RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 IGKV2D-30A0A075B6S6 120 aa4.05□□□□□ -1.76
VPS13C-206ENST00000558338 C7orf65Q6ZTY9 151 aa4.05□□□□□ -1.76
VPS13C-206ENST00000558338 CDC42SE1Q9NRR8 79 aa4.05□□□□□ -1.76
VPS13C-206ENST00000558338 DYNC1H1Q14204 4646 aaKnown RBP4.04□□□□□ -1.76
VPS13C-206ENST00000558338 SMR3BP02814 79 aaPredicted RBP4.03□□□□□ -1.77
VPS13C-206ENST00000558338 ATP11AUNQ6ZP68 121 aa4.03□□□□□ -1.77
VPS13C-206ENST00000558338 LCA10Q71F78 164 aa4.02□□□□□ -1.77
VPS13C-206ENST00000558338 KRTAP10-4P60372 401 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-206ENST00000558338 C20orf166-AS1Q96NR2 134 aa4.01□□□□□ -1.77
VPS13C-206ENST00000558338 APOBP04114 4563 aaKnown RBP4.01□□□□□ -1.77
VPS13C-206ENST00000558338 PKHD1P08F94 4074 aa4□□□□□ -1.77
VPS13C-206ENST00000558338 PKHD1L1Q86WI1 4243 aa4□□□□□ -1.77
VPS13C-206ENST00000558338 A0A1B0GU69 56 aa4□□□□□ -1.77
VPS13C-206ENST00000558338 A8MUU9 505 aa4□□□□□ -1.77
VPS13C-206ENST00000558338 SPTSSBQ8NFR3 76 aa3.98□□□□□ -1.77
VPS13C-206ENST00000558338 SPINK7P58062 85 aa3.97□□□□□ -1.77
VPS13C-206ENST00000558338 Q8N1X5 172 aa3.97□□□□□ -1.77
VPS13C-206ENST00000558338 A8MU10 97 aa3.96□□□□□ -1.78
VPS13C-206ENST00000558338 C9orf92A6NGG3 77 aa3.95□□□□□ -1.78
VPS13C-206ENST00000558338 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.95□□□□□ -1.78
VPS13C-206ENST00000558338 RYR2Q92736 4967 aa3.94□□□□□ -1.78
VPS13C-206ENST00000558338 CAMK2N1Q7Z7J9 78 aa3.94□□□□□ -1.78
VPS13C-206ENST00000558338 UQCR11O14957 56 aa3.93□□□□□ -1.78
VPS13C-206ENST00000558338 LINC01554Q52M75 96 aa3.93□□□□□ -1.78
VPS13C-206ENST00000558338 A6NN06 94 aa3.92□□□□□ -1.78
VPS13C-206ENST00000558338 SPATA8Q6RVD6 105 aa3.91□□□□□ -1.78
VPS13C-206ENST00000558338 LUZP6Q538Z0 58 aa3.9□□□□□ -1.78
VPS13C-206ENST00000558338 ADM2Q7Z4H4 148 aa3.9□□□□□ -1.78
VPS13C-206ENST00000558338 FAT1Q14517 4588 aa3.9□□□□□ -1.79
VPS13C-206ENST00000558338 MIR22HGQ0VDD5 57 aa3.9□□□□□ -1.79
VPS13C-206ENST00000558338 Q5VSD8 79 aa3.9□□□□□ -1.79
VPS13C-206ENST00000558338 KRTAP10-8P60410 259 aa3.88□□□□□ -1.79
VPS13C-206ENST00000558338 COX6B2Q6YFQ2 88 aa3.86□□□□□ -1.79
VPS13C-206ENST00000558338 RPL37P61927 97 aaKnown RBP3.84□□□□□ -1.79
VPS13C-206ENST00000558338 FLG2Q5D862 2391 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-206ENST00000558338 TNXBP22105 4242 aa3.84□□□□□ -1.8
VPS13C-206ENST00000558338 FAT3Q8TDW7 4589 aa3.83□□□□□ -1.8
VPS13C-206ENST00000558338 KMT2CQ8NEZ4 4911 aaKnown RBP3.81□□□□□ -1.8
VPS13C-206ENST00000558338 HSPG2P98160 4391 aa3.81□□□□□ -1.8
VPS13C-206ENST00000558338 K7ERS5 55 aa3.8□□□□□ -1.8
VPS13C-206ENST00000558338 RYR1P21817 5038 aa3.78□□□□□ -1.8
VPS13C-206ENST00000558338 A0A1B0GU33 70 aa3.78□□□□□ -1.8
VPS13C-206ENST00000558338 H1FX-AS1Q4G0G2 97 aa3.78□□□□□ -1.8
VPS13C-206ENST00000558338 MT1HL1P0DM35 61 aa3.75□□□□□ -1.81
VPS13C-206ENST00000558338 H0YAA0 97 aa3.75□□□□□ -1.81
VPS13C-206ENST00000558338 LRP1Q07954 4544 aaKnown RBP3.74□□□□□ -1.81
VPS13C-206ENST00000558338 TPRXLQ17RH7 258 aa3.73□□□□□ -1.81
VPS13C-206ENST00000558338 S4R3F8 94 aa3.73□□□□□ -1.81
VPS13C-206ENST00000558338 RYR3Q15413 4870 aa3.7□□□□□ -1.82
VPS13C-206ENST00000558338 KRTAP15-1Q3LI76 137 aa3.67□□□□□ -1.82
VPS13C-206ENST00000558338 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
VPS13C-206ENST00000558338 KRTAP10-6P60371 365 aaPredicted RBP3.65□□□□□ -1.82
VPS13C-206ENST00000558338 DMBT1Q9UGM3 2413 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-206ENST00000558338 MYCBP2O75592 4640 aa3.62□□□□□ -1.83
VPS13C-206ENST00000558338 CSAG1Q6PB30 78 aa3.62□□□□□ -1.83
VPS13C-206ENST00000558338 KIAA1109Q2LD37 5005 aa3.61□□□□□ -1.83
VPS13C-206ENST00000558338 ROMO1P60602 79 aa3.6□□□□□ -1.83
VPS13C-206ENST00000558338 P0C880 135 aa3.57□□□□□ -1.84
VPS13C-206ENST00000558338 KRTAP13-4Q3LI77 160 aa3.57□□□□□ -1.84
VPS13C-206ENST00000558338 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
VPS13C-206ENST00000558338 M0QZ58 72 aa3.56□□□□□ -1.84
VPS13C-206ENST00000558338 KRTAP25-1Q3LHN0 102 aa3.56□□□□□ -1.84
VPS13C-206ENST00000558338 A0A0D9SG42 100 aa3.56□□□□□ -1.84
VPS13C-206ENST00000558338 EPPK1P58107 5090 aaKnown RBP3.54□□□□□ -1.84
VPS13C-206ENST00000558338 LRP2P98164 4655 aa3.52□□□□□ -1.85
VPS13C-206ENST00000558338 LPAP08519 4548 aa3.48□□□□□ -1.85
VPS13C-206ENST00000558338 KRTAP12-1P59990 96 aa3.47□□□□□ -1.85
VPS13C-206ENST00000558338 MUC17Q685J3 4493 aa3.47□□□□□ -1.85
VPS13C-206ENST00000558338 KRTAP12-2P59991 146 aa3.47□□□□□ -1.85
VPS13C-206ENST00000558338 SPINT4Q6UDR6 99 aa3.47□□□□□ -1.85
VPS13C-206ENST00000558338 R4GN34 69 aa3.45□□□□□ -1.86
VPS13C-206ENST00000558338 KRTAP10-7P60409 375 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-206ENST00000558338 KRTAP5-9P26371 169 aa3.43□□□□□ -1.86
VPS13C-206ENST00000558338 ABCA13Q86UQ4 5058 aa3.43□□□□□ -1.86
VPS13C-206ENST00000558338 CRIPTQ9P021 101 aa3.43□□□□□ -1.86
VPS13C-206ENST00000558338 KRTAP4-1Q9BYQ7 146 aa3.42□□□□□ -1.86
VPS13C-206ENST00000558338 HERC2O95714 4834 aa3.42□□□□□ -1.86
VPS13C-206ENST00000558338 BIRC6Q9NR09 4857 aa3.41□□□□□ -1.86
VPS13C-206ENST00000558338 KRTAP19-2Q3LHN2 52 aa3.39□□□□□ -1.87
VPS13C-206ENST00000558338 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.87
VPS13C-206ENST00000558338 C10orf95Q9H7T3 257 aa3.34□□□□□ -1.87
VPS13C-206ENST00000558338 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
VPS13C-206ENST00000558338 FLGP20930 4061 aaPredicted RBP3.31□□□□□ -1.88
VPS13C-206ENST00000558338 HERC1Q15751 4861 aa3.27□□□□□ -1.89
VPS13C-206ENST00000558338 PRO2289Q9P1D8 64 aa3.27□□□□□ -1.89
VPS13C-206ENST00000558338 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
VPS13C-206ENST00000558338 PP632Q6XCG6 107 aa3.24□□□□□ -1.89
VPS13C-206ENST00000558338 HMCN2Q8NDA2 5059 aa3.23□□□□□ -1.89
VPS13C-206ENST00000558338 PCLOQ9Y6V0 5065 aa3.2□□□□□ -1.9
VPS13C-206ENST00000558338 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
VPS13C-206ENST00000558338 M0R2T5 61 aa3.17□□□□□ -1.9
VPS13C-206ENST00000558338 TNP1P09430 55 aa3.17□□□□□ -1.9
VPS13C-206ENST00000558338 SPRR2GQ9BYE4 73 aa3.17□□□□□ -1.9
VPS13C-206ENST00000558338 PLAC4Q8WY50 150 aa3.16□□□□□ -1.9
VPS13C-206ENST00000558338 MT1HP80294 61 aa3.14□□□□□ -1.91
VPS13C-206ENST00000558338 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
VPS13C-206ENST00000558338 MUC2Q02817 5179 aa3.1□□□□□ -1.91
VPS13C-206ENST00000558338 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.92
VPS13C-206ENST00000558338 KRTAP10-10P60014 251 aa3.08□□□□□ -1.92
VPS13C-206ENST00000558338 MT2AP02795 61 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms