RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
CLN3-208ENST00000561505 SMIM6P0DI80 62 aa6.94□□□□□ -1.3
CLN3-208ENST00000561505 MT1XP80297 61 aa6.93□□□□□ -1.3
CLN3-208ENST00000561505 BATFQ16520 125 aa6.93□□□□□ -1.3
CLN3-208ENST00000561505 LCE1AQ5T7P2 110 aa6.92□□□□□ -1.3
CLN3-208ENST00000561505 KRTAP2-2Q9BYT5 123 aa6.92□□□□□ -1.3
CLN3-208ENST00000561505 KRTAP2-1Q9BYU5 128 aa6.92□□□□□ -1.3
CLN3-208ENST00000561505 PRO2289Q9P1D8 64 aa6.89□□□□□ -1.31
CLN3-208ENST00000561505 KRTAP12-2P59991 146 aa6.88□□□□□ -1.31
CLN3-208ENST00000561505 PRO0461Q9UI25 63 aa6.86□□□□□ -1.31
CLN3-208ENST00000561505 KRTAP8-1Q8IUC2 63 aa6.85□□□□□ -1.31
CLN3-208ENST00000561505 SPCS1Q9Y6A9 102 aa6.85□□□□□ -1.31
CLN3-208ENST00000561505 LOC101927531A0A1B0GV80 90 aa6.82□□□□□ -1.32
CLN3-208ENST00000561505 A8MUN3 132 aa6.8□□□□□ -1.32
CLN3-208ENST00000561505 NDUFC1O43677 76 aa6.8□□□□□ -1.32
CLN3-208ENST00000561505 TRAV22A0A0B4J277 110 aa6.78□□□□□ -1.32
CLN3-208ENST00000561505 ADM2Q7Z4H4 148 aa6.75□□□□□ -1.33
CLN3-208ENST00000561505 SPRR2DP22532 72 aa6.74□□□□□ -1.33
CLN3-208ENST00000561505 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
CLN3-208ENST00000561505 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
CLN3-208ENST00000561505 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
CLN3-208ENST00000561505 K7EP34 96 aa6.71□□□□□ -1.34
CLN3-208ENST00000561505 ACYP1P07311 99 aa6.66□□□□□ -1.34
CLN3-208ENST00000561505 ATOX1O00244 68 aa6.64□□□□□ -1.35
CLN3-208ENST00000561505 UQCRQO14949 82 aa6.64□□□□□ -1.35
CLN3-208ENST00000561505 KRTAP10-12P60413 245 aa6.61□□□□□ -1.35
CLN3-208ENST00000561505 COL5A1-AS1Q5SY13 56 aa6.61□□□□□ -1.35
CLN3-208ENST00000561505 LCE3BQ5TA77 95 aa6.61□□□□□ -1.35
CLN3-208ENST00000561505 R4GN34 69 aa6.61□□□□□ -1.35
CLN3-208ENST00000561505 H0Y9P7 68 aa6.6□□□□□ -1.35
CLN3-208ENST00000561505 P0C880 135 aa6.6□□□□□ -1.35
CLN3-208ENST00000561505 F8W1H4 67 aa6.58□□□□□ -1.36
CLN3-208ENST00000561505 LOC105371267A0A1B0GV96 52 aa6.57□□□□□ -1.36
CLN3-208ENST00000561505 KRTAP10-7P60409 375 aaPredicted RBP6.57□□□□□ -1.36
CLN3-208ENST00000561505 ETDBQ3ZM63 59 aa6.57□□□□□ -1.36
CLN3-208ENST00000561505 C20orf197Q8N268 126 aa6.55□□□□□ -1.36
CLN3-208ENST00000561505 KRTAP3-2Q9BYR7 98 aa6.54□□□□□ -1.36
CLN3-208ENST00000561505 M0QZ58 72 aa6.53□□□□□ -1.36
CLN3-208ENST00000561505 GTF2H5Q6ZYL4 71 aa6.51□□□□□ -1.37
CLN3-208ENST00000561505 ATP5EP2Q5VTU8 51 aa6.5□□□□□ -1.37
CLN3-208ENST00000561505 LINC00208Q96KT6 92 aa6.47□□□□□ -1.37
CLN3-208ENST00000561505 FAM240AA0A1B0GVK7 77 aa6.45□□□□□ -1.38
CLN3-208ENST00000561505 HIST1H4AP62805 103 aaKnown RBP6.44□□□□□ -1.38
CLN3-208ENST00000561505 OCR1Q9BZK8 76 aa6.4□□□□□ -1.38
CLN3-208ENST00000561505 LINC01554Q52M75 96 aa6.39□□□□□ -1.39
CLN3-208ENST00000561505 DMAC1Q96GE9 116 aa6.38□□□□□ -1.39
CLN3-208ENST00000561505 MP68P56378 58 aa6.36□□□□□ -1.39
CLN3-208ENST00000561505 GPR98Q8WXG9 6306 aa6.3□□□□□ -1.4
CLN3-208ENST00000561505 H3BPC8 53 aa6.3□□□□□ -1.4
CLN3-208ENST00000561505 LINC00643Q86TS7 51 aa6.3□□□□□ -1.4
CLN3-208ENST00000561505 LCE5AQ5TCM9 118 aa6.29□□□□□ -1.4
CLN3-208ENST00000561505 TRAV7A0A075B6U4 112 aa6.24□□□□□ -1.41
CLN3-208ENST00000561505 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
CLN3-208ENST00000561505 KRTAP4-9Q9BYQ8 210 aa6.22□□□□□ -1.41
CLN3-208ENST00000561505 MT-ATP8P03928 68 aa6.2□□□□□ -1.42
CLN3-208ENST00000561505 DSTQ03001 7570 aaKnown RBP6.2□□□□□ -1.42
CLN3-208ENST00000561505 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
CLN3-208ENST00000561505 MT1EP04732 61 aa6.16□□□□□ -1.42
CLN3-208ENST00000561505 ACYP2P14621 99 aa6.11□□□□□ -1.43
CLN3-208ENST00000561505 LCE1DQ5T752 114 aa6.08□□□□□ -1.44
CLN3-208ENST00000561505 SPTSSBQ8NFR3 76 aa6.08□□□□□ -1.44
CLN3-208ENST00000561505 PCP4L1A6NKN8 68 aa6.07□□□□□ -1.44
CLN3-208ENST00000561505 KRTAP13-4Q3LI77 160 aa6.03□□□□□ -1.44
CLN3-208ENST00000561505 MT1GP13640 62 aa6.01□□□□□ -1.45
CLN3-208ENST00000561505 LCE4AQ5TA78 99 aa6.01□□□□□ -1.45
CLN3-208ENST00000561505 CYSTM1Q9H1C7 97 aa6.01□□□□□ -1.45
CLN3-208ENST00000561505 HMCN1Q96RW7 5635 aa6□□□□□ -1.45
CLN3-208ENST00000561505 SCGB1A1P11684 91 aa5.98□□□□□ -1.45
CLN3-208ENST00000561505 CAMK2N1Q7Z7J9 78 aa5.98□□□□□ -1.45
CLN3-208ENST00000561505 CHKB-CPT1BH3BT56 60 aa5.9□□□□□ -1.46
CLN3-208ENST00000561505 KRTAP19-5Q3LI72 72 aa5.9□□□□□ -1.46
CLN3-208ENST00000561505 KRTAP5-4Q6L8H1 288 aa5.9□□□□□ -1.46
CLN3-208ENST00000561505 PP632Q6XCG6 107 aa5.9□□□□□ -1.46
CLN3-208ENST00000561505 MT4P47944 62 aa5.89□□□□□ -1.47
CLN3-208ENST00000561505 KRTAP5-10Q6L8G5 202 aa5.89□□□□□ -1.47
CLN3-208ENST00000561505 MT1MQ8N339 61 aa5.88□□□□□ -1.47
CLN3-208ENST00000561505 AHNAK2Q8IVF2 5795 aa5.87□□□□□ -1.47
CLN3-208ENST00000561505 A0A0D9SG42 100 aa5.87□□□□□ -1.47
CLN3-208ENST00000561505 SMIM20Q8N5G0 67 aa5.82□□□□□ -1.48
CLN3-208ENST00000561505 MT1LQ93083 61 aa5.82□□□□□ -1.48
CLN3-208ENST00000561505 J3QR89 54 aa5.8□□□□□ -1.48
CLN3-208ENST00000561505 SPANXA2-OT1Q8N9U9 137 aa5.79□□□□□ -1.48
CLN3-208ENST00000561505 KRTAP4-6Q9BYQ5 205 aa5.77□□□□□ -1.49
CLN3-208ENST00000561505 A0A1B0GV90 55 aa5.74□□□□□ -1.49
CLN3-208ENST00000561505 KRTAP4-3Q9BYR4 195 aa5.72□□□□□ -1.49
CLN3-208ENST00000561505 KRTAP5-7Q6L8G8 165 aa5.71□□□□□ -1.5
CLN3-208ENST00000561505 SNURFQ9Y675 71 aa5.7□□□□□ -1.5
CLN3-208ENST00000561505 KRTAP12-1P59990 96 aa5.69□□□□□ -1.5
CLN3-208ENST00000561505 KRTAP5-3Q6L8H2 238 aa5.64□□□□□ -1.51
CLN3-208ENST00000561505 SPATA8Q6RVD6 105 aa5.64□□□□□ -1.51
CLN3-208ENST00000561505 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
CLN3-208ENST00000561505 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
CLN3-208ENST00000561505 SERP1Q9Y6X1 66 aa5.59□□□□□ -1.51
CLN3-208ENST00000561505 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
CLN3-208ENST00000561505 COA5Q86WW8 74 aa5.58□□□□□ -1.52
CLN3-208ENST00000561505 A0A1B0GU33 70 aa5.57□□□□□ -1.52
CLN3-208ENST00000561505 SEC61GP60059 68 aa5.57□□□□□ -1.52
CLN3-208ENST00000561505 KRTAP20-2Q3LI61 65 aa5.53□□□□□ -1.52
CLN3-208ENST00000561505 SPRR5A0A1B0GTR4 108 aa5.5□□□□□ -1.53
CLN3-208ENST00000561505 KRTAP5-5Q701N2 237 aaPredicted RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms