RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KRTAP10-8P60410 259 aa7.65□□□□□ -1.18
CUX1-215ENST00000556210 R4GN34 69 aa7.65□□□□□ -1.18
CUX1-215ENST00000556210 M0QZ58 72 aa7.63□□□□□ -1.19
CUX1-215ENST00000556210 P0C880 135 aa7.63□□□□□ -1.19
CUX1-215ENST00000556210 C10orf95Q9H7T3 257 aa7.61□□□□□ -1.19
CUX1-215ENST00000556210 KRTAP10-4P60372 401 aaPredicted RBP7.6□□□□□ -1.19
CUX1-215ENST00000556210 LUZP6Q538Z0 58 aa7.57□□□□□ -1.2
CUX1-215ENST00000556210 LRP1Q07954 4544 aaKnown RBP7.56□□□□□ -1.2
CUX1-215ENST00000556210 A0A0A0MQY5 61 aa7.54□□□□□ -1.2
CUX1-215ENST00000556210 SEC61BP60468 96 aaKnown RBP7.54□□□□□ -1.2
CUX1-215ENST00000556210 FAT3Q8TDW7 4589 aa7.53□□□□□ -1.2
CUX1-215ENST00000556210 CAMK2N1Q7Z7J9 78 aa7.52□□□□□ -1.21
CUX1-215ENST00000556210 KIAA1109Q2LD37 5005 aa7.51□□□□□ -1.21
CUX1-215ENST00000556210 ALMS1Q8TCU4 4167 aa7.46□□□□□ -1.21
CUX1-215ENST00000556210 SACSQ9NZJ4 4579 aa7.46□□□□□ -1.21
CUX1-215ENST00000556210 M0R2T5 61 aa7.45□□□□□ -1.22
CUX1-215ENST00000556210 APOBP04114 4563 aaKnown RBP7.44□□□□□ -1.22
CUX1-215ENST00000556210 KRTAP13-4Q3LI77 160 aa7.43□□□□□ -1.22
CUX1-215ENST00000556210 RYR1P21817 5038 aa7.42□□□□□ -1.22
CUX1-215ENST00000556210 KMT2CQ8NEZ4 4911 aaKnown RBP7.42□□□□□ -1.22
CUX1-215ENST00000556210 KRTAP4-5Q9BYR2 181 aa7.42□□□□□ -1.22
CUX1-215ENST00000556210 FAT2Q9NYQ8 4349 aa7.4□□□□□ -1.22
CUX1-215ENST00000556210 TPRXLQ17RH7 258 aa7.39□□□□□ -1.23
CUX1-215ENST00000556210 KRTAP10-6P60371 365 aaPredicted RBP7.38□□□□□ -1.23
CUX1-215ENST00000556210 MT1HL1P0DM35 61 aa7.38□□□□□ -1.23
CUX1-215ENST00000556210 RYR3Q15413 4870 aa7.33□□□□□ -1.24
CUX1-215ENST00000556210 KRTAP3-3Q9BYR6 98 aa7.32□□□□□ -1.24
CUX1-215ENST00000556210 KRTAP12-2P59991 146 aa7.32□□□□□ -1.24
CUX1-215ENST00000556210 PKD1P98161 4303 aa7.26□□□□□ -1.25
CUX1-215ENST00000556210 KRTAP17-1Q9BYP8 105 aa7.26□□□□□ -1.25
CUX1-215ENST00000556210 KRTAP3-2Q9BYR7 98 aa7.24□□□□□ -1.25
CUX1-215ENST00000556210 KRTAP12-1P59990 96 aa7.2□□□□□ -1.26
CUX1-215ENST00000556210 RYR2Q92736 4967 aa7.17□□□□□ -1.26
CUX1-215ENST00000556210 LRP2P98164 4655 aa7.16□□□□□ -1.26
CUX1-215ENST00000556210 PLAC4Q8WY50 150 aa7.05□□□□□ -1.28
CUX1-215ENST00000556210 HSPG2P98160 4391 aa7.03□□□□□ -1.28
CUX1-215ENST00000556210 KRTAP15-1Q3LI76 137 aa7.03□□□□□ -1.28
CUX1-215ENST00000556210 LPAP08519 4548 aa6.99□□□□□ -1.29
CUX1-215ENST00000556210 LORP23490 312 aaPredicted RBP6.98□□□□□ -1.29
CUX1-215ENST00000556210 EPPK1P58107 5090 aaKnown RBP6.91□□□□□ -1.3
CUX1-215ENST00000556210 KRTAP4-1Q9BYQ7 146 aa6.91□□□□□ -1.3
CUX1-215ENST00000556210 PKHD1L1Q86WI1 4243 aa6.89□□□□□ -1.31
CUX1-215ENST00000556210 HERC2O95714 4834 aa6.84□□□□□ -1.31
CUX1-215ENST00000556210 TNP1P09430 55 aa6.83□□□□□ -1.32
CUX1-215ENST00000556210 KRTAP10-10P60014 251 aa6.83□□□□□ -1.32
CUX1-215ENST00000556210 PP632Q6XCG6 107 aa6.8□□□□□ -1.32
CUX1-215ENST00000556210 ABCA13Q86UQ4 5058 aa6.78□□□□□ -1.32
CUX1-215ENST00000556210 MUC2Q02817 5179 aa6.78□□□□□ -1.32
CUX1-215ENST00000556210 TNXBP22105 4242 aa6.74□□□□□ -1.33
CUX1-215ENST00000556210 HERC1Q15751 4861 aa6.52□□□□□ -1.37
CUX1-215ENST00000556210 RNF213Q63HN8 5207 aa6.51□□□□□ -1.37
CUX1-215ENST00000556210 FAT4Q6V0I7 4981 aa6.48□□□□□ -1.37
CUX1-215ENST00000556210 PCLOQ9Y6V0 5065 aa6.38□□□□□ -1.39
CUX1-215ENST00000556210 BIRC6Q9NR09 4857 aa6.29□□□□□ -1.4
CUX1-215ENST00000556210 UBR4Q5T4S7 5183 aa6.28□□□□□ -1.4
CUX1-215ENST00000556210 MT1HP80294 61 aa6.24□□□□□ -1.41
CUX1-215ENST00000556210 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
CUX1-215ENST00000556210 MT1FP04733 61 aa6.19□□□□□ -1.42
CUX1-215ENST00000556210 KRTAP19-2Q3LHN2 52 aa6.17□□□□□ -1.42
CUX1-215ENST00000556210 MT2AP02795 61 aa6.17□□□□□ -1.42
CUX1-215ENST00000556210 PRO2289Q9P1D8 64 aa6.15□□□□□ -1.43
CUX1-215ENST00000556210 MUC17Q685J3 4493 aa6.13□□□□□ -1.43
CUX1-215ENST00000556210 KRTAP23-1A1A580 65 aa6.11□□□□□ -1.43
CUX1-215ENST00000556210 KRTAP19-1Q8IUB9 90 aa6.1□□□□□ -1.43
CUX1-215ENST00000556210 FSIP2Q5CZC0 6907 aa6.09□□□□□ -1.43
CUX1-215ENST00000556210 LCE2CQ5TA81 110 aa6.09□□□□□ -1.43
CUX1-215ENST00000556210 HMCN2Q8NDA2 5059 aa6.07□□□□□ -1.44
CUX1-215ENST00000556210 KRTAP10-12P60413 245 aa6.06□□□□□ -1.44
CUX1-215ENST00000556210 SPRR2GQ9BYE4 73 aa6.06□□□□□ -1.44
CUX1-215ENST00000556210 FLGP20930 4061 aaPredicted RBP6.06□□□□□ -1.44
CUX1-215ENST00000556210 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
CUX1-215ENST00000556210 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
CUX1-215ENST00000556210 SPRR5A0A1B0GTR4 108 aa5.84□□□□□ -1.47
CUX1-215ENST00000556210 INE1O15225 51 aa5.84□□□□□ -1.47
CUX1-215ENST00000556210 USH2AO75445 5202 aa5.83□□□□□ -1.48
CUX1-215ENST00000556210 KRTAP10-7P60409 375 aaPredicted RBP5.82□□□□□ -1.48
CUX1-215ENST00000556210 MT1BP07438 61 aa5.79□□□□□ -1.48
CUX1-215ENST00000556210 MT1XP80297 61 aa5.77□□□□□ -1.49
CUX1-215ENST00000556210 KRTAP10-5P60370 271 aa5.74□□□□□ -1.49
CUX1-215ENST00000556210 KRTAP8-1Q8IUC2 63 aa5.71□□□□□ -1.5
CUX1-215ENST00000556210 CRCT1Q9UGL9 99 aa5.7□□□□□ -1.5
CUX1-215ENST00000556210 KRTAP19-8Q3LI54 63 aa5.69□□□□□ -1.5
CUX1-215ENST00000556210 KRTAP19-5Q3LI72 72 aa5.66□□□□□ -1.5
CUX1-215ENST00000556210 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
CUX1-215ENST00000556210 KRTAP4-8Q9BYQ9 185 aa5.66□□□□□ -1.5
CUX1-215ENST00000556210 KRTAP9-3Q9BYQ3 159 aa5.65□□□□□ -1.51
CUX1-215ENST00000556210 KMT2DO14686 5537 aa5.64□□□□□ -1.51
CUX1-215ENST00000556210 LCE2BO14633 110 aa5.57□□□□□ -1.52
CUX1-215ENST00000556210 OBSCNQ5VST9 7968 aa5.5□□□□□ -1.53
CUX1-215ENST00000556210 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
CUX1-215ENST00000556210 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
CUX1-215ENST00000556210 LCE3CQ5T5A8 94 aa5.41□□□□□ -1.54
CUX1-215ENST00000556210 SYNE1Q8NF91 8797 aaKnown RBP5.39□□□□□ -1.55
CUX1-215ENST00000556210 FCGBPQ9Y6R7 5405 aaPredicted RBP5.28□□□□□ -1.56
CUX1-215ENST00000556210 LCE2AQ5TA79 106 aaPredicted RBP5.2□□□□□ -1.58
CUX1-215ENST00000556210 SPRR2FQ96RM1 72 aa5.18□□□□□ -1.58
CUX1-215ENST00000556210 MT1GP13640 62 aa5.12□□□□□ -1.59
CUX1-215ENST00000556210 MUC12Q9UKN1 5478 aa5.1□□□□□ -1.59
CUX1-215ENST00000556210 KRTAP4-3Q9BYR4 195 aa5.09□□□□□ -1.6
CUX1-215ENST00000556210 KRTAP19-7Q3SYF9 63 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms