RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PKHD1L1Q86WI1 4243 aa6.07□□□□□ -1.44
CUX1-218ENST00000560541 RPS29P62273 56 aaKnown RBP6.07□□□□□ -1.44
CUX1-218ENST00000560541 H1FX-AS1Q4G0G2 97 aa6.02□□□□□ -1.45
CUX1-218ENST00000560541 LRP1Q07954 4544 aaKnown RBP5.99□□□□□ -1.45
CUX1-218ENST00000560541 KRTAP10-4P60372 401 aaPredicted RBP5.99□□□□□ -1.45
CUX1-218ENST00000560541 MYCBP2O75592 4640 aa5.97□□□□□ -1.45
CUX1-218ENST00000560541 A0A0D9SG42 100 aa5.95□□□□□ -1.46
CUX1-218ENST00000560541 A0A1B0GVY2 172 aa5.94□□□□□ -1.46
CUX1-218ENST00000560541 HSPG2P98160 4391 aa5.94□□□□□ -1.46
CUX1-218ENST00000560541 KMT2CQ8NEZ4 4911 aaKnown RBP5.93□□□□□ -1.46
CUX1-218ENST00000560541 FAT3Q8TDW7 4589 aa5.92□□□□□ -1.46
CUX1-218ENST00000560541 COX6B2Q6YFQ2 88 aa5.92□□□□□ -1.46
CUX1-218ENST00000560541 TNXBP22105 4242 aa5.89□□□□□ -1.47
CUX1-218ENST00000560541 RYR2Q92736 4967 aa5.88□□□□□ -1.47
CUX1-218ENST00000560541 RPL37P61927 97 aaKnown RBP5.83□□□□□ -1.48
CUX1-218ENST00000560541 KRTAP10-8P60410 259 aa5.81□□□□□ -1.48
CUX1-218ENST00000560541 KRTAP3-3Q9BYR6 98 aa5.79□□□□□ -1.48
CUX1-218ENST00000560541 KRTAP10-6P60371 365 aaPredicted RBP5.78□□□□□ -1.48
CUX1-218ENST00000560541 KRTAP13-4Q3LI77 160 aa5.78□□□□□ -1.48
CUX1-218ENST00000560541 LPAP08519 4548 aa5.76□□□□□ -1.49
CUX1-218ENST00000560541 XP32Q5T750 250 aa5.75□□□□□ -1.49
CUX1-218ENST00000560541 Q5VSD8 79 aa5.75□□□□□ -1.49
CUX1-218ENST00000560541 S4R3F8 94 aa5.73□□□□□ -1.49
CUX1-218ENST00000560541 KRTAP3-2Q9BYR7 98 aa5.72□□□□□ -1.49
CUX1-218ENST00000560541 KRTAP21-3Q3LHN1 58 aa5.71□□□□□ -1.5
CUX1-218ENST00000560541 SEC61BP60468 96 aaKnown RBP5.69□□□□□ -1.5
CUX1-218ENST00000560541 KRTAP17-1Q9BYP8 105 aa5.69□□□□□ -1.5
CUX1-218ENST00000560541 RYR3Q15413 4870 aa5.68□□□□□ -1.5
CUX1-218ENST00000560541 LRP2P98164 4655 aa5.67□□□□□ -1.5
CUX1-218ENST00000560541 KIAA1109Q2LD37 5005 aa5.67□□□□□ -1.5
CUX1-218ENST00000560541 RYR1P21817 5038 aa5.66□□□□□ -1.5
CUX1-218ENST00000560541 KRTAP12-2P59991 146 aa5.6□□□□□ -1.51
CUX1-218ENST00000560541 MT1HL1P0DM35 61 aa5.58□□□□□ -1.52
CUX1-218ENST00000560541 PLAC4Q8WY50 150 aa5.55□□□□□ -1.52
CUX1-218ENST00000560541 J3QL48 77 aa5.53□□□□□ -1.52
CUX1-218ENST00000560541 ABCA13Q86UQ4 5058 aa5.52□□□□□ -1.53
CUX1-218ENST00000560541 KRTAP12-1P59990 96 aa5.51□□□□□ -1.53
CUX1-218ENST00000560541 EPPK1P58107 5090 aaKnown RBP5.49□□□□□ -1.53
CUX1-218ENST00000560541 M0QZ58 72 aa5.41□□□□□ -1.54
CUX1-218ENST00000560541 KRTAP4-5Q9BYR2 181 aa5.37□□□□□ -1.55
CUX1-218ENST00000560541 R4GN34 69 aa5.36□□□□□ -1.55
CUX1-218ENST00000560541 MUC17Q685J3 4493 aa5.33□□□□□ -1.56
CUX1-218ENST00000560541 LORP23490 312 aaPredicted RBP5.32□□□□□ -1.56
CUX1-218ENST00000560541 MUC2Q02817 5179 aa5.29□□□□□ -1.56
CUX1-218ENST00000560541 KRTAP4-1Q9BYQ7 146 aa5.27□□□□□ -1.57
CUX1-218ENST00000560541 CAMK2N1Q7Z7J9 78 aa5.25□□□□□ -1.57
CUX1-218ENST00000560541 HERC2O95714 4834 aa5.19□□□□□ -1.58
CUX1-218ENST00000560541 PRO2289Q9P1D8 64 aa5.14□□□□□ -1.59
CUX1-218ENST00000560541 KRTAP19-2Q3LHN2 52 aa5.11□□□□□ -1.59
CUX1-218ENST00000560541 FLGP20930 4061 aaPredicted RBP5.06□□□□□ -1.6
CUX1-218ENST00000560541 PCLOQ9Y6V0 5065 aa5.04□□□□□ -1.6
CUX1-218ENST00000560541 FAT4Q6V0I7 4981 aa5.01□□□□□ -1.61
CUX1-218ENST00000560541 HERC1Q15751 4861 aa5.01□□□□□ -1.61
CUX1-218ENST00000560541 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
CUX1-218ENST00000560541 PP632Q6XCG6 107 aa4.94□□□□□ -1.62
CUX1-218ENST00000560541 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
CUX1-218ENST00000560541 TNP1P09430 55 aa4.88□□□□□ -1.63
CUX1-218ENST00000560541 SPRR5A0A1B0GTR4 108 aa4.83□□□□□ -1.64
CUX1-218ENST00000560541 RNF213Q63HN8 5207 aa4.83□□□□□ -1.64
CUX1-218ENST00000560541 INE1O15225 51 aa4.82□□□□□ -1.64
CUX1-218ENST00000560541 LCE2CQ5TA81 110 aa4.79□□□□□ -1.64
CUX1-218ENST00000560541 M0R2T5 61 aa4.78□□□□□ -1.64
CUX1-218ENST00000560541 UBR4Q5T4S7 5183 aa4.77□□□□□ -1.65
CUX1-218ENST00000560541 KRTAP19-1Q8IUB9 90 aa4.74□□□□□ -1.65
CUX1-218ENST00000560541 LCE2DQ5TA82 110 aaPredicted RBP4.73□□□□□ -1.65
CUX1-218ENST00000560541 SPRR2GQ9BYE4 73 aa4.72□□□□□ -1.65
CUX1-218ENST00000560541 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
CUX1-218ENST00000560541 MT1HP80294 61 aa4.67□□□□□ -1.66
CUX1-218ENST00000560541 KRTAP10-10P60014 251 aa4.66□□□□□ -1.66
CUX1-218ENST00000560541 LCE3AQ5TA76 89 aa4.65□□□□□ -1.66
CUX1-218ENST00000560541 MT1FP04733 61 aa4.65□□□□□ -1.67
CUX1-218ENST00000560541 MT2AP02795 61 aa4.62□□□□□ -1.67
CUX1-218ENST00000560541 KRTAP9-8Q9BYQ0 159 aa4.57□□□□□ -1.68
CUX1-218ENST00000560541 MT1BP07438 61 aa4.48□□□□□ -1.69
CUX1-218ENST00000560541 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
CUX1-218ENST00000560541 MT1XP80297 61 aa4.48□□□□□ -1.69
CUX1-218ENST00000560541 KRTAP19-8Q3LI54 63 aa4.47□□□□□ -1.69
CUX1-218ENST00000560541 KRTAP8-1Q8IUC2 63 aa4.45□□□□□ -1.7
CUX1-218ENST00000560541 KRTAP10-12P60413 245 aa4.42□□□□□ -1.7
CUX1-218ENST00000560541 KRTAP12-3P60328 96 aa4.41□□□□□ -1.7
CUX1-218ENST00000560541 KRTAP10-7P60409 375 aaPredicted RBP4.41□□□□□ -1.7
CUX1-218ENST00000560541 USH2AO75445 5202 aa4.39□□□□□ -1.71
CUX1-218ENST00000560541 KRTAP9-3Q9BYQ3 159 aa4.36□□□□□ -1.71
CUX1-218ENST00000560541 KMT2DO14686 5537 aa4.35□□□□□ -1.71
CUX1-218ENST00000560541 LCE2BO14633 110 aa4.23□□□□□ -1.73
CUX1-218ENST00000560541 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
CUX1-218ENST00000560541 LCE2AQ5TA79 106 aaPredicted RBP4.18□□□□□ -1.74
CUX1-218ENST00000560541 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
CUX1-218ENST00000560541 KRTAP4-8Q9BYQ9 185 aa4.16□□□□□ -1.74
CUX1-218ENST00000560541 LCE3CQ5T5A8 94 aa4.13□□□□□ -1.75
CUX1-218ENST00000560541 KRTAP9-6A8MVA2 160 aa4.05□□□□□ -1.76
CUX1-218ENST00000560541 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
CUX1-218ENST00000560541 FSIP2Q5CZC0 6907 aa3.99□□□□□ -1.77
CUX1-218ENST00000560541 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
CUX1-218ENST00000560541 SSPOA2VEC9 5147 aa3.9□□□□□ -1.79
CUX1-218ENST00000560541 MT1LQ93083 61 aa3.87□□□□□ -1.79
CUX1-218ENST00000560541 MT1EP04732 61 aa3.86□□□□□ -1.79
CUX1-218ENST00000560541 KRTAP2-3P0C7H8 128 aa3.84□□□□□ -1.79
CUX1-218ENST00000560541 KRTAP2-4Q9BYR9 128 aa3.84□□□□□ -1.79
CUX1-218ENST00000560541 KRTAP2-1Q9BYU5 128 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms