RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 Q5VV11 94 aa5.22□□□□□ -1.57
USP3-220ENST00000561381 LCA10Q71F78 164 aa5.21□□□□□ -1.58
USP3-220ENST00000561381 SPRR2GQ9BYE4 73 aa5.21□□□□□ -1.58
USP3-220ENST00000561381 MUC12Q9UKN1 5478 aa5.21□□□□□ -1.58
USP3-220ENST00000561381 CSAG1Q6PB30 78 aa5.2□□□□□ -1.58
USP3-220ENST00000561381 C1orf64Q8NEQ6 169 aa5.2□□□□□ -1.58
USP3-220ENST00000561381 SPCS1Q9Y6A9 102 aa5.18□□□□□ -1.58
USP3-220ENST00000561381 KRTAP10-5P60370 271 aa5.17□□□□□ -1.58
USP3-220ENST00000561381 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.17□□□□□ -1.58
USP3-220ENST00000561381 UBL5Q9BZL1 73 aa5.16□□□□□ -1.58
USP3-220ENST00000561381 KLKP1Q107X0 134 aa5.14□□□□□ -1.59
USP3-220ENST00000561381 PRO0461Q9UI25 63 aa5.12□□□□□ -1.59
USP3-220ENST00000561381 KRTAP5-11Q6L8G4 156 aa5.11□□□□□ -1.59
USP3-220ENST00000561381 A0A087WVE0 104 aa5.1□□□□□ -1.59
USP3-220ENST00000561381 KRTAP5-9P26371 169 aa5.09□□□□□ -1.59
USP3-220ENST00000561381 KRTAP10-7P60409 375 aaPredicted RBP5.09□□□□□ -1.59
USP3-220ENST00000561381 KRTAP20-1Q3LI63 56 aa5.09□□□□□ -1.59
USP3-220ENST00000561381 TP53AIP1Q9HCN2 124 aa5.09□□□□□ -1.59
USP3-220ENST00000561381 LOC105371267A0A1B0GV96 52 aa5.08□□□□□ -1.6
USP3-220ENST00000561381 CYP4F30PQ9H0H9 118 aa5.06□□□□□ -1.6
USP3-220ENST00000561381 KMT2DO14686 5537 aa5.05□□□□□ -1.6
USP3-220ENST00000561381 K7EP34 96 aa5.05□□□□□ -1.6
USP3-220ENST00000561381 IMUPQ9GZP8 106 aa5.04□□□□□ -1.6
USP3-220ENST00000561381 COL5A1-AS1Q5SY13 56 aa5.02□□□□□ -1.61
USP3-220ENST00000561381 CRIPTQ9P021 101 aa5.02□□□□□ -1.61
USP3-220ENST00000561381 MDN1Q9NU22 5596 aa5.01□□□□□ -1.61
USP3-220ENST00000561381 TRAV22A0A0B4J277 110 aa4.99□□□□□ -1.61
USP3-220ENST00000561381 LOC101927531A0A1B0GV80 90 aa4.97□□□□□ -1.61
USP3-220ENST00000561381 ETDBQ3ZM63 59 aa4.97□□□□□ -1.61
USP3-220ENST00000561381 NDUFC1O43677 76 aa4.94□□□□□ -1.62
USP3-220ENST00000561381 F8W1H4 67 aa4.93□□□□□ -1.62
USP3-220ENST00000561381 H0YAA0 97 aa4.93□□□□□ -1.62
USP3-220ENST00000561381 GTF2H5Q6ZYL4 71 aa4.93□□□□□ -1.62
USP3-220ENST00000561381 KRTAP2-2Q9BYT5 123 aa4.93□□□□□ -1.62
USP3-220ENST00000561381 ADM2Q7Z4H4 148 aa4.92□□□□□ -1.62
USP3-220ENST00000561381 MT1XP80297 61 aa4.91□□□□□ -1.62
USP3-220ENST00000561381 SPRR2FQ96RM1 72 aa4.91□□□□□ -1.62
USP3-220ENST00000561381 KRTAP2-3P0C7H8 128 aa4.9□□□□□ -1.63
USP3-220ENST00000561381 KRTAP2-4Q9BYR9 128 aa4.9□□□□□ -1.63
USP3-220ENST00000561381 A8MUN3 132 aa4.89□□□□□ -1.63
USP3-220ENST00000561381 H0Y9P7 68 aa4.89□□□□□ -1.63
USP3-220ENST00000561381 UQCRQO14949 82 aa4.89□□□□□ -1.63
USP3-220ENST00000561381 SPRR2EP22531 72 aa4.88□□□□□ -1.63
USP3-220ENST00000561381 SPRR2BP35325 72 aa4.88□□□□□ -1.63
USP3-220ENST00000561381 SPRR2AP35326 72 aa4.88□□□□□ -1.63
USP3-220ENST00000561381 HIST1H4AP62805 103 aaKnown RBP4.86□□□□□ -1.63
USP3-220ENST00000561381 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
USP3-220ENST00000561381 ATOX1O00244 68 aa4.85□□□□□ -1.63
USP3-220ENST00000561381 ACYP1P07311 99 aa4.85□□□□□ -1.63
USP3-220ENST00000561381 KRTAP8-1Q8IUC2 63 aa4.83□□□□□ -1.64
USP3-220ENST00000561381 ATP5EP2Q5VTU8 51 aa4.82□□□□□ -1.64
USP3-220ENST00000561381 PLAC4Q8WY50 150 aa4.82□□□□□ -1.64
USP3-220ENST00000561381 P0C880 135 aa4.8□□□□□ -1.64
USP3-220ENST00000561381 LINC00208Q96KT6 92 aa4.8□□□□□ -1.64
USP3-220ENST00000561381 FAM240AA0A1B0GVK7 77 aa4.79□□□□□ -1.64
USP3-220ENST00000561381 PCP4L1A6NKN8 68 aa4.79□□□□□ -1.64
USP3-220ENST00000561381 KRTAP12-2P59991 146 aa4.78□□□□□ -1.64
USP3-220ENST00000561381 R4GN34 69 aa4.77□□□□□ -1.65
USP3-220ENST00000561381 M0QZ58 72 aa4.75□□□□□ -1.65
USP3-220ENST00000561381 LCE1EQ5T753 118 aa4.73□□□□□ -1.65
USP3-220ENST00000561381 KRTAP2-1Q9BYU5 128 aa4.73□□□□□ -1.65
USP3-220ENST00000561381 OCR1Q9BZK8 76 aa4.73□□□□□ -1.65
USP3-220ENST00000561381 MP68P56378 58 aa4.72□□□□□ -1.65
USP3-220ENST00000561381 SPRR2DP22532 72 aa4.71□□□□□ -1.66
USP3-220ENST00000561381 LINC01554Q52M75 96 aa4.71□□□□□ -1.66
USP3-220ENST00000561381 LINC00643Q86TS7 51 aa4.71□□□□□ -1.66
USP3-220ENST00000561381 C20orf197Q8N268 126 aa4.71□□□□□ -1.66
USP3-220ENST00000561381 DMAC1Q96GE9 116 aa4.67□□□□□ -1.66
USP3-220ENST00000561381 KRTAP10-12P60413 245 aa4.63□□□□□ -1.67
USP3-220ENST00000561381 H3BPC8 53 aa4.61□□□□□ -1.67
USP3-220ENST00000561381 MT3P25713 68 aa4.56□□□□□ -1.68
USP3-220ENST00000561381 TRAV7A0A075B6U4 112 aa4.54□□□□□ -1.68
USP3-220ENST00000561381 MT-ATP8P03928 68 aa4.54□□□□□ -1.68
USP3-220ENST00000561381 SCGB1A1P11684 91 aa4.54□□□□□ -1.68
USP3-220ENST00000561381 A0A1B0GV90 55 aa4.51□□□□□ -1.69
USP3-220ENST00000561381 ACYP2P14621 99 aa4.51□□□□□ -1.69
USP3-220ENST00000561381 KRTAP5-1Q6L8H4 278 aa4.5□□□□□ -1.69
USP3-220ENST00000561381 SPTSSBQ8NFR3 76 aa4.46□□□□□ -1.7
USP3-220ENST00000561381 CHKB-CPT1BH3BT56 60 aa4.43□□□□□ -1.7
USP3-220ENST00000561381 J3QR89 54 aa4.43□□□□□ -1.7
USP3-220ENST00000561381 KRTAP13-4Q3LI77 160 aa4.43□□□□□ -1.7
USP3-220ENST00000561381 DSTQ03001 7570 aaKnown RBP4.41□□□□□ -1.7
USP3-220ENST00000561381 KRTAP19-7Q3SYF9 63 aa4.39□□□□□ -1.71
USP3-220ENST00000561381 GPR98Q8WXG9 6306 aa4.38□□□□□ -1.71
USP3-220ENST00000561381 CAMK2N1Q7Z7J9 78 aa4.37□□□□□ -1.71
USP3-220ENST00000561381 MT1EP04732 61 aa4.35□□□□□ -1.71
USP3-220ENST00000561381 SNURFQ9Y675 71 aa4.35□□□□□ -1.71
USP3-220ENST00000561381 KRTAP19-3Q7Z4W3 81 aa4.34□□□□□ -1.71
USP3-220ENST00000561381 KRTAP4-4Q9BYR3 166 aa4.34□□□□□ -1.71
USP3-220ENST00000561381 SMIM20Q8N5G0 67 aa4.33□□□□□ -1.72
USP3-220ENST00000561381 KRTAP5-4Q6L8H1 288 aa4.32□□□□□ -1.72
USP3-220ENST00000561381 SPANXA2-OT1Q8N9U9 137 aa4.27□□□□□ -1.73
USP3-220ENST00000561381 A0A0D9SG42 100 aa4.26□□□□□ -1.73
USP3-220ENST00000561381 CYSTM1Q9H1C7 97 aa4.24□□□□□ -1.73
USP3-220ENST00000561381 KRTAP19-5Q3LI72 72 aa4.23□□□□□ -1.73
USP3-220ENST00000561381 SPATA8Q6RVD6 105 aa4.21□□□□□ -1.74
USP3-220ENST00000561381 COA5Q86WW8 74 aa4.2□□□□□ -1.74
USP3-220ENST00000561381 MT1GP13640 62 aa4.19□□□□□ -1.74
USP3-220ENST00000561381 SPINT4Q6UDR6 99 aa4.19□□□□□ -1.74
USP3-220ENST00000561381 K7ERU9 68 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms