RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CRIPTQ9P021 101 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 ABCA1O95477 2261 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 DNAH9Q9NYC9 4486 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 KNTC1P50748 2209 aa0.84□□□□□ -2.27
VRK1-202ENST00000553683 CEP192Q8TEP8 1941 aa0.84□□□□□ -2.27
VRK1-202ENST00000553683 RPL39P62891 51 aaKnown RBP0.84□□□□□ -2.27
VRK1-202ENST00000553683 PRB3Q04118 309 aaPredicted RBP0.84□□□□□ -2.27
VRK1-202ENST00000553683 RPL39LQ96EH5 51 aaKnown RBP0.84□□□□□ -2.27
VRK1-202ENST00000553683 ANK3Q12955 4377 aaKnown RBP0.83□□□□□ -2.28
VRK1-202ENST00000553683 HUWE1Q7Z6Z7 4374 aaKnown RBP0.83□□□□□ -2.28
VRK1-202ENST00000553683 CACNA1CQ13936 2221 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 H0YAA0 97 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 CCL22O00626 93 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 PIGYQ3MUY2 71 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 SPINK9Q5DT21 86 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 ALPK2Q86TB3 2170 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 F5P12259 2224 aa0.83□□□□□ -2.28
VRK1-202ENST00000553683 IGLV5-48A0A075B6I7 105 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 SPTY2D1-AS1A0A0U1RR47 76 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 K7EQZ3 153 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 PRCDQ00LT1 54 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 FAT2Q9NYQ8 4349 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 PLECQ15149 4684 aaKnown RBP0.82□□□□□ -2.28
VRK1-202ENST00000553683 KMT2DO14686 5537 aa0.82□□□□□ -2.28
VRK1-202ENST00000553683 MYCBP2O75592 4640 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 WNK2Q9Y3S1 2297 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 PLCE1Q9P212 2302 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 LYNX1P0DP58 116 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 RPL37P61927 97 aaKnown RBP0.81□□□□□ -2.28
VRK1-202ENST00000553683 COX6A2Q02221 97 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 COX6B2Q6YFQ2 88 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 LEAP2Q969E1 77 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 TP53AIP1Q9HCN2 124 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 DSTQ03001 7570 aaKnown RBP0.81□□□□□ -2.28
VRK1-202ENST00000553683 LRP2P98164 4655 aa0.81□□□□□ -2.28
VRK1-202ENST00000553683 M0QY20 66 aa0.8□□□□□ -2.28
VRK1-202ENST00000553683 C10orf95Q9H7T3 257 aa0.8□□□□□ -2.28
VRK1-202ENST00000553683 C6orf48Q9UBA6 75 aa0.8□□□□□ -2.28
VRK1-202ENST00000553683 ALMS1Q8TCU4 4167 aa0.8□□□□□ -2.28
VRK1-202ENST00000553683 MUC12Q9UKN1 5478 aa0.8□□□□□ -2.28
VRK1-202ENST00000553683 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
VRK1-202ENST00000553683 USH2AO75445 5202 aa0.79□□□□□ -2.28
VRK1-202ENST00000553683 DNAH10Q8IVF4 4471 aa0.79□□□□□ -2.28
VRK1-202ENST00000553683 LELP1Q5T871 98 aa0.79□□□□□ -2.28
VRK1-202ENST00000553683 MINOS1Q5TGZ0 78 aa0.79□□□□□ -2.28
VRK1-202ENST00000553683 DEFB106AQ8N104 65 aa0.79□□□□□ -2.28
VRK1-202ENST00000553683 MRPL34Q9BQ48 92 aaKnown RBP0.79□□□□□ -2.28
VRK1-202ENST00000553683 DEFB130BP0DP73 79 aa0.78□□□□□ -2.28
VRK1-202ENST00000553683 DEFB130AP0DP74 79 aa0.78□□□□□ -2.28
VRK1-202ENST00000553683 WFDC13Q8IUB5 93 aa0.78□□□□□ -2.28
VRK1-202ENST00000553683 ROS1P08922 2347 aa0.78□□□□□ -2.28
VRK1-202ENST00000553683 STARD9Q9P2P6 4700 aa0.78□□□□□ -2.29
VRK1-202ENST00000553683 PKD1P98161 4303 aa0.78□□□□□ -2.29
VRK1-202ENST00000553683 DNAH6Q9C0G6 4158 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 MMP24-AS1A0A0U1RRL7 71 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 WT1-ASQ06250 92 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 SPINK13Q1W4C9 94 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 H1FX-AS1Q4G0G2 97 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 KRTAP5-10Q6L8G5 202 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 UNQ6190/PRO20217Q6UXQ8 127 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 WFDC10BQ8IUB3 73 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 PKHD1L1Q86WI1 4243 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 FAT3Q8TDW7 4589 aa0.77□□□□□ -2.29
VRK1-202ENST00000553683 USF3Q68DE3 2245 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 VPS13BQ7Z7G8 4022 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 A8MTW9 85 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 K7EIM0 57 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 KRTAP2-3P0C7H8 128 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 UBE2DNLQ8IWF7 75 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 TMEM167AQ8TBQ9 72 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 KRTAP2-4Q9BYR9 128 aa0.76□□□□□ -2.29
VRK1-202ENST00000553683 FAT1Q14517 4588 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 LRP1BQ9NZR2 4599 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 K7EIL1 84 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 CLPSL2Q6UWE3 100 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 DEFB104AQ8WTQ1 72 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 USMG5Q96IX5 58 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 KAAG1Q9UBP8 84 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 DNAH3Q8TD57 4116 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 MDN1Q9NU22 5596 aa0.75□□□□□ -2.29
VRK1-202ENST00000553683 APOBP04114 4563 aaKnown RBP0.74□□□□□ -2.29
VRK1-202ENST00000553683 DEFB131AP59861 70 aa0.74□□□□□ -2.29
VRK1-202ENST00000553683 RPL39P5Q59GN2 51 aa0.74□□□□□ -2.29
VRK1-202ENST00000553683 HRNRQ86YZ3 2850 aaPredicted RBP0.74□□□□□ -2.29
VRK1-202ENST00000553683 DEFB108AA8MXU0 73 aa0.73□□□□□ -2.29
VRK1-202ENST00000553683 SPRR1AP35321 89 aa0.73□□□□□ -2.29
VRK1-202ENST00000553683 KRTAP10-4P60372 401 aaPredicted RBP0.73□□□□□ -2.29
VRK1-202ENST00000553683 KLK9Q2XQG4 91 aa0.73□□□□□ -2.29
VRK1-202ENST00000553683 LRP1Q07954 4544 aaKnown RBP0.73□□□□□ -2.29
VRK1-202ENST00000553683 VPS13DQ5THJ4 4388 aa0.73□□□□□ -2.29
VRK1-202ENST00000553683 DNAH5Q8TE73 4624 aa0.72□□□□□ -2.29
VRK1-202ENST00000553683 DNAH11Q96DT5 4516 aa0.72□□□□□ -2.29
VRK1-202ENST00000553683 HMCN1Q96RW7 5635 aa0.72□□□□□ -2.29
VRK1-202ENST00000553683 DEFB109BQ30KR1 87 aa0.72□□□□□ -2.29
VRK1-202ENST00000553683 MUC5ACP98088 5654 aa0.72□□□□□ -2.29
VRK1-202ENST00000553683 KRTAP2-1Q9BYU5 128 aa0.71□□□□□ -2.3
VRK1-202ENST00000553683 TOMM7Q9P0U1 55 aa0.71□□□□□ -2.3
VRK1-202ENST00000553683 DNAH2Q9P225 4427 aa0.71□□□□□ -2.3
VRK1-202ENST00000553683 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
VRK1-202ENST00000553683 SPRR1BP22528 89 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms