RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 KRTAP10-4P60372 401 aaPredicted RBP7.55□□□□□ -1.2
GTF3C1-203ENST00000562609 COX6B2Q6YFQ2 88 aa7.55□□□□□ -1.2
GTF3C1-203ENST00000562609 KRTAP15-1Q3LI76 137 aa7.51□□□□□ -1.21
GTF3C1-203ENST00000562609 KRTAP3-1Q9BYR8 98 aa7.51□□□□□ -1.21
GTF3C1-203ENST00000562609 PKHD1L1Q86WI1 4243 aa7.49□□□□□ -1.21
GTF3C1-203ENST00000562609 A0A0A0MQY5 61 aa7.49□□□□□ -1.21
GTF3C1-203ENST00000562609 C10orf95Q9H7T3 257 aa7.48□□□□□ -1.21
GTF3C1-203ENST00000562609 HSPG2P98160 4391 aa7.47□□□□□ -1.21
GTF3C1-203ENST00000562609 KIAA1109Q2LD37 5005 aa7.45□□□□□ -1.22
GTF3C1-203ENST00000562609 DMBT1Q9UGM3 2413 aaPredicted RBP7.45□□□□□ -1.22
GTF3C1-203ENST00000562609 C9orf92A6NGG3 77 aa7.45□□□□□ -1.22
GTF3C1-203ENST00000562609 RPL37P61927 97 aaKnown RBP7.45□□□□□ -1.22
GTF3C1-203ENST00000562609 A0A0D9SG42 100 aa7.4□□□□□ -1.22
GTF3C1-203ENST00000562609 MYCBP2O75592 4640 aa7.39□□□□□ -1.23
GTF3C1-203ENST00000562609 KRTAP17-1Q9BYP8 105 aa7.38□□□□□ -1.23
GTF3C1-203ENST00000562609 RYR1P21817 5038 aa7.38□□□□□ -1.23
GTF3C1-203ENST00000562609 EPPK1P58107 5090 aaKnown RBP7.38□□□□□ -1.23
GTF3C1-203ENST00000562609 Q5VSD8 79 aa7.37□□□□□ -1.23
GTF3C1-203ENST00000562609 RPS29P62273 56 aaKnown RBP7.36□□□□□ -1.23
GTF3C1-203ENST00000562609 TNXBP22105 4242 aa7.35□□□□□ -1.23
GTF3C1-203ENST00000562609 KRTAP13-4Q3LI77 160 aa7.33□□□□□ -1.24
GTF3C1-203ENST00000562609 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
GTF3C1-203ENST00000562609 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
GTF3C1-203ENST00000562609 KRTAP10-8P60410 259 aa7.23□□□□□ -1.25
GTF3C1-203ENST00000562609 S4R3F8 94 aa7.2□□□□□ -1.26
GTF3C1-203ENST00000562609 KRTAP3-2Q9BYR7 98 aa7.17□□□□□ -1.26
GTF3C1-203ENST00000562609 LUZP6Q538Z0 58 aa7.16□□□□□ -1.26
GTF3C1-203ENST00000562609 KRTAP12-2P59991 146 aa7.15□□□□□ -1.26
GTF3C1-203ENST00000562609 KRTAP3-3Q9BYR6 98 aa7.13□□□□□ -1.27
GTF3C1-203ENST00000562609 ABCA13Q86UQ4 5058 aa7.12□□□□□ -1.27
GTF3C1-203ENST00000562609 MT1HL1P0DM35 61 aa7.1□□□□□ -1.27
GTF3C1-203ENST00000562609 KRTAP4-5Q9BYR2 181 aa7.09□□□□□ -1.28
GTF3C1-203ENST00000562609 LPAP08519 4548 aa7.08□□□□□ -1.28
GTF3C1-203ENST00000562609 XP32Q5T750 250 aa7.07□□□□□ -1.28
GTF3C1-203ENST00000562609 LRP2P98164 4655 aa7.06□□□□□ -1.28
GTF3C1-203ENST00000562609 KRTAP12-1P59990 96 aa7.03□□□□□ -1.28
GTF3C1-203ENST00000562609 HERC2O95714 4834 aa6.91□□□□□ -1.3
GTF3C1-203ENST00000562609 PLAC4Q8WY50 150 aa6.91□□□□□ -1.3
GTF3C1-203ENST00000562609 M0QZ58 72 aa6.77□□□□□ -1.32
GTF3C1-203ENST00000562609 J3QL48 77 aa6.77□□□□□ -1.33
GTF3C1-203ENST00000562609 BIRC6Q9NR09 4857 aa6.74□□□□□ -1.33
GTF3C1-203ENST00000562609 MUC2Q02817 5179 aa6.73□□□□□ -1.33
GTF3C1-203ENST00000562609 PCLOQ9Y6V0 5065 aa6.69□□□□□ -1.34
GTF3C1-203ENST00000562609 HERC1Q15751 4861 aa6.69□□□□□ -1.34
GTF3C1-203ENST00000562609 MUC17Q685J3 4493 aa6.62□□□□□ -1.35
GTF3C1-203ENST00000562609 KRTAP4-1Q9BYQ7 146 aa6.61□□□□□ -1.35
GTF3C1-203ENST00000562609 SEC61BP60468 96 aaKnown RBP6.56□□□□□ -1.36
GTF3C1-203ENST00000562609 R4GN34 69 aa6.54□□□□□ -1.36
GTF3C1-203ENST00000562609 PP632Q6XCG6 107 aa6.47□□□□□ -1.37
GTF3C1-203ENST00000562609 HMCN2Q8NDA2 5059 aa6.46□□□□□ -1.37
GTF3C1-203ENST00000562609 FAT4Q6V0I7 4981 aa6.41□□□□□ -1.38
GTF3C1-203ENST00000562609 RNF213Q63HN8 5207 aa6.39□□□□□ -1.39
GTF3C1-203ENST00000562609 KRTAP19-2Q3LHN2 52 aa6.37□□□□□ -1.39
GTF3C1-203ENST00000562609 LORP23490 312 aaPredicted RBP6.36□□□□□ -1.39
GTF3C1-203ENST00000562609 UBR4Q5T4S7 5183 aa6.35□□□□□ -1.39
GTF3C1-203ENST00000562609 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
GTF3C1-203ENST00000562609 FLGP20930 4061 aaPredicted RBP6.27□□□□□ -1.41
GTF3C1-203ENST00000562609 SPRR5A0A1B0GTR4 108 aa6.26□□□□□ -1.41
GTF3C1-203ENST00000562609 PRO2289Q9P1D8 64 aa6.24□□□□□ -1.41
GTF3C1-203ENST00000562609 LCE2CQ5TA81 110 aa6.12□□□□□ -1.43
GTF3C1-203ENST00000562609 TNP1P09430 55 aa6.1□□□□□ -1.43
GTF3C1-203ENST00000562609 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
GTF3C1-203ENST00000562609 M0R2T5 61 aa6.04□□□□□ -1.44
GTF3C1-203ENST00000562609 INE1O15225 51 aa6□□□□□ -1.45
GTF3C1-203ENST00000562609 MT1HP80294 61 aa5.97□□□□□ -1.45
GTF3C1-203ENST00000562609 KRTAP10-10P60014 251 aa5.83□□□□□ -1.48
GTF3C1-203ENST00000562609 MT1FP04733 61 aa5.83□□□□□ -1.48
GTF3C1-203ENST00000562609 KRTAP19-1Q8IUB9 90 aa5.82□□□□□ -1.48
GTF3C1-203ENST00000562609 MT2AP02795 61 aa5.81□□□□□ -1.48
GTF3C1-203ENST00000562609 KRTAP9-8Q9BYQ0 159 aa5.79□□□□□ -1.48
GTF3C1-203ENST00000562609 SPRR2GQ9BYE4 73 aa5.77□□□□□ -1.49
GTF3C1-203ENST00000562609 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
GTF3C1-203ENST00000562609 USH2AO75445 5202 aa5.62□□□□□ -1.51
GTF3C1-203ENST00000562609 MT1BP07438 61 aa5.55□□□□□ -1.52
GTF3C1-203ENST00000562609 KRTAP9-3Q9BYQ3 159 aa5.55□□□□□ -1.52
GTF3C1-203ENST00000562609 KRTAP19-8Q3LI54 63 aa5.53□□□□□ -1.52
GTF3C1-203ENST00000562609 KRTAP8-1Q8IUC2 63 aa5.52□□□□□ -1.53
GTF3C1-203ENST00000562609 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
GTF3C1-203ENST00000562609 MT1XP80297 61 aa5.45□□□□□ -1.54
GTF3C1-203ENST00000562609 LCE2AQ5TA79 106 aaPredicted RBP5.44□□□□□ -1.54
GTF3C1-203ENST00000562609 KRTAP10-12P60413 245 aa5.43□□□□□ -1.54
GTF3C1-203ENST00000562609 LCE2BO14633 110 aa5.42□□□□□ -1.54
GTF3C1-203ENST00000562609 KRTAP12-3P60328 96 aa5.41□□□□□ -1.54
GTF3C1-203ENST00000562609 FSIP2Q5CZC0 6907 aa5.39□□□□□ -1.55
GTF3C1-203ENST00000562609 KMT2DO14686 5537 aa5.37□□□□□ -1.55
GTF3C1-203ENST00000562609 KRTAP10-7P60409 375 aaPredicted RBP5.33□□□□□ -1.56
GTF3C1-203ENST00000562609 SSPOA2VEC9 5147 aa5.16□□□□□ -1.58
GTF3C1-203ENST00000562609 KRTAP4-8A0A0G2JLE6 195 aa5.12□□□□□ -1.59
GTF3C1-203ENST00000562609 KRTAP4-8Q9BYQ9 185 aa5.12□□□□□ -1.59
GTF3C1-203ENST00000562609 LCE3CQ5T5A8 94 aa5.11□□□□□ -1.59
GTF3C1-203ENST00000562609 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
GTF3C1-203ENST00000562609 KRTAP9-6A8MVA2 160 aa5.03□□□□□ -1.6
GTF3C1-203ENST00000562609 KRTAP2-3P0C7H8 128 aa5.01□□□□□ -1.61
GTF3C1-203ENST00000562609 KRTAP2-4Q9BYR9 128 aa5.01□□□□□ -1.61
GTF3C1-203ENST00000562609 KRTAP2-1Q9BYU5 128 aa5.01□□□□□ -1.61
GTF3C1-203ENST00000562609 LCE2DQ5TA82 110 aaPredicted RBP4.93□□□□□ -1.62
GTF3C1-203ENST00000562609 KRTAP19-7Q3SYF9 63 aa4.87□□□□□ -1.63
GTF3C1-203ENST00000562609 KRTAP19-6Q3LI70 58 aa4.85□□□□□ -1.63
GTF3C1-203ENST00000562609 FCGBPQ9Y6R7 5405 aaPredicted RBP4.85□□□□□ -1.63
GTF3C1-203ENST00000562609 KRTAP4-7Q9BYR0 210 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms