RNA–Protein interactions for RNA: ENST00000563219.1

SHCBP1-202, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 3

Gene SHCBP1, Length 485 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-202ENST00000563219 DNAH10Q8IVF4 4471 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 NBASA2RRP1 2371 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 DNAH3Q8TD57 4116 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 HTTP42858 3142 aa0.47□□□□□ -2.33
SHCBP1-202ENST00000563219 PIEZO1Q92508 2521 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 ATMQ13315 3056 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 ANK3Q12955 4377 aaKnown RBP0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 NSD1Q96L73 2696 aaPredicted RBP0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 HECTD4Q9Y4D8 3996 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 TNXBP22105 4242 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 HUWE1Q7Z6Z7 4374 aaKnown RBP0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 FLGP20930 4061 aaPredicted RBP0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 HSPG2P98160 4391 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 UNC79Q9P2D8 2635 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 CSMD1Q96PZ7 3565 aa0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 MKI67P46013 3256 aaKnown RBP0.46□□□□□ -2.34
SHCBP1-202ENST00000563219 UTP20O75691 2785 aaKnown RBP0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 HIVEP1P15822 2718 aa0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 CUBNO60494 3623 aa0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 SMR3BP02814 79 aaPredicted RBP0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 LAMA5O15230 3695 aa0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 DMDP11532 3685 aa0.45□□□□□ -2.34
SHCBP1-202ENST00000563219 PKD1P98161 4303 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 HIVEP3Q5T1R4 2406 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 NBEAL2Q6ZNJ1 2754 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 SPTBN5Q9NRC6 3674 aaKnown RBP0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 MT1AP04731 61 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 SPRR2DP22532 72 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 SPRR2BP35325 72 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 KRTAP21-1Q3LI58 79 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 MTORP42345 2549 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 FAT3Q8TDW7 4589 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 DCHS1Q96JQ0 3298 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 CHD8Q9HCK8 2581 aa0.44□□□□□ -2.34
SHCBP1-202ENST00000563219 APOBP04114 4563 aaKnown RBP0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 DNAH6Q9C0G6 4158 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 DNAH7Q8WXX0 4024 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 STAB1Q9NY15 2570 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 WDFY4Q6ZS81 3184 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 LAMA3Q16787 3333 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 SYNE2Q8WXH0 6885 aaKnown RBP0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 LPAP08519 4548 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 FLNBO75369 2602 aaKnown RBP0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 SRCAPQ6ZRS2 3230 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 ACANP16112 2415 aa0.43□□□□□ -2.34
SHCBP1-202ENST00000563219 MAP1BP46821 2468 aaKnown RBP0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 CSMD2Q7Z408 3487 aa0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 DNAH1Q9P2D7 4330 aa0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 ADGRG4Q8IZF6 3080 aa0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 TEP1Q99973 2627 aaKnown RBP0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 SVEP1Q4LDE5 3571 aa0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 LRP1Q07954 4544 aaKnown RBP0.42□□□□□ -2.34
SHCBP1-202ENST00000563219 LAMA1P25391 3075 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 TEX15Q9BXT5 2789 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 SZT2Q5T011 3432 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 MUC3AQ02505 3323 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 DEFB4AO15263 64 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 SPRR2AP35326 72 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 LRRK2Q5S007 2527 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 MACF1Q9UPN3 7388 aaKnown RBP0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 DNAH17Q9UFH2 4485 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 ACACBO00763 2458 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 MUC5ACP98088 5654 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 USP9XQ93008 2570 aaPredicted RBP0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 EPG5Q9HCE0 2579 aa0.41□□□□□ -2.34
SHCBP1-202ENST00000563219 TGP01266 2768 aa0.4□□□□□ -2.34
SHCBP1-202ENST00000563219 NCOR2Q9Y618 2525 aa0.4□□□□□ -2.34
SHCBP1-202ENST00000563219 MAST4O15021 2626 aa0.4□□□□□ -2.34
SHCBP1-202ENST00000563219 CFAP46Q8IYW2 2715 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 DNAH9Q9NYC9 4486 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 XIRP2A4UGR9 3374 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 ITPR2Q14571 2701 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 FREM2Q5SZK8 3169 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 PTPN13Q12923 2485 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 FSIP2Q5CZC0 6907 aa0.4□□□□□ -2.35
SHCBP1-202ENST00000563219 ZFYVE26Q68DK2 2539 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 SPEGQ15772 3267 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 PLECQ15149 4684 aaKnown RBP0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 KRTAP6-2Q3LI66 62 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 KRTAP19-5Q3LI72 72 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 SONP18583 2426 aaKnown RBP0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 CMYA5Q8N3K9 4069 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 FAT1Q14517 4588 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 RIF1Q5UIP0 2472 aaKnown RBP0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 VPS13CQ709C8 3753 aa0.39□□□□□ -2.35
SHCBP1-202ENST00000563219 FAT4Q6V0I7 4981 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 FAM186AA6NE01 2351 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 DNAH5Q8TE73 4624 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 SPRR2FQ96RM1 72 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 LOC400499M0QZD8 3231 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 LAMA2P24043 3122 aaKnown RBP0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 CFAP47Q6ZTR5 3102 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 ANKHD1Q8IWZ3 2542 aaKnown RBP0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 PKHD1P08F94 4074 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 TRRAPQ9Y4A5 3859 aa0.38□□□□□ -2.35
SHCBP1-202ENST00000563219 DYNC1H1Q14204 4646 aaKnown RBP0.37□□□□□ -2.35
SHCBP1-202ENST00000563219 SPRR2EP22531 72 aa0.37□□□□□ -2.35
SHCBP1-202ENST00000563219 UTRNP46939 3433 aa0.36□□□□□ -2.35
SHCBP1-202ENST00000563219 CEP250Q9BV73 2442 aa0.36□□□□□ -2.35
SHCBP1-202ENST00000563219 USP34Q70CQ2 3546 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms