RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 A0A087WVE0 104 aa6.96□□□□□ -1.3
CDH3-204ENST00000565453 TRAV22A0A0B4J277 110 aa6.95□□□□□ -1.3
CDH3-204ENST00000565453 LOC101927531A0A1B0GV80 90 aa6.93□□□□□ -1.3
CDH3-204ENST00000565453 KRTAP10-5P60370 271 aa6.93□□□□□ -1.3
CDH3-204ENST00000565453 ACYP1P07311 99 aa6.9□□□□□ -1.3
CDH3-204ENST00000565453 FAM240AA0A1B0GVK7 77 aa6.87□□□□□ -1.31
CDH3-204ENST00000565453 ATP5EP2Q5VTU8 51 aa6.87□□□□□ -1.31
CDH3-204ENST00000565453 CRIPTQ9P021 101 aa6.87□□□□□ -1.31
CDH3-204ENST00000565453 UQCRQO14949 82 aa6.85□□□□□ -1.31
CDH3-204ENST00000565453 NEBP20929 6669 aa6.83□□□□□ -1.32
CDH3-204ENST00000565453 H0Y9P7 68 aa6.83□□□□□ -1.32
CDH3-204ENST00000565453 IMUPQ9GZP8 106 aa6.83□□□□□ -1.32
CDH3-204ENST00000565453 HIST1H4AP62805 103 aaKnown RBP6.82□□□□□ -1.32
CDH3-204ENST00000565453 ATOX1O00244 68 aa6.81□□□□□ -1.32
CDH3-204ENST00000565453 H0YAA0 97 aa6.8□□□□□ -1.32
CDH3-204ENST00000565453 NDUFC1O43677 76 aa6.78□□□□□ -1.32
CDH3-204ENST00000565453 J3QR89 54 aa6.76□□□□□ -1.33
CDH3-204ENST00000565453 A8MUN3 132 aa6.75□□□□□ -1.33
CDH3-204ENST00000565453 MUC12Q9UKN1 5478 aa6.74□□□□□ -1.33
CDH3-204ENST00000565453 KRTAP5-9P26371 169 aa6.74□□□□□ -1.33
CDH3-204ENST00000565453 LINC00643Q86TS7 51 aa6.74□□□□□ -1.33
CDH3-204ENST00000565453 LINC00208Q96KT6 92 aa6.71□□□□□ -1.34
CDH3-204ENST00000565453 ADM2Q7Z4H4 148 aa6.7□□□□□ -1.34
CDH3-204ENST00000565453 OCR1Q9BZK8 76 aa6.69□□□□□ -1.34
CDH3-204ENST00000565453 SMIM20Q8N5G0 67 aa6.66□□□□□ -1.34
CDH3-204ENST00000565453 MP68P56378 58 aa6.63□□□□□ -1.35
CDH3-204ENST00000565453 KMT2DO14686 5537 aa6.61□□□□□ -1.35
CDH3-204ENST00000565453 MT1XP80297 61 aa6.6□□□□□ -1.35
CDH3-204ENST00000565453 KRTAP20-1Q3LI63 56 aa6.6□□□□□ -1.35
CDH3-204ENST00000565453 ANAPC13Q9BS18 74 aa6.57□□□□□ -1.36
CDH3-204ENST00000565453 P0C880 135 aa6.56□□□□□ -1.36
CDH3-204ENST00000565453 PRO2289Q9P1D8 64 aa6.56□□□□□ -1.36
CDH3-204ENST00000565453 H3BPC8 53 aa6.55□□□□□ -1.36
CDH3-204ENST00000565453 MDN1Q9NU22 5596 aa6.55□□□□□ -1.36
CDH3-204ENST00000565453 DMAC1Q96GE9 116 aa6.54□□□□□ -1.36
CDH3-204ENST00000565453 RPS28P62857 69 aaKnown RBP6.53□□□□□ -1.36
CDH3-204ENST00000565453 PLAC4Q8WY50 150 aa6.53□□□□□ -1.36
CDH3-204ENST00000565453 R4GN34 69 aa6.52□□□□□ -1.37
CDH3-204ENST00000565453 SEC61GP60059 68 aa6.51□□□□□ -1.37
CDH3-204ENST00000565453 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
CDH3-204ENST00000565453 C20orf197Q8N268 126 aa6.49□□□□□ -1.37
CDH3-204ENST00000565453 SPRR2FQ96RM1 72 aa6.48□□□□□ -1.37
CDH3-204ENST00000565453 M0QZ58 72 aa6.47□□□□□ -1.37
CDH3-204ENST00000565453 KRTAP12-2P59991 146 aa6.46□□□□□ -1.38
CDH3-204ENST00000565453 PRO0628Q9UI54 55 aa6.43□□□□□ -1.38
CDH3-204ENST00000565453 KRTAP8-1Q8IUC2 63 aa6.42□□□□□ -1.38
CDH3-204ENST00000565453 V9GYY9 64 aa6.42□□□□□ -1.38
CDH3-204ENST00000565453 KRTAP2-3P0C7H8 128 aa6.41□□□□□ -1.38
CDH3-204ENST00000565453 SPRR2EP22531 72 aa6.41□□□□□ -1.38
CDH3-204ENST00000565453 SPRR2BP35325 72 aa6.41□□□□□ -1.38
CDH3-204ENST00000565453 SPRR2AP35326 72 aa6.41□□□□□ -1.38
CDH3-204ENST00000565453 KRTAP2-4Q9BYR9 128 aa6.41□□□□□ -1.38
CDH3-204ENST00000565453 TRAV7A0A075B6U4 112 aa6.38□□□□□ -1.39
CDH3-204ENST00000565453 LINC01554Q52M75 96 aa6.37□□□□□ -1.39
CDH3-204ENST00000565453 CCDC179H3BU77 68 aa6.36□□□□□ -1.39
CDH3-204ENST00000565453 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
CDH3-204ENST00000565453 KRTAP4-8A0A0G2JLE6 195 aa6.35□□□□□ -1.39
CDH3-204ENST00000565453 LCE1AQ5T7P2 110 aa6.35□□□□□ -1.39
CDH3-204ENST00000565453 KRTAP4-8Q9BYQ9 185 aa6.35□□□□□ -1.39
CDH3-204ENST00000565453 ACYP2P14621 99 aa6.32□□□□□ -1.4
CDH3-204ENST00000565453 KRTAP10-7P60409 375 aaPredicted RBP6.29□□□□□ -1.4
CDH3-204ENST00000565453 TMEM258P61165 79 aa6.29□□□□□ -1.4
CDH3-204ENST00000565453 KRTAP10-12P60413 245 aa6.27□□□□□ -1.41
CDH3-204ENST00000565453 SPTSSBQ8NFR3 76 aa6.25□□□□□ -1.41
CDH3-204ENST00000565453 KRTAP2-2Q9BYT5 123 aa6.2□□□□□ -1.42
CDH3-204ENST00000565453 KRTAP2-1Q9BYU5 128 aa6.2□□□□□ -1.42
CDH3-204ENST00000565453 SPRR2DP22532 72 aa6.19□□□□□ -1.42
CDH3-204ENST00000565453 CHKB-CPT1BH3BT56 60 aa6.18□□□□□ -1.42
CDH3-204ENST00000565453 COX7CP15954 63 aa6.16□□□□□ -1.42
CDH3-204ENST00000565453 SNURFQ9Y675 71 aa6.16□□□□□ -1.42
CDH3-204ENST00000565453 KRTAP13-4Q3LI77 160 aa6.11□□□□□ -1.43
CDH3-204ENST00000565453 SPANXA2-OT1Q8N9U9 137 aa6.11□□□□□ -1.43
CDH3-204ENST00000565453 SERP1Q9Y6X1 66 aa6.07□□□□□ -1.44
CDH3-204ENST00000565453 SMIM26A0A096LP01 95 aa6.05□□□□□ -1.44
CDH3-204ENST00000565453 PMAIP1Q13794 54 aa6.05□□□□□ -1.44
CDH3-204ENST00000565453 LCE3BQ5TA77 95 aa6.05□□□□□ -1.44
CDH3-204ENST00000565453 ATP5EP56381 51 aaPredicted RBP6.02□□□□□ -1.45
CDH3-204ENST00000565453 SERP2Q8N6R1 65 aa6.01□□□□□ -1.45
CDH3-204ENST00000565453 CAMK2N1Q7Z7J9 78 aa5.96□□□□□ -1.46
CDH3-204ENST00000565453 COA5Q86WW8 74 aa5.94□□□□□ -1.46
CDH3-204ENST00000565453 KRTAP19-7Q3SYF9 63 aa5.92□□□□□ -1.46
CDH3-204ENST00000565453 BRK1Q8WUW1 75 aa5.91□□□□□ -1.46
CDH3-204ENST00000565453 MT1EP04732 61 aa5.86□□□□□ -1.47
CDH3-204ENST00000565453 LCE5AQ5TCM9 118 aa5.86□□□□□ -1.47
CDH3-204ENST00000565453 A0A0D9SG42 100 aa5.85□□□□□ -1.47
CDH3-204ENST00000565453 KTN1-AS1Q86SY8 53 aa5.83□□□□□ -1.48
CDH3-204ENST00000565453 SPATA8Q6RVD6 105 aa5.82□□□□□ -1.48
CDH3-204ENST00000565453 KRTAP19-3Q7Z4W3 81 aa5.82□□□□□ -1.48
CDH3-204ENST00000565453 CYSTM1Q9H1C7 97 aa5.8□□□□□ -1.48
CDH3-204ENST00000565453 H3BS24 57 aa5.79□□□□□ -1.48
CDH3-204ENST00000565453 A0A1B0GU33 70 aa5.78□□□□□ -1.48
CDH3-204ENST00000565453 H7BZZ5 65 aa5.77□□□□□ -1.49
CDH3-204ENST00000565453 KRTAP12-1P59990 96 aa5.76□□□□□ -1.49
CDH3-204ENST00000565453 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
CDH3-204ENST00000565453 DSTQ03001 7570 aaKnown RBP5.72□□□□□ -1.49
CDH3-204ENST00000565453 KRTAP19-5Q3LI72 72 aa5.71□□□□□ -1.5
CDH3-204ENST00000565453 Q1T7F1 81 aa5.69□□□□□ -1.5
CDH3-204ENST00000565453 MT1GP13640 62 aa5.66□□□□□ -1.5
CDH3-204ENST00000565453 KRTAP4-9Q9BYQ8 210 aa5.65□□□□□ -1.5
CDH3-204ENST00000565453 A0A1B0GU69 56 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms