RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 TNCP24821 2201 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 MED13LQ71F56 2210 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 MGAM2Q2M2H8 2515 aa0.78□□□□□ -2.28
LIMA1-209ENST00000552008 TENM1Q9UKZ4 2725 aa0.78□□□□□ -2.29
LIMA1-209ENST00000552008 NBEAL2Q6ZNJ1 2754 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 VWFP04275 2813 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 TRAV22A0A0B4J277 110 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 LOC101927531A0A1B0GV80 90 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 H7BZZ5 65 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 ACYP2P14621 99 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 Q96NJ1 140 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 MRPL34Q9BQ48 92 aaKnown RBP0.77□□□□□ -2.29
LIMA1-209ENST00000552008 LINC00846Q9NV44 126 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 NBEAL1Q6ZS30 2694 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 NBPF19A0A087WUL8 3843 aa0.77□□□□□ -2.29
LIMA1-209ENST00000552008 H0Y9P7 68 aa0.76□□□□□ -2.29
LIMA1-209ENST00000552008 UQCR11O14957 56 aa0.76□□□□□ -2.29
LIMA1-209ENST00000552008 ZFHX3Q15911 3703 aa0.76□□□□□ -2.29
LIMA1-209ENST00000552008 TENM3Q9P273 2699 aa0.76□□□□□ -2.29
LIMA1-209ENST00000552008 ANK2Q01484 3957 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 PKD1L1Q8TDX9 2849 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 A0A1B0GU69 56 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 K7EQZ3 153 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 COX6B2Q6YFQ2 88 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 DMAC1Q96GE9 116 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 LINC00472Q9H8W2 130 aa0.75□□□□□ -2.29
LIMA1-209ENST00000552008 MUC4Q99102 2169 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 ZNF469Q96JG9 3925 aaPredicted RBP0.74□□□□□ -2.29
LIMA1-209ENST00000552008 A0A087WVE0 104 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 LINC01554Q52M75 96 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 LINC01558Q9Y6Z2 57 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 CUBNO60494 3623 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 NOTCH1P46531 2555 aa0.74□□□□□ -2.29
LIMA1-209ENST00000552008 AHNAK2Q8IVF2 5795 aa0.73□□□□□ -2.29
LIMA1-209ENST00000552008 C9orf92A6NGG3 77 aa0.73□□□□□ -2.29
LIMA1-209ENST00000552008 M0R2T5 61 aa0.73□□□□□ -2.29
LIMA1-209ENST00000552008 SPINK7P58062 85 aa0.73□□□□□ -2.29
LIMA1-209ENST00000552008 RPL37P61927 97 aaKnown RBP0.73□□□□□ -2.29
LIMA1-209ENST00000552008 CSAG1Q6PB30 78 aa0.73□□□□□ -2.29
LIMA1-209ENST00000552008 TRRAPQ9Y4A5 3859 aa0.72□□□□□ -2.29
LIMA1-209ENST00000552008 MMP24-AS1A0A0U1RRL7 71 aa0.72□□□□□ -2.29
LIMA1-209ENST00000552008 MIR22HGQ0VDD5 57 aa0.72□□□□□ -2.29
LIMA1-209ENST00000552008 H1FX-AS1Q4G0G2 97 aa0.72□□□□□ -2.29
LIMA1-209ENST00000552008 TGP01266 2768 aa0.72□□□□□ -2.29
LIMA1-209ENST00000552008 ANK3Q12955 4377 aaKnown RBP0.71□□□□□ -2.3
LIMA1-209ENST00000552008 STAB2Q8WWQ8 2551 aa0.71□□□□□ -2.3
LIMA1-209ENST00000552008 Q5VV11 94 aa0.71□□□□□ -2.3
LIMA1-209ENST00000552008 TENM2Q9NT68 2774 aa0.71□□□□□ -2.3
LIMA1-209ENST00000552008 A6NN06 94 aa0.7□□□□□ -2.3
LIMA1-209ENST00000552008 KRTAP10-4P60372 401 aaPredicted RBP0.7□□□□□ -2.3
LIMA1-209ENST00000552008 CRIPTQ9P021 101 aa0.7□□□□□ -2.3
LIMA1-209ENST00000552008 S4R3F8 94 aa0.7□□□□□ -2.3
LIMA1-209ENST00000552008 COL7A1Q02388 2944 aa0.69□□□□□ -2.3
LIMA1-209ENST00000552008 M0QZ58 72 aa0.69□□□□□ -2.3
LIMA1-209ENST00000552008 ROMO1P60602 79 aa0.69□□□□□ -2.3
LIMA1-209ENST00000552008 SPATA8Q6RVD6 105 aa0.69□□□□□ -2.3
LIMA1-209ENST00000552008 MT1HL1P0DM35 61 aa0.68□□□□□ -2.3
LIMA1-209ENST00000552008 PLAC4Q8WY50 150 aa0.68□□□□□ -2.3
LIMA1-209ENST00000552008 DNAH3Q8TD57 4116 aa0.67□□□□□ -2.3
LIMA1-209ENST00000552008 SRRM2Q9UQ35 2752 aaKnown RBP0.67□□□□□ -2.3
LIMA1-209ENST00000552008 H0YAA0 97 aa0.66□□□□□ -2.3
LIMA1-209ENST00000552008 ALMS1Q8TCU4 4167 aa0.65□□□□□ -2.3
LIMA1-209ENST00000552008 DNHD1Q96M86 4753 aa0.65□□□□□ -2.31
LIMA1-209ENST00000552008 CSMD3Q7Z407 3707 aa0.65□□□□□ -2.31
LIMA1-209ENST00000552008 HUWE1Q7Z6Z7 4374 aaKnown RBP0.65□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH7Q8WXX0 4024 aa0.65□□□□□ -2.31
LIMA1-209ENST00000552008 PRKDCP78527 4128 aaKnown RBP0.64□□□□□ -2.31
LIMA1-209ENST00000552008 FLG2Q5D862 2391 aaPredicted RBP0.64□□□□□ -2.31
LIMA1-209ENST00000552008 HECTD4Q9Y4D8 3996 aa0.64□□□□□ -2.31
LIMA1-209ENST00000552008 CMYA5Q8N3K9 4069 aa0.64□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH9Q9NYC9 4486 aa0.64□□□□□ -2.31
LIMA1-209ENST00000552008 DYNC2H1Q8NCM8 4307 aaKnown RBP0.63□□□□□ -2.31
LIMA1-209ENST00000552008 A0A0D9SG42 100 aa0.63□□□□□ -2.31
LIMA1-209ENST00000552008 INE1O15225 51 aa0.63□□□□□ -2.31
LIMA1-209ENST00000552008 LYSTQ99698 3801 aa0.63□□□□□ -2.31
LIMA1-209ENST00000552008 TNP1P09430 55 aa0.62□□□□□ -2.31
LIMA1-209ENST00000552008 KRTAP5-10Q6L8G5 202 aa0.62□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH1Q9P2D7 4330 aa0.62□□□□□ -2.31
LIMA1-209ENST00000552008 KMT2AQ03164 3969 aa0.62□□□□□ -2.31
LIMA1-209ENST00000552008 STARD9Q9P2P6 4700 aa0.62□□□□□ -2.31
LIMA1-209ENST00000552008 DMBT1Q9UGM3 2413 aaPredicted RBP0.62□□□□□ -2.31
LIMA1-209ENST00000552008 PKD1P98161 4303 aa0.61□□□□□ -2.31
LIMA1-209ENST00000552008 VPS13DQ5THJ4 4388 aa0.61□□□□□ -2.31
LIMA1-209ENST00000552008 PLECQ15149 4684 aaKnown RBP0.61□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH6Q9C0G6 4158 aa0.6□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH5Q8TE73 4624 aa0.6□□□□□ -2.31
LIMA1-209ENST00000552008 GPR98Q8WXG9 6306 aa0.6□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH17Q9UFH2 4485 aa0.59□□□□□ -2.31
LIMA1-209ENST00000552008 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.31
LIMA1-209ENST00000552008 DNAH2Q9P225 4427 aa0.59□□□□□ -2.31
LIMA1-209ENST00000552008 MT1HP80294 61 aa0.59□□□□□ -2.31
LIMA1-209ENST00000552008 VPS13BQ7Z7G8 4022 aa0.59□□□□□ -2.32
LIMA1-209ENST00000552008 KMT2CQ8NEZ4 4911 aaKnown RBP0.59□□□□□ -2.32
LIMA1-209ENST00000552008 FAT2Q9NYQ8 4349 aa0.59□□□□□ -2.32
LIMA1-209ENST00000552008 FRAS1Q86XX4 4008 aa0.59□□□□□ -2.32
LIMA1-209ENST00000552008 RYR2Q92736 4967 aa0.58□□□□□ -2.32
LIMA1-209ENST00000552008 PKHD1P08F94 4074 aa0.58□□□□□ -2.32
LIMA1-209ENST00000552008 SPRR2GQ9BYE4 73 aa0.58□□□□□ -2.32
LIMA1-209ENST00000552008 DNAH10Q8IVF4 4471 aa0.58□□□□□ -2.32
LIMA1-209ENST00000552008 LRP1BQ9NZR2 4599 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms