RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 MEGF8Q7Z7M0 2845 aa1.43□□□□□ -2.18
PRPF39-210ENST00000556718 USP9YO00507 2555 aaPredicted RBP1.43□□□□□ -2.18
PRPF39-210ENST00000556718 PDZD2O15018 2839 aa1.42□□□□□ -2.18
PRPF39-210ENST00000556718 FBN2P35556 2912 aa1.42□□□□□ -2.18
PRPF39-210ENST00000556718 Q5VSD8 79 aa1.42□□□□□ -2.18
PRPF39-210ENST00000556718 AKAP9Q99996 3911 aa1.42□□□□□ -2.18
PRPF39-210ENST00000556718 CCDC168Q8NDH2 2452 aa1.42□□□□□ -2.18
PRPF39-210ENST00000556718 TGP01266 2768 aa1.41□□□□□ -2.18
PRPF39-210ENST00000556718 SMR3AQ99954 134 aa1.41□□□□□ -2.18
PRPF39-210ENST00000556718 COL6A5A8TX70 2615 aa1.4□□□□□ -2.18
PRPF39-210ENST00000556718 HIVEP1P15822 2718 aa1.4□□□□□ -2.18
PRPF39-210ENST00000556718 MYO15AQ9UKN7 3530 aa1.4□□□□□ -2.18
PRPF39-210ENST00000556718 NBEAL1Q6ZS30 2694 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 TNP1P09430 55 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 LRRK2Q5S007 2527 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 MUC6Q6W4X9 2439 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 ABCA12Q86UK0 2595 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 PKD1L2Q7Z442 2459 aa1.4□□□□□ -2.19
PRPF39-210ENST00000556718 ZANQ9Y493 2812 aa1.39□□□□□ -2.19
PRPF39-210ENST00000556718 SETD2Q9BYW2 2564 aaPredicted RBP1.39□□□□□ -2.19
PRPF39-210ENST00000556718 ACACBO00763 2458 aa1.39□□□□□ -2.19
PRPF39-210ENST00000556718 EYSQ5T1H1 3165 aa1.38□□□□□ -2.19
PRPF39-210ENST00000556718 ITPR3Q14573 2671 aa1.38□□□□□ -2.19
PRPF39-210ENST00000556718 MYO18BQ8IUG5 2567 aa1.38□□□□□ -2.19
PRPF39-210ENST00000556718 ASPMQ8IZT6 3477 aa1.38□□□□□ -2.19
PRPF39-210ENST00000556718 ACANP16112 2415 aa1.37□□□□□ -2.19
PRPF39-210ENST00000556718 LAMA5O15230 3695 aa1.37□□□□□ -2.19
PRPF39-210ENST00000556718 TTC28Q96AY4 2481 aa1.37□□□□□ -2.19
PRPF39-210ENST00000556718 SVEP1Q4LDE5 3571 aa1.37□□□□□ -2.19
PRPF39-210ENST00000556718 FASNP49327 2511 aaKnown RBP1.36□□□□□ -2.19
PRPF39-210ENST00000556718 RELNP78509 3460 aa1.36□□□□□ -2.19
PRPF39-210ENST00000556718 PKD1L1Q8TDX9 2849 aa1.35□□□□□ -2.19
PRPF39-210ENST00000556718 FAM208BQ5VWN6 2430 aa1.35□□□□□ -2.19
PRPF39-210ENST00000556718 MAST4O15021 2626 aa1.35□□□□□ -2.19
PRPF39-210ENST00000556718 POLQO75417 2590 aa1.34□□□□□ -2.19
PRPF39-210ENST00000556718 FLNAP21333 2647 aaKnown RBP1.34□□□□□ -2.19
PRPF39-210ENST00000556718 COL7A1Q02388 2944 aa1.34□□□□□ -2.2
PRPF39-210ENST00000556718 ITPR2Q14571 2701 aa1.34□□□□□ -2.2
PRPF39-210ENST00000556718 ATRQ13535 2644 aa1.34□□□□□ -2.2
PRPF39-210ENST00000556718 FLNCQ14315 2725 aa1.33□□□□□ -2.2
PRPF39-210ENST00000556718 TEP1Q99973 2627 aaKnown RBP1.33□□□□□ -2.2
PRPF39-210ENST00000556718 DMBT1Q9UGM3 2413 aaPredicted RBP1.32□□□□□ -2.2
PRPF39-210ENST00000556718 BSNQ9UPA5 3926 aa1.32□□□□□ -2.2
PRPF39-210ENST00000556718 CACNA1AO00555 2505 aa1.32□□□□□ -2.2
PRPF39-210ENST00000556718 VPS13CQ709C8 3753 aa1.32□□□□□ -2.2
PRPF39-210ENST00000556718 LYSTQ99698 3801 aa1.32□□□□□ -2.2
PRPF39-210ENST00000556718 FLNBO75369 2602 aaKnown RBP1.31□□□□□ -2.2
PRPF39-210ENST00000556718 KRTAP10-4P60372 401 aaPredicted RBP1.31□□□□□ -2.2
PRPF39-210ENST00000556718 DNAH1Q9P2D7 4330 aa1.31□□□□□ -2.2
PRPF39-210ENST00000556718 STAB2Q8WWQ8 2551 aa1.31□□□□□ -2.2
PRPF39-210ENST00000556718 TENM3Q9P273 2699 aa1.29□□□□□ -2.2
PRPF39-210ENST00000556718 FRAS1Q86XX4 4008 aa1.29□□□□□ -2.2
PRPF39-210ENST00000556718 CSMD2Q7Z408 3487 aa1.29□□□□□ -2.2
PRPF39-210ENST00000556718 IGSF10Q6WRI0 2623 aa1.29□□□□□ -2.2
PRPF39-210ENST00000556718 VPS13DQ5THJ4 4388 aa1.29□□□□□ -2.2
PRPF39-210ENST00000556718 TENM1Q9UKZ4 2725 aa1.28□□□□□ -2.2
PRPF39-210ENST00000556718 TRRAPQ9Y4A5 3859 aa1.28□□□□□ -2.2
PRPF39-210ENST00000556718 CMYA5Q8N3K9 4069 aa1.28□□□□□ -2.2
PRPF39-210ENST00000556718 USP24Q9UPU5 2620 aa1.28□□□□□ -2.2
PRPF39-210ENST00000556718 NSD1Q96L73 2696 aaPredicted RBP1.28□□□□□ -2.2
PRPF39-210ENST00000556718 MUC3AQ02505 3323 aa1.28□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH3Q8TD57 4116 aa1.28□□□□□ -2.21
PRPF39-210ENST00000556718 NOTCH1P46531 2555 aa1.27□□□□□ -2.21
PRPF39-210ENST00000556718 ANK3Q12955 4377 aaKnown RBP1.27□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH8Q96JB1 4490 aa1.27□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH9Q9NYC9 4486 aa1.26□□□□□ -2.21
PRPF39-210ENST00000556718 SMR3BP02814 79 aaPredicted RBP1.25□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH10Q8IVF4 4471 aa1.24□□□□□ -2.21
PRPF39-210ENST00000556718 STAB1Q9NY15 2570 aa1.24□□□□□ -2.21
PRPF39-210ENST00000556718 ANK2Q01484 3957 aa1.23□□□□□ -2.21
PRPF39-210ENST00000556718 CUBNO60494 3623 aa1.23□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH6Q9C0G6 4158 aa1.23□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH17Q9UFH2 4485 aa1.23□□□□□ -2.21
PRPF39-210ENST00000556718 DYNC2H1Q8NCM8 4307 aaKnown RBP1.23□□□□□ -2.21
PRPF39-210ENST00000556718 HECTD4Q9Y4D8 3996 aa1.23□□□□□ -2.21
PRPF39-210ENST00000556718 MGAM2Q2M2H8 2515 aa1.22□□□□□ -2.21
PRPF39-210ENST00000556718 DNAH11Q96DT5 4516 aa1.22□□□□□ -2.21
PRPF39-210ENST00000556718 CSMD3Q7Z407 3707 aa1.21□□□□□ -2.22
PRPF39-210ENST00000556718 DNAH2Q9P225 4427 aa1.21□□□□□ -2.22
PRPF39-210ENST00000556718 DNAH7Q8WXX0 4024 aa1.2□□□□□ -2.22
PRPF39-210ENST00000556718 MYCBP2O75592 4640 aa1.2□□□□□ -2.22
PRPF39-210ENST00000556718 PRKDCP78527 4128 aaKnown RBP1.19□□□□□ -2.22
PRPF39-210ENST00000556718 KRTAP8-1Q8IUC2 63 aa1.19□□□□□ -2.22
PRPF39-210ENST00000556718 HUWE1Q7Z6Z7 4374 aaKnown RBP1.17□□□□□ -2.22
PRPF39-210ENST00000556718 M0R2T5 61 aa1.17□□□□□ -2.22
PRPF39-210ENST00000556718 KMT2AQ03164 3969 aa1.16□□□□□ -2.22
PRPF39-210ENST00000556718 SACSQ9NZJ4 4579 aa1.15□□□□□ -2.22
PRPF39-210ENST00000556718 PLECQ15149 4684 aaKnown RBP1.15□□□□□ -2.23
PRPF39-210ENST00000556718 LRP1BQ9NZR2 4599 aa1.13□□□□□ -2.23
PRPF39-210ENST00000556718 APOBP04114 4563 aaKnown RBP1.12□□□□□ -2.23
PRPF39-210ENST00000556718 ZNF469Q96JG9 3925 aaPredicted RBP1.12□□□□□ -2.23
PRPF39-210ENST00000556718 DYNC1H1Q14204 4646 aaKnown RBP1.12□□□□□ -2.23
PRPF39-210ENST00000556718 STARD9Q9P2P6 4700 aa1.11□□□□□ -2.23
PRPF39-210ENST00000556718 FLGP20930 4061 aaPredicted RBP1.11□□□□□ -2.23
PRPF39-210ENST00000556718 LRP1Q07954 4544 aaKnown RBP1.11□□□□□ -2.23
PRPF39-210ENST00000556718 SPRR2GQ9BYE4 73 aa1.11□□□□□ -2.23
PRPF39-210ENST00000556718 PKD1P98161 4303 aa1.11□□□□□ -2.23
PRPF39-210ENST00000556718 DNAH5Q8TE73 4624 aa1.11□□□□□ -2.23
PRPF39-210ENST00000556718 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
PRPF39-210ENST00000556718 VPS13BQ7Z7G8 4022 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms