RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 RPL37P61927 97 aaKnown RBP7.21□□□□□ -1.25
VPS9D1-202ENST00000561976 KMT2CQ8NEZ4 4911 aaKnown RBP7.21□□□□□ -1.26
VPS9D1-202ENST00000561976 KRTAP10-6P60371 365 aaPredicted RBP7.2□□□□□ -1.26
VPS9D1-202ENST00000561976 A0A0A0MQY5 61 aa7.2□□□□□ -1.26
VPS9D1-202ENST00000561976 RYR2Q92736 4967 aa7.19□□□□□ -1.26
VPS9D1-202ENST00000561976 KRTAP3-3Q9BYR6 98 aa7.19□□□□□ -1.26
VPS9D1-202ENST00000561976 KRTAP13-4Q3LI77 160 aa7.17□□□□□ -1.26
VPS9D1-202ENST00000561976 S4R3F8 94 aa7.15□□□□□ -1.26
VPS9D1-202ENST00000561976 KRTAP3-2Q9BYR7 98 aa7.13□□□□□ -1.27
VPS9D1-202ENST00000561976 KRTAP10-8P60410 259 aa7.11□□□□□ -1.27
VPS9D1-202ENST00000561976 SPINT4Q6UDR6 99 aa7.11□□□□□ -1.27
VPS9D1-202ENST00000561976 XP32Q5T750 250 aa7.08□□□□□ -1.28
VPS9D1-202ENST00000561976 FAT3Q8TDW7 4589 aa7.07□□□□□ -1.28
VPS9D1-202ENST00000561976 NDUFAF8A1L188 74 aa7.07□□□□□ -1.28
VPS9D1-202ENST00000561976 TPRXLQ17RH7 258 aa7.04□□□□□ -1.28
VPS9D1-202ENST00000561976 LRP1Q07954 4544 aaKnown RBP7.04□□□□□ -1.28
VPS9D1-202ENST00000561976 HSPG2P98160 4391 aa7.02□□□□□ -1.29
VPS9D1-202ENST00000561976 C10orf95Q9H7T3 257 aa7.01□□□□□ -1.29
VPS9D1-202ENST00000561976 RYR3Q15413 4870 aa7.01□□□□□ -1.29
VPS9D1-202ENST00000561976 Q5VSD8 79 aa7□□□□□ -1.29
VPS9D1-202ENST00000561976 TNXBP22105 4242 aa6.98□□□□□ -1.29
VPS9D1-202ENST00000561976 KRTAP12-2P59991 146 aa6.97□□□□□ -1.29
VPS9D1-202ENST00000561976 MYCBP2O75592 4640 aa6.94□□□□□ -1.3
VPS9D1-202ENST00000561976 KRTAP12-1P59990 96 aa6.9□□□□□ -1.31
VPS9D1-202ENST00000561976 KRTAP15-1Q3LI76 137 aa6.83□□□□□ -1.32
VPS9D1-202ENST00000561976 RYR1P21817 5038 aa6.83□□□□□ -1.32
VPS9D1-202ENST00000561976 M0QZ58 72 aa6.82□□□□□ -1.32
VPS9D1-202ENST00000561976 KRTAP17-1Q9BYP8 105 aa6.8□□□□□ -1.32
VPS9D1-202ENST00000561976 KIAA1109Q2LD37 5005 aa6.79□□□□□ -1.32
VPS9D1-202ENST00000561976 MT1HL1P0DM35 61 aa6.78□□□□□ -1.32
VPS9D1-202ENST00000561976 EPPK1P58107 5090 aaKnown RBP6.76□□□□□ -1.33
VPS9D1-202ENST00000561976 LPAP08519 4548 aa6.75□□□□□ -1.33
VPS9D1-202ENST00000561976 LUZP6Q538Z0 58 aa6.74□□□□□ -1.33
VPS9D1-202ENST00000561976 LRP2P98164 4655 aa6.7□□□□□ -1.34
VPS9D1-202ENST00000561976 R4GN34 69 aa6.68□□□□□ -1.34
VPS9D1-202ENST00000561976 LORP23490 312 aaPredicted RBP6.52□□□□□ -1.37
VPS9D1-202ENST00000561976 KRTAP4-5Q9BYR2 181 aa6.52□□□□□ -1.37
VPS9D1-202ENST00000561976 SEC61BP60468 96 aaKnown RBP6.49□□□□□ -1.37
VPS9D1-202ENST00000561976 ABCA13Q86UQ4 5058 aa6.46□□□□□ -1.37
VPS9D1-202ENST00000561976 PLAC4Q8WY50 150 aa6.45□□□□□ -1.38
VPS9D1-202ENST00000561976 KRTAP4-1Q9BYQ7 146 aa6.39□□□□□ -1.39
VPS9D1-202ENST00000561976 CAMK2N1Q7Z7J9 78 aa6.38□□□□□ -1.39
VPS9D1-202ENST00000561976 MUC17Q685J3 4493 aa6.35□□□□□ -1.39
VPS9D1-202ENST00000561976 HERC2O95714 4834 aa6.34□□□□□ -1.39
VPS9D1-202ENST00000561976 PP632Q6XCG6 107 aa6.3□□□□□ -1.4
VPS9D1-202ENST00000561976 BIRC6Q9NR09 4857 aa6.29□□□□□ -1.4
VPS9D1-202ENST00000561976 J3QL48 77 aa6.28□□□□□ -1.4
VPS9D1-202ENST00000561976 KRTAP19-2Q3LHN2 52 aa6.24□□□□□ -1.41
VPS9D1-202ENST00000561976 TNP1P09430 55 aa6.13□□□□□ -1.43
VPS9D1-202ENST00000561976 PCLOQ9Y6V0 5065 aa6.12□□□□□ -1.43
VPS9D1-202ENST00000561976 HERC1Q15751 4861 aa6.08□□□□□ -1.44
VPS9D1-202ENST00000561976 MUC2Q02817 5179 aa6.06□□□□□ -1.44
VPS9D1-202ENST00000561976 FLGP20930 4061 aaPredicted RBP6.03□□□□□ -1.44
VPS9D1-202ENST00000561976 KRTAP23-1A1A580 65 aa5.99□□□□□ -1.45
VPS9D1-202ENST00000561976 HMCN2Q8NDA2 5059 aa5.98□□□□□ -1.45
VPS9D1-202ENST00000561976 SPRR5A0A1B0GTR4 108 aa5.89□□□□□ -1.47
VPS9D1-202ENST00000561976 SPRR2GQ9BYE4 73 aa5.84□□□□□ -1.47
VPS9D1-202ENST00000561976 M0R2T5 61 aa5.83□□□□□ -1.48
VPS9D1-202ENST00000561976 KRTAP19-1Q8IUB9 90 aa5.81□□□□□ -1.48
VPS9D1-202ENST00000561976 LCE2CQ5TA81 110 aa5.81□□□□□ -1.48
VPS9D1-202ENST00000561976 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
VPS9D1-202ENST00000561976 LCE3AQ5TA76 89 aa5.77□□□□□ -1.49
VPS9D1-202ENST00000561976 UBR4Q5T4S7 5183 aa5.77□□□□□ -1.49
VPS9D1-202ENST00000561976 FAT4Q6V0I7 4981 aa5.76□□□□□ -1.49
VPS9D1-202ENST00000561976 RNF213Q63HN8 5207 aa5.74□□□□□ -1.49
VPS9D1-202ENST00000561976 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
VPS9D1-202ENST00000561976 MT1HP80294 61 aa5.67□□□□□ -1.5
VPS9D1-202ENST00000561976 MT1FP04733 61 aa5.65□□□□□ -1.51
VPS9D1-202ENST00000561976 MT2AP02795 61 aa5.63□□□□□ -1.51
VPS9D1-202ENST00000561976 KRTAP8-1Q8IUC2 63 aa5.58□□□□□ -1.52
VPS9D1-202ENST00000561976 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
VPS9D1-202ENST00000561976 INE1O15225 51 aa5.55□□□□□ -1.52
VPS9D1-202ENST00000561976 KRTAP19-8Q3LI54 63 aa5.54□□□□□ -1.52
VPS9D1-202ENST00000561976 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
VPS9D1-202ENST00000561976 MT1XP80297 61 aa5.49□□□□□ -1.53
VPS9D1-202ENST00000561976 MT1BP07438 61 aa5.49□□□□□ -1.53
VPS9D1-202ENST00000561976 KRTAP12-3P60328 96 aa5.49□□□□□ -1.53
VPS9D1-202ENST00000561976 KRTAP10-12P60413 245 aa5.48□□□□□ -1.53
VPS9D1-202ENST00000561976 KRTAP10-7P60409 375 aaPredicted RBP5.38□□□□□ -1.55
VPS9D1-202ENST00000561976 KRTAP9-3Q9BYQ3 159 aa5.3□□□□□ -1.56
VPS9D1-202ENST00000561976 KRTAP19-5Q3LI72 72 aa5.2□□□□□ -1.58
VPS9D1-202ENST00000561976 LCE3CQ5T5A8 94 aa5.16□□□□□ -1.58
VPS9D1-202ENST00000561976 LCE2AQ5TA79 106 aaPredicted RBP5.1□□□□□ -1.59
VPS9D1-202ENST00000561976 LCE2BO14633 110 aa5.08□□□□□ -1.6
VPS9D1-202ENST00000561976 KRTAP4-8A0A0G2JLE6 195 aa5.03□□□□□ -1.6
VPS9D1-202ENST00000561976 KRTAP4-8Q9BYQ9 185 aa5.03□□□□□ -1.6
VPS9D1-202ENST00000561976 USH2AO75445 5202 aa5.01□□□□□ -1.61
VPS9D1-202ENST00000561976 KMT2DO14686 5537 aa5.01□□□□□ -1.61
VPS9D1-202ENST00000561976 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
VPS9D1-202ENST00000561976 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.62
VPS9D1-202ENST00000561976 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
VPS9D1-202ENST00000561976 KRTAP2-3P0C7H8 128 aa4.84□□□□□ -1.63
VPS9D1-202ENST00000561976 KRTAP2-4Q9BYR9 128 aa4.84□□□□□ -1.63
VPS9D1-202ENST00000561976 KRTAP2-1Q9BYU5 128 aa4.84□□□□□ -1.63
VPS9D1-202ENST00000561976 MT1LQ93083 61 aa4.77□□□□□ -1.65
VPS9D1-202ENST00000561976 KRTAP19-4Q3LI73 84 aa4.75□□□□□ -1.65
VPS9D1-202ENST00000561976 MT1EP04732 61 aa4.74□□□□□ -1.65
VPS9D1-202ENST00000561976 SSPOA2VEC9 5147 aa4.71□□□□□ -1.66
VPS9D1-202ENST00000561976 FSIP2Q5CZC0 6907 aa4.7□□□□□ -1.66
VPS9D1-202ENST00000561976 LOC100996750A0A140TA64 210 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms