RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 IGKV2D-30A0A075B6S6 120 aa3.05□□□□□ -1.92
LIMA1-212ENST00000552491 KRTAP1-4P0C5Y4 121 aa3.04□□□□□ -1.92
LIMA1-212ENST00000552491 MIR22HGQ0VDD5 57 aa3.04□□□□□ -1.92
LIMA1-212ENST00000552491 LY6G6CO95867 125 aa3.04□□□□□ -1.92
LIMA1-212ENST00000552491 KRTAP10-1P60331 282 aa3.04□□□□□ -1.92
LIMA1-212ENST00000552491 PKHD1P08F94 4074 aa3.03□□□□□ -1.92
LIMA1-212ENST00000552491 Q6ZSA8 131 aa3.02□□□□□ -1.93
LIMA1-212ENST00000552491 SACSQ9NZJ4 4579 aa3□□□□□ -1.93
LIMA1-212ENST00000552491 SPINK1P00995 79 aa2.99□□□□□ -1.93
LIMA1-212ENST00000552491 TYMSOSQ8TAI1 123 aa2.98□□□□□ -1.93
LIMA1-212ENST00000552491 PKHD1L1Q86WI1 4243 aa2.97□□□□□ -1.93
LIMA1-212ENST00000552491 LINC01554Q52M75 96 aa2.97□□□□□ -1.93
LIMA1-212ENST00000552491 FAT1Q14517 4588 aa2.97□□□□□ -1.93
LIMA1-212ENST00000552491 RPS29P62273 56 aaKnown RBP2.95□□□□□ -1.94
LIMA1-212ENST00000552491 CSAG1Q6PB30 78 aa2.95□□□□□ -1.94
LIMA1-212ENST00000552491 DYNC1H1Q14204 4646 aaKnown RBP2.94□□□□□ -1.94
LIMA1-212ENST00000552491 H0YAA0 97 aa2.94□□□□□ -1.94
LIMA1-212ENST00000552491 LINC00304Q8N9R0 145 aa2.94□□□□□ -1.94
LIMA1-212ENST00000552491 APOBP04114 4563 aaKnown RBP2.93□□□□□ -1.94
LIMA1-212ENST00000552491 C9orf92A6NGG3 77 aa2.93□□□□□ -1.94
LIMA1-212ENST00000552491 A8MUU9 505 aa2.91□□□□□ -1.94
LIMA1-212ENST00000552491 C20orf166-AS1Q96NR2 134 aa2.91□□□□□ -1.94
LIMA1-212ENST00000552491 KMT2CQ8NEZ4 4911 aaKnown RBP2.9□□□□□ -1.94
LIMA1-212ENST00000552491 FLG2Q5D862 2391 aaPredicted RBP2.9□□□□□ -1.94
LIMA1-212ENST00000552491 A0A1B0GU33 70 aa2.9□□□□□ -1.94
LIMA1-212ENST00000552491 SMR3BP02814 79 aaPredicted RBP2.9□□□□□ -1.94
LIMA1-212ENST00000552491 H1FX-AS1Q4G0G2 97 aa2.89□□□□□ -1.95
LIMA1-212ENST00000552491 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-212ENST00000552491 HSPG2P98160 4391 aa2.87□□□□□ -1.95
LIMA1-212ENST00000552491 KRTAP10-4P60372 401 aaPredicted RBP2.86□□□□□ -1.95
LIMA1-212ENST00000552491 KRTAP25-1Q3LHN0 102 aa2.86□□□□□ -1.95
LIMA1-212ENST00000552491 LRP1Q07954 4544 aaKnown RBP2.86□□□□□ -1.95
LIMA1-212ENST00000552491 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
LIMA1-212ENST00000552491 TNXBP22105 4242 aa2.86□□□□□ -1.95
LIMA1-212ENST00000552491 COX6B2Q6YFQ2 88 aa2.85□□□□□ -1.95
LIMA1-212ENST00000552491 RYR3Q15413 4870 aa2.85□□□□□ -1.95
LIMA1-212ENST00000552491 MYCBP2O75592 4640 aa2.85□□□□□ -1.95
LIMA1-212ENST00000552491 RYR2Q92736 4967 aa2.84□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP23-1A1A580 65 aa2.84□□□□□ -1.96
LIMA1-212ENST00000552491 K7ERS5 55 aa2.84□□□□□ -1.96
LIMA1-212ENST00000552491 DMBT1Q9UGM3 2413 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-212ENST00000552491 CRIPTQ9P021 101 aa2.83□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP15-1Q3LI76 137 aa2.82□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-212ENST00000552491 A0A1B0GVY2 172 aa2.8□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP10-6P60371 365 aaPredicted RBP2.8□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP13-4Q3LI77 160 aa2.8□□□□□ -1.96
LIMA1-212ENST00000552491 A0A0A0MQY5 61 aa2.8□□□□□ -1.96
LIMA1-212ENST00000552491 ROMO1P60602 79 aa2.79□□□□□ -1.96
LIMA1-212ENST00000552491 KRTAP10-8P60410 259 aa2.78□□□□□ -1.96
LIMA1-212ENST00000552491 RPL37P61927 97 aaKnown RBP2.78□□□□□ -1.96
LIMA1-212ENST00000552491 LPAP08519 4548 aa2.77□□□□□ -1.97
LIMA1-212ENST00000552491 EPPK1P58107 5090 aaKnown RBP2.76□□□□□ -1.97
LIMA1-212ENST00000552491 A0A0D9SG42 100 aa2.76□□□□□ -1.97
LIMA1-212ENST00000552491 P0C880 135 aa2.75□□□□□ -1.97
LIMA1-212ENST00000552491 TPRXLQ17RH7 258 aa2.74□□□□□ -1.97
LIMA1-212ENST00000552491 KRTAP5-11Q6L8G4 156 aa2.74□□□□□ -1.97
LIMA1-212ENST00000552491 S4R3F8 94 aa2.74□□□□□ -1.97
LIMA1-212ENST00000552491 BIRC6Q9NR09 4857 aa2.72□□□□□ -1.97
LIMA1-212ENST00000552491 C10orf95Q9H7T3 257 aa2.72□□□□□ -1.97
LIMA1-212ENST00000552491 LRP2P98164 4655 aa2.71□□□□□ -1.98
LIMA1-212ENST00000552491 KRTAP12-2P59991 146 aa2.7□□□□□ -1.98
LIMA1-212ENST00000552491 KRTAP10-7P60409 375 aaPredicted RBP2.7□□□□□ -1.98
LIMA1-212ENST00000552491 RYR1P21817 5038 aa2.69□□□□□ -1.98
LIMA1-212ENST00000552491 Q5VSD8 79 aa2.67□□□□□ -1.98
LIMA1-212ENST00000552491 SPINT4Q6UDR6 99 aa2.67□□□□□ -1.98
LIMA1-212ENST00000552491 KIAA1109Q2LD37 5005 aa2.67□□□□□ -1.98
LIMA1-212ENST00000552491 KRTAP12-1P59990 96 aa2.66□□□□□ -1.98
LIMA1-212ENST00000552491 MT1HL1P0DM35 61 aa2.65□□□□□ -1.99
LIMA1-212ENST00000552491 M0QZ58 72 aa2.64□□□□□ -1.99
LIMA1-212ENST00000552491 HERC2O95714 4834 aa2.63□□□□□ -1.99
LIMA1-212ENST00000552491 ABCA13Q86UQ4 5058 aa2.62□□□□□ -1.99
LIMA1-212ENST00000552491 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
LIMA1-212ENST00000552491 MUC17Q685J3 4493 aa2.58□□□□□ -2
LIMA1-212ENST00000552491 NDUFAF8A1L188 74 aa2.58□□□□□ -2
LIMA1-212ENST00000552491 LCE1AQ5T7P2 110 aa2.56□□□□□ -2
LIMA1-212ENST00000552491 SEC61BP60468 96 aaKnown RBP2.55□□□□□ -2
LIMA1-212ENST00000552491 R4GN34 69 aa2.55□□□□□ -2
LIMA1-212ENST00000552491 KRTAP4-1Q9BYQ7 146 aa2.52□□□□□ -2.01
LIMA1-212ENST00000552491 MUC2Q02817 5179 aa2.49□□□□□ -2.01
LIMA1-212ENST00000552491 KRTAP19-2Q3LHN2 52 aa2.48□□□□□ -2.01
LIMA1-212ENST00000552491 PLAC4Q8WY50 150 aa2.48□□□□□ -2.01
LIMA1-212ENST00000552491 KRTAP5-9P26371 169 aa2.47□□□□□ -2.01
LIMA1-212ENST00000552491 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
LIMA1-212ENST00000552491 KRTAP2-2Q9BYT5 123 aa2.46□□□□□ -2.02
LIMA1-212ENST00000552491 HERC1Q15751 4861 aa2.46□□□□□ -2.02
LIMA1-212ENST00000552491 LCE1EQ5T753 118 aa2.45□□□□□ -2.02
LIMA1-212ENST00000552491 FLGP20930 4061 aaPredicted RBP2.45□□□□□ -2.02
LIMA1-212ENST00000552491 PP632Q6XCG6 107 aa2.45□□□□□ -2.02
LIMA1-212ENST00000552491 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
LIMA1-212ENST00000552491 CAMK2N1Q7Z7J9 78 aa2.42□□□□□ -2.02
LIMA1-212ENST00000552491 LUZP6Q538Z0 58 aa2.38□□□□□ -2.03
LIMA1-212ENST00000552491 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
LIMA1-212ENST00000552491 KRTAP5-4Q6L8H1 288 aa2.37□□□□□ -2.03
LIMA1-212ENST00000552491 HMCN2Q8NDA2 5059 aa2.37□□□□□ -2.03
LIMA1-212ENST00000552491 FAT4Q6V0I7 4981 aa2.36□□□□□ -2.03
LIMA1-212ENST00000552491 TNP1P09430 55 aa2.35□□□□□ -2.03
LIMA1-212ENST00000552491 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
LIMA1-212ENST00000552491 SPRR5A0A1B0GTR4 108 aa2.31□□□□□ -2.04
LIMA1-212ENST00000552491 RNF213Q63HN8 5207 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms