RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 KRTAP3-3Q9BYR6 98 aa8.51□□□□□ -1.05
TPM1-228ENST00000560975 DNHD1Q96M86 4753 aa8.5□□□□□ -1.05
TPM1-228ENST00000560975 PKHD1L1Q86WI1 4243 aa8.49□□□□□ -1.05
TPM1-228ENST00000560975 KRTAP3-2Q9BYR7 98 aa8.47□□□□□ -1.05
TPM1-228ENST00000560975 NDUFAF8A1L188 74 aa8.46□□□□□ -1.06
TPM1-228ENST00000560975 DYNC1H1Q14204 4646 aaKnown RBP8.45□□□□□ -1.06
TPM1-228ENST00000560975 APOBP04114 4563 aaKnown RBP8.4□□□□□ -1.06
TPM1-228ENST00000560975 S4R3F8 94 aa8.4□□□□□ -1.07
TPM1-228ENST00000560975 KRTAP12-2P59991 146 aa8.38□□□□□ -1.07
TPM1-228ENST00000560975 KRTAP15-1Q3LI76 137 aa8.38□□□□□ -1.07
TPM1-228ENST00000560975 KRTAP10-8P60410 259 aa8.37□□□□□ -1.07
TPM1-228ENST00000560975 HSPG2P98160 4391 aa8.34□□□□□ -1.07
TPM1-228ENST00000560975 KRTAP10-4P60372 401 aaPredicted RBP8.31□□□□□ -1.08
TPM1-228ENST00000560975 FAT3Q8TDW7 4589 aa8.29□□□□□ -1.08
TPM1-228ENST00000560975 MYCBP2O75592 4640 aa8.28□□□□□ -1.08
TPM1-228ENST00000560975 KRTAP12-1P59990 96 aa8.24□□□□□ -1.09
TPM1-228ENST00000560975 LRP1Q07954 4544 aaKnown RBP8.23□□□□□ -1.09
TPM1-228ENST00000560975 XP32Q5T750 250 aa8.16□□□□□ -1.1
TPM1-228ENST00000560975 TNXBP22105 4242 aa8.12□□□□□ -1.11
TPM1-228ENST00000560975 A0A1B0GVY2 172 aa8.08□□□□□ -1.12
TPM1-228ENST00000560975 LPAP08519 4548 aa8.04□□□□□ -1.12
TPM1-228ENST00000560975 M0QZ58 72 aa8.01□□□□□ -1.13
TPM1-228ENST00000560975 KRTAP21-3Q3LHN1 58 aa7.97□□□□□ -1.13
TPM1-228ENST00000560975 KMT2CQ8NEZ4 4911 aaKnown RBP7.94□□□□□ -1.14
TPM1-228ENST00000560975 LRP2P98164 4655 aa7.88□□□□□ -1.15
TPM1-228ENST00000560975 Q5VSD8 79 aa7.87□□□□□ -1.15
TPM1-228ENST00000560975 PLAC4Q8WY50 150 aa7.86□□□□□ -1.15
TPM1-228ENST00000560975 R4GN34 69 aa7.85□□□□□ -1.15
TPM1-228ENST00000560975 RYR2Q92736 4967 aa7.82□□□□□ -1.16
TPM1-228ENST00000560975 LORP23490 312 aaPredicted RBP7.72□□□□□ -1.17
TPM1-228ENST00000560975 A0A0A0MQY5 61 aa7.71□□□□□ -1.17
TPM1-228ENST00000560975 LUZP6Q538Z0 58 aa7.7□□□□□ -1.18
TPM1-228ENST00000560975 KRTAP17-1Q9BYP8 105 aa7.69□□□□□ -1.18
TPM1-228ENST00000560975 MT1HL1P0DM35 61 aa7.68□□□□□ -1.18
TPM1-228ENST00000560975 RYR1P21817 5038 aa7.62□□□□□ -1.19
TPM1-228ENST00000560975 KIAA1109Q2LD37 5005 aa7.55□□□□□ -1.2
TPM1-228ENST00000560975 CAMK2N1Q7Z7J9 78 aa7.53□□□□□ -1.2
TPM1-228ENST00000560975 RYR3Q15413 4870 aa7.51□□□□□ -1.21
TPM1-228ENST00000560975 ABCA13Q86UQ4 5058 aa7.48□□□□□ -1.21
TPM1-228ENST00000560975 PP632Q6XCG6 107 aa7.46□□□□□ -1.21
TPM1-228ENST00000560975 MUC17Q685J3 4493 aa7.42□□□□□ -1.22
TPM1-228ENST00000560975 KRTAP4-1Q9BYQ7 146 aa7.35□□□□□ -1.23
TPM1-228ENST00000560975 SEC61BP60468 96 aaKnown RBP7.32□□□□□ -1.24
TPM1-228ENST00000560975 TNP1P09430 55 aa7.22□□□□□ -1.25
TPM1-228ENST00000560975 KRTAP4-5Q9BYR2 181 aa7.18□□□□□ -1.26
TPM1-228ENST00000560975 KRTAP19-2Q3LHN2 52 aa7.16□□□□□ -1.26
TPM1-228ENST00000560975 EPPK1P58107 5090 aaKnown RBP7.15□□□□□ -1.26
TPM1-228ENST00000560975 MUC2Q02817 5179 aa7.14□□□□□ -1.27
TPM1-228ENST00000560975 SPRR5A0A1B0GTR4 108 aa7.12□□□□□ -1.27
TPM1-228ENST00000560975 FLGP20930 4061 aaPredicted RBP7.03□□□□□ -1.28
TPM1-228ENST00000560975 KRTAP23-1A1A580 65 aa7.02□□□□□ -1.29
TPM1-228ENST00000560975 J3QL48 77 aa6.96□□□□□ -1.29
TPM1-228ENST00000560975 PCLOQ9Y6V0 5065 aa6.93□□□□□ -1.3
TPM1-228ENST00000560975 HERC1Q15751 4861 aa6.91□□□□□ -1.3
TPM1-228ENST00000560975 LCE3AQ5TA76 89 aa6.85□□□□□ -1.31
TPM1-228ENST00000560975 HERC2O95714 4834 aa6.81□□□□□ -1.32
TPM1-228ENST00000560975 FAT4Q6V0I7 4981 aa6.77□□□□□ -1.33
TPM1-228ENST00000560975 PRO2289Q9P1D8 64 aa6.76□□□□□ -1.33
TPM1-228ENST00000560975 BIRC6Q9NR09 4857 aa6.73□□□□□ -1.33
TPM1-228ENST00000560975 KRTAP19-1Q8IUB9 90 aa6.72□□□□□ -1.33
TPM1-228ENST00000560975 SPRR2GQ9BYE4 73 aa6.71□□□□□ -1.34
TPM1-228ENST00000560975 M0R2T5 61 aa6.62□□□□□ -1.35
TPM1-228ENST00000560975 INE1O15225 51 aa6.59□□□□□ -1.35
TPM1-228ENST00000560975 LCE2CQ5TA81 110 aa6.59□□□□□ -1.36
TPM1-228ENST00000560975 KRTAP8-1Q8IUC2 63 aa6.55□□□□□ -1.36
TPM1-228ENST00000560975 HMCN2Q8NDA2 5059 aa6.52□□□□□ -1.37
TPM1-228ENST00000560975 KRTAP10-10P60014 251 aa6.51□□□□□ -1.37
TPM1-228ENST00000560975 UBR4Q5T4S7 5183 aa6.47□□□□□ -1.37
TPM1-228ENST00000560975 MT1FP04733 61 aa6.47□□□□□ -1.37
TPM1-228ENST00000560975 KRTAP12-3P60328 96 aa6.46□□□□□ -1.38
TPM1-228ENST00000560975 MT2AP02795 61 aa6.42□□□□□ -1.38
TPM1-228ENST00000560975 MT1HP80294 61 aa6.39□□□□□ -1.39
TPM1-228ENST00000560975 KRTAP10-5P60370 271 aa6.39□□□□□ -1.39
TPM1-228ENST00000560975 KRTAP10-12P60413 245 aa6.39□□□□□ -1.39
TPM1-228ENST00000560975 RNF213Q63HN8 5207 aa6.38□□□□□ -1.39
TPM1-228ENST00000560975 MT1XP80297 61 aa6.37□□□□□ -1.39
TPM1-228ENST00000560975 KRTAP19-8Q3LI54 63 aa6.31□□□□□ -1.4
TPM1-228ENST00000560975 MT1BP07438 61 aa6.31□□□□□ -1.4
TPM1-228ENST00000560975 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
TPM1-228ENST00000560975 KRTAP10-7P60409 375 aaPredicted RBP6.3□□□□□ -1.4
TPM1-228ENST00000560975 KRTAP19-5Q3LI72 72 aa6.09□□□□□ -1.43
TPM1-228ENST00000560975 LCE3CQ5T5A8 94 aa6.08□□□□□ -1.44
TPM1-228ENST00000560975 KMT2DO14686 5537 aa6.05□□□□□ -1.44
TPM1-228ENST00000560975 KRTAP9-3Q9BYQ3 159 aa6□□□□□ -1.45
TPM1-228ENST00000560975 KRTAP9-6A8MVA2 160 aa5.97□□□□□ -1.45
TPM1-228ENST00000560975 USH2AO75445 5202 aa5.89□□□□□ -1.47
TPM1-228ENST00000560975 KRTAP4-8A0A0G2JLE6 195 aa5.87□□□□□ -1.47
TPM1-228ENST00000560975 KRTAP4-8Q9BYQ9 185 aa5.87□□□□□ -1.47
TPM1-228ENST00000560975 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
TPM1-228ENST00000560975 KRTAP2-3P0C7H8 128 aa5.79□□□□□ -1.48
TPM1-228ENST00000560975 KRTAP2-4Q9BYR9 128 aa5.79□□□□□ -1.48
TPM1-228ENST00000560975 KRTAP2-1Q9BYU5 128 aa5.79□□□□□ -1.48
TPM1-228ENST00000560975 LCE2BO14633 110 aa5.76□□□□□ -1.49
TPM1-228ENST00000560975 KRTAP19-7Q3SYF9 63 aa5.66□□□□□ -1.5
TPM1-228ENST00000560975 MT1LQ93083 61 aa5.53□□□□□ -1.52
TPM1-228ENST00000560975 MT1EP04732 61 aa5.45□□□□□ -1.54
TPM1-228ENST00000560975 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
TPM1-228ENST00000560975 FSIP2Q5CZC0 6907 aa5.39□□□□□ -1.55
TPM1-228ENST00000560975 KRTAP4-3Q9BYR4 195 aa5.36□□□□□ -1.55
TPM1-228ENST00000560975 KRTAP19-4Q3LI73 84 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms