00000569240 MT2AP02795 61 aa2.55□□□□□ -2
CNOT1-216ENST00000569240 DNAH9Q9NYC9 4486 aa2.55□□□□□ -2
CNOT1-216ENST00000569240 FAT2Q9NYQ8 4349 aa2.55□□□□□ -2
CNOT1-216ENST00000569240 KRTAP12-4P60329 112 aa2.54□□□□□ -2
CNOT1-216ENST00000569240 MT3P25713 68 aa2.52□□□□□ -2.01
CNOT1-216ENST00000569240 HERC1Q15751 4861 aa2.52□□□□□ -2.01
CNOT1-216ENST00000569240 PKHD1L1Q86WI1 4243 aa2.51□□□□□ -2.01
CNOT1-216ENST00000569240 KRTAP10-7P60409 375 aaPredicted RBP2.49□□□□□ -2.01
CNOT1-216ENST00000569240 MT1HP80294 61 aa2.48□□□□□ -2.01
CNOT1-216ENST00000569240 PCLOQ9Y6V0 5065 aa2.48□□□□□ -2.01
CNOT1-216ENST00000569240 KRTAP4-1Q9BYQ7 146 aa2.47□□□□□ -2.01
CNOT1-216ENST00000569240 KRTAP19-1Q8IUB9 90 aa2.47□□□□□ -2.01
CNOT1-216ENST00000569240 LRP1Q07954 4544 aaKnown RBP2.46□□□□□ -2.02
CNOT1-216ENST00000569240 LCE3EQ5T5B0 92 aa2.45□□□□□ -2.02
CNOT1-216ENST00000569240 DYNC2H1Q8NCM8 4307 aaKnown RBP2.45□□□□□ -2.02
CNOT1-216ENST00000569240 DNAH17Q9UFH2 4485 aa2.44□□□□□ -2.02
CNOT1-216ENST00000569240 MT1FP04733 61 aa2.44□□□□□ -2.02
CNOT1-216ENST00000569240 HSPG2P98160 4391 aa2.43□□□□□ -2.02
CNOT1-216ENST00000569240 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
CNOT1-216ENST00000569240 MT1XP80297 61 aa2.41□□□□□ -2.02
CNOT1-216ENST00000569240 PLECQ15149 4684 aaKnown RBP2.41□□□□□ -2.02
CNOT1-216ENST00000569240 DYNC1H1Q14204 4646 aaKnown RBP2.4□□□□□ -2.02
CNOT1-216ENST00000569240 MT1GP13640 62 aa2.4□□□□□ -2.03
CNOT1-216ENST00000569240 MT1LQ93083 61 aa2.39□□□□□ -2.03
CNOT1-216ENST00000569240 APOBP04114 4563 aaKnown RBP2.39□□□□□ -2.03
CNOT1-216ENST00000569240 HERC2O95714 4834 aa2.39□□□□□ -2.03
CNOT1-216ENST00000569240 LRP1BQ9NZR2 4599 aa2.38□□□□□ -2.03
CNOT1-216ENST00000569240 HYDINQ4G0P3 5121 aa2.38□□□□□ -2.03
CNOT1-216ENST00000569240 KMT2CQ8NEZ4 4911 aaKnown RBP2.38□□□□□ -2.03
CNOT1-216ENST00000569240 FAT1Q14517 4588 aa2.37□□□□□ -2.03
CNOT1-216ENST00000569240 DNAH5Q8TE73 4624 aa2.37□□□□□ -2.03
CNOT1-216ENST00000569240 DNAH8Q96JB1 4490 aa2.37□□□□□ -2.03
CNOT1-216ENST00000569240 SACSQ9NZJ4 4579 aa2.36□□□□□ -2.03
CNOT1-216ENST00000569240 MT1BP07438 61 aa2.34□□□□□ -2.03
CNOT1-216ENST00000569240 TNXBP22105 4242 aa2.34□□□□□ -2.03
CNOT1-216ENST00000569240 KRTAP4-5Q9BYR2 181 aa2.34□□□□□ -2.03
CNOT1-216ENST00000569240 ABCA13Q86UQ4 5058 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 KRTAP2-3P0C7H8 128 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 KRTAP2-4Q9BYR9 128 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 KRTAP2-1Q9BYU5 128 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 LPAP08519 4548 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 MT1EP04732 61 aa2.32□□□□□ -2.04
CNOT1-216ENST00000569240 DNHD1Q96M86 4753 aa2.31□□□□□ -2.04
CNOT1-216ENST00000569240 KIAA1109Q2LD37 5005 aa2.31□□□□□ -2.04
CNOT1-216ENST00000569240 FAT3Q8TDW7 4589 aa2.3□□□□□ -2.04
CNOT1-216ENST00000569240 RYR3Q15413 4870 aa2.3□□□□□ -2.04
CNOT1-216ENST00000569240 LCE3BQ5TA77 95 aa2.27□□□□□ -2.05
CNOT1-216ENST00000569240 FLGP20930 4061 aaPredicted RBP2.26□□□□□ -2.05
CNOT1-216ENST00000569240 SPRR2FQ96RM1 72 aa2.26□□□□□ -2.05
CNOT1-216ENST00000569240 KRTAP9-8Q9BYQ0 159 aa2.22□□□□□ -2.05
CNOT1-216ENST00000569240 PKD1P98161 4303 aa2.22□□□□□ -2.05
CNOT1-216ENST00000569240 KRTAP19-3Q7Z4W3 81 aa2.21□□□□□ -2.05
CNOT1-216ENST00000569240 SPRR2AP35326 72 aa2.21□□□□□ -2.06
CNOT1-216ENST00000569240 PRM1P04553 51 aa2.2□□□□□ -2.06
CNOT1-216ENST00000569240 MT1AP04731 61 aa2.2□□□□□ -2.06
CNOT1-216ENST00000569240 KRTAP9-3Q9BYQ3 159 aa2.19□□□□□ -2.06
CNOT1-216ENST00000569240 HMCN2Q8NDA2 5059 aa2.19□□□□□ -2.06
CNOT1-216ENST00000569240 LCE2DQ5TA82 110 aaPredicted RBP2.18□□□□□ -2.06
CNOT1-216ENST00000569240 EPPK1P58107 5090 aaKnown RBP2.17□□□□□ -2.06
CNOT1-216ENST00000569240 STARD9Q9P2P6 4700 aa2.17□□□□□ -2.06
CNOT1-216ENST00000569240 SPRR2BP35325 72 aa2.16□□□□□ -2.06
CNOT1-216ENST00000569240 KRTAP19-2Q3LHN2 52 aa2.14□□□□□ -2.07
CNOT1-216ENST00000569240 LCE2CQ5TA81 110 aa2.14□□□□□ -2.07
CNOT1-216ENST00000569240 SPRR2EP22531 72 aa2.13□□□□□ -2.07
CNOT1-216ENST00000569240 MT1MQ8N339 61 aa2.12□□□□□ -2.07
CNOT1-216ENST00000569240 LCE2BO14633 110 aa2.11□□□□□ -2.07
CNOT1-216ENST00000569240 RNF213Q63HN8 5207 aa2.1□□□□□ -2.07
CNOT1-216ENST00000569240 SPRR2DP22532 72 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms