RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 MT1BP07438 61 aa8.25□□□□□ -1.09
CLN3-221ENST00000566057 ATOX1O00244 68 aa8.24□□□□□ -1.09
CLN3-221ENST00000566057 KLKP1Q107X0 134 aa8.23□□□□□ -1.09
CLN3-221ENST00000566057 KRTAP19-8Q3LI54 63 aa8.23□□□□□ -1.09
CLN3-221ENST00000566057 Q5VV11 94 aa8.2□□□□□ -1.1
CLN3-221ENST00000566057 LINC00208Q96KT6 92 aa8.16□□□□□ -1.1
CLN3-221ENST00000566057 OCR1Q9BZK8 76 aa8.15□□□□□ -1.1
CLN3-221ENST00000566057 A6NN06 94 aa8.12□□□□□ -1.11
CLN3-221ENST00000566057 NDUFC1O43677 76 aa8.12□□□□□ -1.11
CLN3-221ENST00000566057 IMUPQ9GZP8 106 aa8.11□□□□□ -1.11
CLN3-221ENST00000566057 KRTAP6-3Q3LI67 103 aa8.1□□□□□ -1.11
CLN3-221ENST00000566057 A8MUN3 132 aa8.09□□□□□ -1.11
CLN3-221ENST00000566057 CRIPTQ9P021 101 aa8.09□□□□□ -1.11
CLN3-221ENST00000566057 MP68P56378 58 aa8.07□□□□□ -1.12
CLN3-221ENST00000566057 H0YAA0 97 aa8.05□□□□□ -1.12
CLN3-221ENST00000566057 KRTAP10-5P60370 271 aa8.05□□□□□ -1.12
CLN3-221ENST00000566057 J3QR89 54 aa8.02□□□□□ -1.13
CLN3-221ENST00000566057 ADM2Q7Z4H4 148 aa8□□□□□ -1.13
CLN3-221ENST00000566057 H3BPC8 53 aa7.95□□□□□ -1.14
CLN3-221ENST00000566057 SCGB1A1P11684 91 aa7.94□□□□□ -1.14
CLN3-221ENST00000566057 DMAC1Q96GE9 116 aa7.89□□□□□ -1.15
CLN3-221ENST00000566057 P0C880 135 aa7.84□□□□□ -1.15
CLN3-221ENST00000566057 NEBP20929 6669 aa7.83□□□□□ -1.16
CLN3-221ENST00000566057 MT-ATP8P03928 68 aa7.82□□□□□ -1.16
CLN3-221ENST00000566057 KRTAP3-2Q9BYR7 98 aa7.79□□□□□ -1.16
CLN3-221ENST00000566057 R4GN34 69 aa7.77□□□□□ -1.17
CLN3-221ENST00000566057 MT1XP80297 61 aa7.74□□□□□ -1.17
CLN3-221ENST00000566057 C20orf197Q8N268 126 aa7.74□□□□□ -1.17
CLN3-221ENST00000566057 MUC12Q9UKN1 5478 aa7.74□□□□□ -1.17
CLN3-221ENST00000566057 TRAV7A0A075B6U4 112 aa7.73□□□□□ -1.17
CLN3-221ENST00000566057 KRTAP5-9P26371 169 aa7.73□□□□□ -1.17
CLN3-221ENST00000566057 K7ERU9 68 aa7.72□□□□□ -1.17
CLN3-221ENST00000566057 PLAC4Q8WY50 150 aa7.72□□□□□ -1.17
CLN3-221ENST00000566057 M0QZ58 72 aa7.71□□□□□ -1.18
CLN3-221ENST00000566057 ACYP2P14621 99 aa7.69□□□□□ -1.18
CLN3-221ENST00000566057 SMIM20Q8N5G0 67 aa7.69□□□□□ -1.18
CLN3-221ENST00000566057 PRO2289Q9P1D8 64 aa7.69□□□□□ -1.18
CLN3-221ENST00000566057 KMT2DO14686 5537 aa7.63□□□□□ -1.19
CLN3-221ENST00000566057 LINC01554Q52M75 96 aa7.62□□□□□ -1.19
CLN3-221ENST00000566057 SNURFQ9Y675 71 aa7.6□□□□□ -1.19
CLN3-221ENST00000566057 SPTSSBQ8NFR3 76 aa7.56□□□□□ -1.2
CLN3-221ENST00000566057 MDN1Q9NU22 5596 aa7.54□□□□□ -1.2
CLN3-221ENST00000566057 CHKB-CPT1BH3BT56 60 aa7.52□□□□□ -1.21
CLN3-221ENST00000566057 KRTAP12-2P59991 146 aa7.52□□□□□ -1.21
CLN3-221ENST00000566057 SPRR2FQ96RM1 72 aa7.5□□□□□ -1.21
CLN3-221ENST00000566057 KRTAP20-1Q3LI63 56 aa7.49□□□□□ -1.21
CLN3-221ENST00000566057 SPANXA2-OT1Q8N9U9 137 aa7.47□□□□□ -1.21
CLN3-221ENST00000566057 KRTAP8-1Q8IUC2 63 aa7.46□□□□□ -1.22
CLN3-221ENST00000566057 SERP2Q8N6R1 65 aa7.46□□□□□ -1.22
CLN3-221ENST00000566057 KRTAP4-8A0A0G2JLE6 195 aa7.43□□□□□ -1.22
CLN3-221ENST00000566057 KRTAP4-8Q9BYQ9 185 aa7.43□□□□□ -1.22
CLN3-221ENST00000566057 SPRR2EP22531 72 aa7.39□□□□□ -1.23
CLN3-221ENST00000566057 SPRR2BP35325 72 aa7.39□□□□□ -1.23
CLN3-221ENST00000566057 SPRR2AP35326 72 aa7.39□□□□□ -1.23
CLN3-221ENST00000566057 KRTAP10-7P60409 375 aaPredicted RBP7.39□□□□□ -1.23
CLN3-221ENST00000566057 KRTAP10-12P60413 245 aa7.34□□□□□ -1.23
CLN3-221ENST00000566057 KRTAP13-4Q3LI77 160 aa7.34□□□□□ -1.23
CLN3-221ENST00000566057 LCE1AQ5T7P2 110 aa7.31□□□□□ -1.24
CLN3-221ENST00000566057 KRTAP2-3P0C7H8 128 aa7.3□□□□□ -1.24
CLN3-221ENST00000566057 KRTAP2-4Q9BYR9 128 aa7.3□□□□□ -1.24
CLN3-221ENST00000566057 COA5Q86WW8 74 aa7.28□□□□□ -1.24
CLN3-221ENST00000566057 COX7CP15954 63 aa7.22□□□□□ -1.25
CLN3-221ENST00000566057 CYSTM1Q9H1C7 97 aa7.18□□□□□ -1.26
CLN3-221ENST00000566057 H7BZZ5 65 aa7.14□□□□□ -1.27
CLN3-221ENST00000566057 SPRR2DP22532 72 aa7.14□□□□□ -1.27
CLN3-221ENST00000566057 CAMK2N1Q7Z7J9 78 aa7.13□□□□□ -1.27
CLN3-221ENST00000566057 SEC61GP60059 68 aa7.11□□□□□ -1.27
CLN3-221ENST00000566057 SERP1Q9Y6X1 66 aa7.11□□□□□ -1.27
CLN3-221ENST00000566057 A0A0D9SG42 100 aa7.08□□□□□ -1.28
CLN3-221ENST00000566057 SPATA8Q6RVD6 105 aa7.08□□□□□ -1.28
CLN3-221ENST00000566057 KRTAP2-2Q9BYT5 123 aa7.06□□□□□ -1.28
CLN3-221ENST00000566057 KRTAP2-1Q9BYU5 128 aa7.06□□□□□ -1.28
CLN3-221ENST00000566057 A0A1B0GU33 70 aa7.03□□□□□ -1.28
CLN3-221ENST00000566057 SPINT4Q6UDR6 99 aa6.96□□□□□ -1.3
CLN3-221ENST00000566057 LCE3BQ5TA77 95 aa6.95□□□□□ -1.3
CLN3-221ENST00000566057 ANAPC13Q9BS18 74 aa6.95□□□□□ -1.3
CLN3-221ENST00000566057 KRTAP12-1P59990 96 aa6.94□□□□□ -1.3
CLN3-221ENST00000566057 KRTAP19-7Q3SYF9 63 aa6.92□□□□□ -1.3
CLN3-221ENST00000566057 A0A1B0GU69 56 aa6.89□□□□□ -1.31
CLN3-221ENST00000566057 CCDC179H3BU77 68 aa6.85□□□□□ -1.31
CLN3-221ENST00000566057 MT1EP04732 61 aa6.85□□□□□ -1.31
CLN3-221ENST00000566057 A8MU10 97 aa6.82□□□□□ -1.32
CLN3-221ENST00000566057 SMIM26A0A096LP01 95 aa6.81□□□□□ -1.32
CLN3-221ENST00000566057 LCE5AQ5TCM9 118 aa6.81□□□□□ -1.32
CLN3-221ENST00000566057 KRTAP19-3Q7Z4W3 81 aa6.77□□□□□ -1.33
CLN3-221ENST00000566057 KRTAP19-5Q3LI72 72 aa6.75□□□□□ -1.33
CLN3-221ENST00000566057 DSTQ03001 7570 aaKnown RBP6.74□□□□□ -1.33
CLN3-221ENST00000566057 ATP5EP56381 51 aaPredicted RBP6.7□□□□□ -1.34
CLN3-221ENST00000566057 C10orf95Q9H7T3 257 aa6.66□□□□□ -1.34
CLN3-221ENST00000566057 PRR15LQ9BU68 103 aa6.64□□□□□ -1.35
CLN3-221ENST00000566057 LINC01558Q9Y6Z2 57 aa6.63□□□□□ -1.35
CLN3-221ENST00000566057 MT1GP13640 62 aa6.62□□□□□ -1.35
CLN3-221ENST00000566057 SVIPQ8NHG7 77 aa6.6□□□□□ -1.35
CLN3-221ENST00000566057 LCE3AQ5TA76 89 aa6.59□□□□□ -1.35
CLN3-221ENST00000566057 TNP1P09430 55 aa6.58□□□□□ -1.36
CLN3-221ENST00000566057 MT1LQ93083 61 aa6.54□□□□□ -1.36
CLN3-221ENST00000566057 TMEM258P61165 79 aa6.53□□□□□ -1.36
CLN3-221ENST00000566057 PP632Q6XCG6 107 aa6.52□□□□□ -1.37
CLN3-221ENST00000566057 MT1MQ8N339 61 aa6.52□□□□□ -1.37
CLN3-221ENST00000566057 KRTAP4-9Q9BYQ8 210 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms