RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 SCGB1A1P11684 91 aa7.37□□□□□ -1.23
LMX1B-204ENST00000561065 LINC00208Q96KT6 92 aa7.35□□□□□ -1.23
LMX1B-204ENST00000561065 A8MUN3 132 aa7.34□□□□□ -1.23
LMX1B-204ENST00000561065 H3BPC8 53 aa7.32□□□□□ -1.24
LMX1B-204ENST00000561065 NDUFC1O43677 76 aa7.31□□□□□ -1.24
LMX1B-204ENST00000561065 OCR1Q9BZK8 76 aa7.31□□□□□ -1.24
LMX1B-204ENST00000561065 K7ERU9 68 aa7.28□□□□□ -1.24
LMX1B-204ENST00000561065 IMUPQ9GZP8 106 aa7.28□□□□□ -1.24
LMX1B-204ENST00000561065 MT1BP07438 61 aa7.23□□□□□ -1.25
LMX1B-204ENST00000561065 KRTAP3-3Q9BYR6 98 aa7.23□□□□□ -1.25
LMX1B-204ENST00000561065 CRIPTQ9P021 101 aa7.22□□□□□ -1.25
LMX1B-204ENST00000561065 KLKP1Q107X0 134 aa7.21□□□□□ -1.26
LMX1B-204ENST00000561065 SMIM20Q8N5G0 67 aa7.21□□□□□ -1.26
LMX1B-204ENST00000561065 SPRR2GQ9BYE4 73 aa7.18□□□□□ -1.26
LMX1B-204ENST00000561065 KRTAP6-3Q3LI67 103 aa7.17□□□□□ -1.26
LMX1B-204ENST00000561065 KRTAP19-8Q3LI54 63 aa7.16□□□□□ -1.26
LMX1B-204ENST00000561065 H0YAA0 97 aa7.15□□□□□ -1.26
LMX1B-204ENST00000561065 Q5VV11 94 aa7.14□□□□□ -1.27
LMX1B-204ENST00000561065 TRAV7A0A075B6U4 112 aa7.1□□□□□ -1.27
LMX1B-204ENST00000561065 A6NN06 94 aa7.09□□□□□ -1.27
LMX1B-204ENST00000561065 MT-ATP8P03928 68 aa7.09□□□□□ -1.27
LMX1B-204ENST00000561065 C20orf197Q8N268 126 aa7.06□□□□□ -1.28
LMX1B-204ENST00000561065 DMAC1Q96GE9 116 aa7.06□□□□□ -1.28
LMX1B-204ENST00000561065 ADM2Q7Z4H4 148 aa7.04□□□□□ -1.28
LMX1B-204ENST00000561065 ACYP2P14621 99 aa7.03□□□□□ -1.28
LMX1B-204ENST00000561065 KRTAP10-5P60370 271 aa7.03□□□□□ -1.28
LMX1B-204ENST00000561065 NEBP20929 6669 aa7.03□□□□□ -1.28
LMX1B-204ENST00000561065 SPTSSBQ8NFR3 76 aa7.01□□□□□ -1.29
LMX1B-204ENST00000561065 MUC12Q9UKN1 5478 aa7.01□□□□□ -1.29
LMX1B-204ENST00000561065 R4GN34 69 aa6.94□□□□□ -1.3
LMX1B-204ENST00000561065 CHKB-CPT1BH3BT56 60 aa6.92□□□□□ -1.3
LMX1B-204ENST00000561065 SERP2Q8N6R1 65 aa6.9□□□□□ -1.3
LMX1B-204ENST00000561065 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
LMX1B-204ENST00000561065 SNURFQ9Y675 71 aa6.87□□□□□ -1.31
LMX1B-204ENST00000561065 SPANXA2-OT1Q8N9U9 137 aa6.86□□□□□ -1.31
LMX1B-204ENST00000561065 KRTAP5-9P26371 169 aa6.84□□□□□ -1.31
LMX1B-204ENST00000561065 PRO2289Q9P1D8 64 aa6.83□□□□□ -1.32
LMX1B-204ENST00000561065 KMT2DO14686 5537 aa6.82□□□□□ -1.32
LMX1B-204ENST00000561065 M0QZ58 72 aa6.82□□□□□ -1.32
LMX1B-204ENST00000561065 P0C880 135 aa6.81□□□□□ -1.32
LMX1B-204ENST00000561065 MDN1Q9NU22 5596 aa6.81□□□□□ -1.32
LMX1B-204ENST00000561065 KRTAP3-2Q9BYR7 98 aa6.76□□□□□ -1.33
LMX1B-204ENST00000561065 MT1XP80297 61 aa6.75□□□□□ -1.33
LMX1B-204ENST00000561065 LINC01554Q52M75 96 aa6.73□□□□□ -1.33
LMX1B-204ENST00000561065 COX7CP15954 63 aa6.7□□□□□ -1.34
LMX1B-204ENST00000561065 KRTAP20-1Q3LI63 56 aa6.68□□□□□ -1.34
LMX1B-204ENST00000561065 SEC61GP60059 68 aa6.64□□□□□ -1.35
LMX1B-204ENST00000561065 COA5Q86WW8 74 aa6.6□□□□□ -1.35
LMX1B-204ENST00000561065 SPRR2FQ96RM1 72 aa6.59□□□□□ -1.35
LMX1B-204ENST00000561065 SERP1Q9Y6X1 66 aa6.59□□□□□ -1.35
LMX1B-204ENST00000561065 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
LMX1B-204ENST00000561065 ANAPC13Q9BS18 74 aa6.54□□□□□ -1.36
LMX1B-204ENST00000561065 KRTAP8-1Q8IUC2 63 aa6.52□□□□□ -1.37
LMX1B-204ENST00000561065 H7BZZ5 65 aa6.51□□□□□ -1.37
LMX1B-204ENST00000561065 SPRR2EP22531 72 aa6.51□□□□□ -1.37
LMX1B-204ENST00000561065 SPRR2BP35325 72 aa6.51□□□□□ -1.37
LMX1B-204ENST00000561065 SPRR2AP35326 72 aa6.51□□□□□ -1.37
LMX1B-204ENST00000561065 KRTAP4-8A0A0G2JLE6 195 aa6.49□□□□□ -1.37
LMX1B-204ENST00000561065 KRTAP4-8Q9BYQ9 185 aa6.49□□□□□ -1.37
LMX1B-204ENST00000561065 KRTAP2-3P0C7H8 128 aa6.46□□□□□ -1.38
LMX1B-204ENST00000561065 KRTAP2-4Q9BYR9 128 aa6.46□□□□□ -1.38
LMX1B-204ENST00000561065 LCE1AQ5T7P2 110 aa6.45□□□□□ -1.38
LMX1B-204ENST00000561065 KRTAP10-7P60409 375 aaPredicted RBP6.44□□□□□ -1.38
LMX1B-204ENST00000561065 CAMK2N1Q7Z7J9 78 aa6.42□□□□□ -1.38
LMX1B-204ENST00000561065 A0A1B0GU33 70 aa6.39□□□□□ -1.39
LMX1B-204ENST00000561065 KRTAP10-12P60413 245 aa6.38□□□□□ -1.39
LMX1B-204ENST00000561065 CYSTM1Q9H1C7 97 aa6.38□□□□□ -1.39
LMX1B-204ENST00000561065 ATP5EP56381 51 aaPredicted RBP6.36□□□□□ -1.39
LMX1B-204ENST00000561065 A0A1B0GU69 56 aa6.35□□□□□ -1.39
LMX1B-204ENST00000561065 KRTAP13-4Q3LI77 160 aa6.35□□□□□ -1.39
LMX1B-204ENST00000561065 A0A0D9SG42 100 aa6.3□□□□□ -1.4
LMX1B-204ENST00000561065 CCDC179H3BU77 68 aa6.29□□□□□ -1.4
LMX1B-204ENST00000561065 SPRR2DP22532 72 aa6.29□□□□□ -1.4
LMX1B-204ENST00000561065 SMIM26A0A096LP01 95 aa6.28□□□□□ -1.4
LMX1B-204ENST00000561065 PRR15LQ9BU68 103 aa6.28□□□□□ -1.4
LMX1B-204ENST00000561065 PCP4P48539 62 aa6.27□□□□□ -1.41
LMX1B-204ENST00000561065 SPATA8Q6RVD6 105 aa6.26□□□□□ -1.41
LMX1B-204ENST00000561065 SPINT4Q6UDR6 99 aa6.25□□□□□ -1.41
LMX1B-204ENST00000561065 KRTAP2-2Q9BYT5 123 aa6.25□□□□□ -1.41
LMX1B-204ENST00000561065 KRTAP2-1Q9BYU5 128 aa6.25□□□□□ -1.41
LMX1B-204ENST00000561065 TMEM258P61165 79 aa6.18□□□□□ -1.42
LMX1B-204ENST00000561065 LCE3BQ5TA77 95 aa6.14□□□□□ -1.43
LMX1B-204ENST00000561065 KRTAP12-1P59990 96 aa6.13□□□□□ -1.43
LMX1B-204ENST00000561065 LINC01558Q9Y6Z2 57 aa6.1□□□□□ -1.43
LMX1B-204ENST00000561065 KRTAP19-7Q3SYF9 63 aa6.03□□□□□ -1.44
LMX1B-204ENST00000561065 A8MU10 97 aa6.02□□□□□ -1.45
LMX1B-204ENST00000561065 UQCR11O14957 56 aa6.02□□□□□ -1.45
LMX1B-204ENST00000561065 MT1EP04732 61 aa5.98□□□□□ -1.45
LMX1B-204ENST00000561065 TNP1P09430 55 aa5.96□□□□□ -1.46
LMX1B-204ENST00000561065 LCE5AQ5TCM9 118 aa5.96□□□□□ -1.46
LMX1B-204ENST00000561065 V9GYY9 64 aa5.96□□□□□ -1.46
LMX1B-204ENST00000561065 DSTQ03001 7570 aaKnown RBP5.92□□□□□ -1.46
LMX1B-204ENST00000561065 KRTAP19-3Q7Z4W3 81 aa5.92□□□□□ -1.46
LMX1B-204ENST00000561065 K7ERS5 55 aa5.87□□□□□ -1.47
LMX1B-204ENST00000561065 MIR22HGQ0VDD5 57 aa5.85□□□□□ -1.47
LMX1B-204ENST00000561065 RPS28P62857 69 aaKnown RBP5.84□□□□□ -1.47
LMX1B-204ENST00000561065 KRTAP19-5Q3LI72 72 aa5.83□□□□□ -1.48
LMX1B-204ENST00000561065 C10orf95Q9H7T3 257 aa5.83□□□□□ -1.48
LMX1B-204ENST00000561065 Q1T7F1 81 aa5.79□□□□□ -1.48
LMX1B-204ENST00000561065 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms