RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KRTAP10-4P60372 401 aaPredicted RBP6.97□□□□□ -1.29
CLN3-210ENST00000563874 DMBT1Q9UGM3 2413 aaPredicted RBP6.97□□□□□ -1.29
CLN3-210ENST00000563874 APOBP04114 4563 aaKnown RBP6.97□□□□□ -1.29
CLN3-210ENST00000563874 EPPK1P58107 5090 aaKnown RBP6.97□□□□□ -1.29
CLN3-210ENST00000563874 COX6B2Q6YFQ2 88 aa6.94□□□□□ -1.3
CLN3-210ENST00000563874 CRIPTQ9P021 101 aa6.93□□□□□ -1.3
CLN3-210ENST00000563874 SPINT4Q6UDR6 99 aa6.91□□□□□ -1.3
CLN3-210ENST00000563874 LRP1Q07954 4544 aaKnown RBP6.89□□□□□ -1.31
CLN3-210ENST00000563874 SEC61BP60468 96 aaKnown RBP6.89□□□□□ -1.31
CLN3-210ENST00000563874 A0A1B0GVY2 172 aa6.88□□□□□ -1.31
CLN3-210ENST00000563874 J3QL48 77 aa6.86□□□□□ -1.31
CLN3-210ENST00000563874 MYCBP2O75592 4640 aa6.85□□□□□ -1.31
CLN3-210ENST00000563874 K7ERS5 55 aa6.84□□□□□ -1.31
CLN3-210ENST00000563874 KRTAP17-1Q9BYP8 105 aa6.83□□□□□ -1.32
CLN3-210ENST00000563874 HSPG2P98160 4391 aa6.83□□□□□ -1.32
CLN3-210ENST00000563874 FAT3Q8TDW7 4589 aa6.82□□□□□ -1.32
CLN3-210ENST00000563874 A0A0D9SG42 100 aa6.82□□□□□ -1.32
CLN3-210ENST00000563874 KRTAP3-3Q9BYR6 98 aa6.8□□□□□ -1.32
CLN3-210ENST00000563874 KRTAP10-6P60371 365 aaPredicted RBP6.8□□□□□ -1.32
CLN3-210ENST00000563874 KRTAP13-4Q3LI77 160 aa6.79□□□□□ -1.32
CLN3-210ENST00000563874 KRTAP10-8P60410 259 aa6.78□□□□□ -1.32
CLN3-210ENST00000563874 TNXBP22105 4242 aa6.76□□□□□ -1.33
CLN3-210ENST00000563874 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
CLN3-210ENST00000563874 KRTAP3-2Q9BYR7 98 aa6.73□□□□□ -1.33
CLN3-210ENST00000563874 HERC2O95714 4834 aa6.73□□□□□ -1.33
CLN3-210ENST00000563874 S4R3F8 94 aa6.71□□□□□ -1.33
CLN3-210ENST00000563874 XP32Q5T750 250 aa6.71□□□□□ -1.34
CLN3-210ENST00000563874 KRTAP15-1Q3LI76 137 aa6.67□□□□□ -1.34
CLN3-210ENST00000563874 Q5VSD8 79 aa6.66□□□□□ -1.34
CLN3-210ENST00000563874 LPAP08519 4548 aa6.63□□□□□ -1.35
CLN3-210ENST00000563874 TPRXLQ17RH7 258 aa6.62□□□□□ -1.35
CLN3-210ENST00000563874 C10orf95Q9H7T3 257 aa6.62□□□□□ -1.35
CLN3-210ENST00000563874 PCLOQ9Y6V0 5065 aa6.61□□□□□ -1.35
CLN3-210ENST00000563874 KRTAP12-2P59991 146 aa6.58□□□□□ -1.36
CLN3-210ENST00000563874 KIAA1109Q2LD37 5005 aa6.58□□□□□ -1.36
CLN3-210ENST00000563874 LRP2P98164 4655 aa6.54□□□□□ -1.36
CLN3-210ENST00000563874 RYR1P21817 5038 aa6.53□□□□□ -1.36
CLN3-210ENST00000563874 KRTAP12-1P59990 96 aa6.48□□□□□ -1.37
CLN3-210ENST00000563874 MT1HL1P0DM35 61 aa6.48□□□□□ -1.37
CLN3-210ENST00000563874 KRTAP4-5Q9BYR2 181 aa6.44□□□□□ -1.38
CLN3-210ENST00000563874 ABCA13Q86UQ4 5058 aa6.44□□□□□ -1.38
CLN3-210ENST00000563874 M0QZ58 72 aa6.36□□□□□ -1.39
CLN3-210ENST00000563874 R4GN34 69 aa6.27□□□□□ -1.41
CLN3-210ENST00000563874 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
CLN3-210ENST00000563874 HERC1Q15751 4861 aa6.21□□□□□ -1.42
CLN3-210ENST00000563874 CAMK2N1Q7Z7J9 78 aa6.2□□□□□ -1.42
CLN3-210ENST00000563874 KRTAP4-1Q9BYQ7 146 aa6.13□□□□□ -1.43
CLN3-210ENST00000563874 MUC17Q685J3 4493 aa6.13□□□□□ -1.43
CLN3-210ENST00000563874 MUC2Q02817 5179 aa6.08□□□□□ -1.44
CLN3-210ENST00000563874 PLAC4Q8WY50 150 aa6□□□□□ -1.45
CLN3-210ENST00000563874 KRTAP19-2Q3LHN2 52 aa5.97□□□□□ -1.45
CLN3-210ENST00000563874 HMCN2Q8NDA2 5059 aa5.93□□□□□ -1.46
CLN3-210ENST00000563874 UBR4Q5T4S7 5183 aa5.87□□□□□ -1.47
CLN3-210ENST00000563874 PRO2289Q9P1D8 64 aa5.85□□□□□ -1.47
CLN3-210ENST00000563874 FLGP20930 4061 aaPredicted RBP5.83□□□□□ -1.48
CLN3-210ENST00000563874 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
CLN3-210ENST00000563874 FAT4Q6V0I7 4981 aa5.76□□□□□ -1.49
CLN3-210ENST00000563874 TNP1P09430 55 aa5.72□□□□□ -1.49
CLN3-210ENST00000563874 RNF213Q63HN8 5207 aa5.68□□□□□ -1.5
CLN3-210ENST00000563874 LCE2CQ5TA81 110 aa5.57□□□□□ -1.52
CLN3-210ENST00000563874 M0R2T5 61 aa5.54□□□□□ -1.52
CLN3-210ENST00000563874 KRTAP19-1Q8IUB9 90 aa5.54□□□□□ -1.52
CLN3-210ENST00000563874 KRTAP23-1A1A580 65 aa5.54□□□□□ -1.52
CLN3-210ENST00000563874 SPRR2GQ9BYE4 73 aa5.51□□□□□ -1.53
CLN3-210ENST00000563874 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
CLN3-210ENST00000563874 LCE3AQ5TA76 89 aa5.46□□□□□ -1.54
CLN3-210ENST00000563874 KRTAP9-2Q9BYQ4 174 aa5.46□□□□□ -1.54
CLN3-210ENST00000563874 INE1O15225 51 aa5.44□□□□□ -1.54
CLN3-210ENST00000563874 KRTAP10-10P60014 251 aa5.42□□□□□ -1.54
CLN3-210ENST00000563874 MT1HP80294 61 aa5.42□□□□□ -1.54
CLN3-210ENST00000563874 MT1FP04733 61 aa5.4□□□□□ -1.54
CLN3-210ENST00000563874 LCE2DQ5TA82 110 aaPredicted RBP5.38□□□□□ -1.55
CLN3-210ENST00000563874 MT2AP02795 61 aa5.37□□□□□ -1.55
CLN3-210ENST00000563874 KRTAP9-6A0A140TA67 174 aa5.37□□□□□ -1.55
CLN3-210ENST00000563874 LCE2AQ5TA79 106 aaPredicted RBP5.36□□□□□ -1.55
CLN3-210ENST00000563874 KRTAP9-8Q9BYQ0 159 aa5.31□□□□□ -1.56
CLN3-210ENST00000563874 KRTAP10-5P60370 271 aa5.24□□□□□ -1.57
CLN3-210ENST00000563874 KRTAP8-1Q8IUC2 63 aa5.24□□□□□ -1.57
CLN3-210ENST00000563874 MT1BP07438 61 aa5.22□□□□□ -1.57
CLN3-210ENST00000563874 MT1XP80297 61 aa5.22□□□□□ -1.57
CLN3-210ENST00000563874 KRTAP19-8Q3LI54 63 aa5.22□□□□□ -1.57
CLN3-210ENST00000563874 KRTAP10-12P60413 245 aa5.17□□□□□ -1.58
CLN3-210ENST00000563874 KRTAP12-3P60328 96 aa5.16□□□□□ -1.58
CLN3-210ENST00000563874 KRTAP10-7P60409 375 aaPredicted RBP5.14□□□□□ -1.59
CLN3-210ENST00000563874 CRCT1Q9UGL9 99 aa5.13□□□□□ -1.59
CLN3-210ENST00000563874 KRTAP9-3Q9BYQ3 159 aa5.06□□□□□ -1.6
CLN3-210ENST00000563874 USH2AO75445 5202 aa5.03□□□□□ -1.6
CLN3-210ENST00000563874 KMT2DO14686 5537 aa5.01□□□□□ -1.61
CLN3-210ENST00000563874 FSIP2Q5CZC0 6907 aa4.98□□□□□ -1.61
CLN3-210ENST00000563874 KRTAP19-5Q3LI72 72 aa4.93□□□□□ -1.62
CLN3-210ENST00000563874 LCE2BO14633 110 aa4.89□□□□□ -1.63
CLN3-210ENST00000563874 LCE3CQ5T5A8 94 aa4.85□□□□□ -1.63
CLN3-210ENST00000563874 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
CLN3-210ENST00000563874 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
CLN3-210ENST00000563874 KRTAP9-7A8MTY7 169 aa4.79□□□□□ -1.64
CLN3-210ENST00000563874 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.78□□□□□ -1.64
CLN3-210ENST00000563874 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
CLN3-210ENST00000563874 KRTAP4-7Q9BYR0 210 aa4.71□□□□□ -1.65
CLN3-210ENST00000563874 KRTAP19-7Q3SYF9 63 aa4.65□□□□□ -1.66
CLN3-210ENST00000563874 SSPOA2VEC9 5147 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms