RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 DNAH2Q9P225 4427 aa3.62□□□□□ -1.83
TSPAN3-209ENST00000560715 TPRXLQ17RH7 258 aa3.61□□□□□ -1.83
TSPAN3-209ENST00000560715 DNAH17Q9UFH2 4485 aa3.6□□□□□ -1.83
TSPAN3-209ENST00000560715 RYR2Q92736 4967 aa3.59□□□□□ -1.83
TSPAN3-209ENST00000560715 PRO2289Q9P1D8 64 aa3.59□□□□□ -1.84
TSPAN3-209ENST00000560715 FRAS1Q86XX4 4008 aa3.57□□□□□ -1.84
TSPAN3-209ENST00000560715 SACSQ9NZJ4 4579 aa3.57□□□□□ -1.84
TSPAN3-209ENST00000560715 DNAH8Q96JB1 4490 aa3.56□□□□□ -1.84
TSPAN3-209ENST00000560715 BIRC6Q9NR09 4857 aa3.56□□□□□ -1.84
TSPAN3-209ENST00000560715 EPPK1P58107 5090 aaKnown RBP3.53□□□□□ -1.84
TSPAN3-209ENST00000560715 DNAH5Q8TE73 4624 aa3.53□□□□□ -1.84
TSPAN3-209ENST00000560715 DNAH11Q96DT5 4516 aa3.52□□□□□ -1.85
TSPAN3-209ENST00000560715 COX6B2Q6YFQ2 88 aa3.51□□□□□ -1.85
TSPAN3-209ENST00000560715 C10orf95Q9H7T3 257 aa3.51□□□□□ -1.85
TSPAN3-209ENST00000560715 RPL37P61927 97 aaKnown RBP3.51□□□□□ -1.85
TSPAN3-209ENST00000560715 PKD1P98161 4303 aa3.5□□□□□ -1.85
TSPAN3-209ENST00000560715 HYDINQ4G0P3 5121 aa3.5□□□□□ -1.85
TSPAN3-209ENST00000560715 FAT2Q9NYQ8 4349 aa3.49□□□□□ -1.85
TSPAN3-209ENST00000560715 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
TSPAN3-209ENST00000560715 KRTAP19-1Q8IUB9 90 aa3.47□□□□□ -1.85
TSPAN3-209ENST00000560715 LOC100996750A0A140TA64 210 aa3.46□□□□□ -1.86
TSPAN3-209ENST00000560715 KRTAP10-1P60331 282 aa3.46□□□□□ -1.86
TSPAN3-209ENST00000560715 KRTAP4-6Q9BYQ5 205 aa3.46□□□□□ -1.86
TSPAN3-209ENST00000560715 KRTAP10-8P60410 259 aa3.45□□□□□ -1.86
TSPAN3-209ENST00000560715 KRTAP9-3Q9BYQ3 159 aa3.44□□□□□ -1.86
TSPAN3-209ENST00000560715 KRTAP17-1Q9BYP8 105 aa3.44□□□□□ -1.86
TSPAN3-209ENST00000560715 LRP1BQ9NZR2 4599 aa3.41□□□□□ -1.86
TSPAN3-209ENST00000560715 HERC2O95714 4834 aa3.41□□□□□ -1.86
TSPAN3-209ENST00000560715 VPS13BQ7Z7G8 4022 aa3.41□□□□□ -1.86
TSPAN3-209ENST00000560715 A0A0D9SG42 100 aa3.4□□□□□ -1.87
TSPAN3-209ENST00000560715 KRTAP13-4Q3LI77 160 aa3.39□□□□□ -1.87
TSPAN3-209ENST00000560715 KRTAP13-2Q52LG2 175 aa3.39□□□□□ -1.87
TSPAN3-209ENST00000560715 KRTAP1-4P0C5Y4 121 aa3.38□□□□□ -1.87
TSPAN3-209ENST00000560715 KRTAP10-6P60371 365 aaPredicted RBP3.38□□□□□ -1.87
TSPAN3-209ENST00000560715 S4R3F8 94 aa3.37□□□□□ -1.87
TSPAN3-209ENST00000560715 PKHD1P08F94 4074 aa3.36□□□□□ -1.87
TSPAN3-209ENST00000560715 A0A1B0GVY2 172 aa3.36□□□□□ -1.87
TSPAN3-209ENST00000560715 PCLOQ9Y6V0 5065 aa3.34□□□□□ -1.87
TSPAN3-209ENST00000560715 DYNC1H1Q14204 4646 aaKnown RBP3.34□□□□□ -1.88
TSPAN3-209ENST00000560715 KRTAP12-2P59991 146 aa3.32□□□□□ -1.88
TSPAN3-209ENST00000560715 LCE1AQ5T7P2 110 aa3.32□□□□□ -1.88
TSPAN3-209ENST00000560715 APOBP04114 4563 aaKnown RBP3.32□□□□□ -1.88
TSPAN3-209ENST00000560715 RPS29P62273 56 aaKnown RBP3.32□□□□□ -1.88
TSPAN3-209ENST00000560715 KIAA1109Q2LD37 5005 aa3.31□□□□□ -1.88
TSPAN3-209ENST00000560715 LCE3CQ5T5A8 94 aa3.31□□□□□ -1.88
TSPAN3-209ENST00000560715 PLAC4Q8WY50 150 aa3.31□□□□□ -1.88
TSPAN3-209ENST00000560715 RYR1P21817 5038 aa3.3□□□□□ -1.88
TSPAN3-209ENST00000560715 SMR3BP02814 79 aaPredicted RBP3.3□□□□□ -1.88
TSPAN3-209ENST00000560715 KRTAP10-4P60372 401 aaPredicted RBP3.3□□□□□ -1.88
TSPAN3-209ENST00000560715 PKHD1L1Q86WI1 4243 aa3.29□□□□□ -1.88
TSPAN3-209ENST00000560715 KRTAP12-1P59990 96 aa3.27□□□□□ -1.89
TSPAN3-209ENST00000560715 DMBT1Q9UGM3 2413 aaPredicted RBP3.27□□□□□ -1.89
TSPAN3-209ENST00000560715 ABCA13Q86UQ4 5058 aa3.27□□□□□ -1.89
TSPAN3-209ENST00000560715 FAT1Q14517 4588 aa3.26□□□□□ -1.89
TSPAN3-209ENST00000560715 HSPG2P98160 4391 aa3.25□□□□□ -1.89
TSPAN3-209ENST00000560715 KRTAP4-5Q9BYR2 181 aa3.25□□□□□ -1.89
TSPAN3-209ENST00000560715 KRTAP2-2Q9BYT5 123 aa3.24□□□□□ -1.89
TSPAN3-209ENST00000560715 C9orf92A6NGG3 77 aa3.21□□□□□ -1.9
TSPAN3-209ENST00000560715 TNXBP22105 4242 aa3.2□□□□□ -1.9
TSPAN3-209ENST00000560715 Q5VSD8 79 aa3.18□□□□□ -1.9
TSPAN3-209ENST00000560715 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
TSPAN3-209ENST00000560715 FAT3Q8TDW7 4589 aa3.16□□□□□ -1.9
TSPAN3-209ENST00000560715 M0QZ58 72 aa3.15□□□□□ -1.9
TSPAN3-209ENST00000560715 HERC1Q15751 4861 aa3.14□□□□□ -1.91
TSPAN3-209ENST00000560715 MT3P25713 68 aa3.14□□□□□ -1.91
TSPAN3-209ENST00000560715 LRP1Q07954 4544 aaKnown RBP3.14□□□□□ -1.91
TSPAN3-209ENST00000560715 KRTAP4-8Q9BYQ9 185 aa3.1□□□□□ -1.91
TSPAN3-209ENST00000560715 PP632Q6XCG6 107 aa3.09□□□□□ -1.91
TSPAN3-209ENST00000560715 MYCBP2O75592 4640 aa3.09□□□□□ -1.91
TSPAN3-209ENST00000560715 MT1HL1P0DM35 61 aa3.09□□□□□ -1.92
TSPAN3-209ENST00000560715 INE1O15225 51 aa3.08□□□□□ -1.92
TSPAN3-209ENST00000560715 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
TSPAN3-209ENST00000560715 SPRR5A0A1B0GTR4 108 aa3.04□□□□□ -1.92
TSPAN3-209ENST00000560715 KRTAP9-2Q9BYQ4 174 aa3.02□□□□□ -1.93
TSPAN3-209ENST00000560715 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.02□□□□□ -1.93
TSPAN3-209ENST00000560715 KRTAP10-12P60413 245 aa3.01□□□□□ -1.93
TSPAN3-209ENST00000560715 HMCN2Q8NDA2 5059 aa3.01□□□□□ -1.93
TSPAN3-209ENST00000560715 LCE1EQ5T753 118 aa2.98□□□□□ -1.93
TSPAN3-209ENST00000560715 LCE3BQ5TA77 95 aa2.98□□□□□ -1.93
TSPAN3-209ENST00000560715 KRTAP9-8Q9BYQ0 159 aa2.97□□□□□ -1.93
TSPAN3-209ENST00000560715 UBR4Q5T4S7 5183 aa2.95□□□□□ -1.94
TSPAN3-209ENST00000560715 LPAP08519 4548 aa2.94□□□□□ -1.94
TSPAN3-209ENST00000560715 LRP2P98164 4655 aa2.93□□□□□ -1.94
TSPAN3-209ENST00000560715 KRTAP4-8A0A0G2JLE6 195 aa2.88□□□□□ -1.95
TSPAN3-209ENST00000560715 MUC17Q685J3 4493 aa2.88□□□□□ -1.95
TSPAN3-209ENST00000560715 RNF213Q63HN8 5207 aa2.86□□□□□ -1.95
TSPAN3-209ENST00000560715 LCE1DQ5T752 114 aa2.82□□□□□ -1.96
TSPAN3-209ENST00000560715 TNP1P09430 55 aa2.82□□□□□ -1.96
TSPAN3-209ENST00000560715 KRTAP4-1Q9BYQ7 146 aa2.81□□□□□ -1.96
TSPAN3-209ENST00000560715 KRTAP4-7Q9BYR0 210 aa2.81□□□□□ -1.96
TSPAN3-209ENST00000560715 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
TSPAN3-209ENST00000560715 KRTAP10-10P60014 251 aa2.79□□□□□ -1.96
TSPAN3-209ENST00000560715 KRTAP19-2Q3LHN2 52 aa2.78□□□□□ -1.97
TSPAN3-209ENST00000560715 FLGP20930 4061 aaPredicted RBP2.73□□□□□ -1.97
TSPAN3-209ENST00000560715 KRTAP6-3Q3LI67 103 aa2.71□□□□□ -1.97
TSPAN3-209ENST00000560715 KRTAP4-9Q9BYQ8 210 aa2.71□□□□□ -1.97
TSPAN3-209ENST00000560715 FAT4Q6V0I7 4981 aa2.69□□□□□ -1.98
TSPAN3-209ENST00000560715 KRTAP10-7P60409 375 aaPredicted RBP2.69□□□□□ -1.98
TSPAN3-209ENST00000560715 MUC2Q02817 5179 aa2.68□□□□□ -1.98
TSPAN3-209ENST00000560715 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms