RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 WNK1Q9H4A3 2382 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 FREM2Q5SZK8 3169 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 OTOGQ6ZRI0 2925 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 GVINP1Q7Z2Y8 2422 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 ACACBO00763 2458 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 CSPG4Q6UVK1 2322 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 NOP10Q9NPE3 64 aaKnown RBP0.81□□□□□ -2.28
LIMA1-207ENST00000551486 CHD7Q9P2D1 2997 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 MUC6Q6W4X9 2439 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 COL12A1Q99715 3063 aa0.81□□□□□ -2.28
LIMA1-207ENST00000551486 CEP250Q9BV73 2442 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 CEP290O15078 2479 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 TENM3Q9P273 2699 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 DEFB136Q30KP8 78 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 FRYLO94915 3013 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 DMXL1Q9Y485 3027 aa0.8□□□□□ -2.28
LIMA1-207ENST00000551486 DSTQ03001 7570 aaKnown RBP0.79□□□□□ -2.28
LIMA1-207ENST00000551486 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
LIMA1-207ENST00000551486 TGP01266 2768 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 DEFB110Q30KQ9 67 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 KRTAP13-1Q8IUC0 172 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 SPTA1P02549 2419 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 DMBT1Q9UGM3 2413 aaPredicted RBP0.79□□□□□ -2.28
LIMA1-207ENST00000551486 RNF213Q63HN8 5207 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 MTORP42345 2549 aa0.79□□□□□ -2.28
LIMA1-207ENST00000551486 CUBNO60494 3623 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 ACACAQ13085 2346 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 EP300Q09472 2414 aaPredicted RBP0.78□□□□□ -2.28
LIMA1-207ENST00000551486 ITPR2Q14571 2701 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 A0A096LNI7 61 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 MGAQ8IWI9 3026 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 CACNA1HO95180 2353 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 HIVEP3Q5T1R4 2406 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 TLN2Q9Y4G6 2542 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 SVEP1Q4LDE5 3571 aa0.78□□□□□ -2.28
LIMA1-207ENST00000551486 DMXL2Q8TDJ6 3036 aa0.78□□□□□ -2.29
LIMA1-207ENST00000551486 KRTAP21-3Q3LHN1 58 aa0.77□□□□□ -2.29
LIMA1-207ENST00000551486 SRRM2Q9UQ35 2752 aaKnown RBP0.76□□□□□ -2.29
LIMA1-207ENST00000551486 AKAP6Q13023 2319 aa0.76□□□□□ -2.29
LIMA1-207ENST00000551486 F8P00451 2351 aa0.76□□□□□ -2.29
LIMA1-207ENST00000551486 HMCN2Q8NDA2 5059 aa0.76□□□□□ -2.29
LIMA1-207ENST00000551486 STAB2Q8WWQ8 2551 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 H3BUX3 64 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 M0QZ58 72 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 SPINK6Q6UWN8 80 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 NBASA2RRP1 2371 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 LAMA5O15230 3695 aa0.75□□□□□ -2.29
LIMA1-207ENST00000551486 APCP25054 2843 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 VPS13CQ709C8 3753 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 ATMQ13315 3056 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 COL7A1Q02388 2944 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 A0A096LPF7 62 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 HIVEP1P15822 2718 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 CSMD3Q7Z407 3707 aa0.74□□□□□ -2.29
LIMA1-207ENST00000551486 RIF1Q5UIP0 2472 aaKnown RBP0.73□□□□□ -2.29
LIMA1-207ENST00000551486 KRTAP12-3P60328 96 aa0.73□□□□□ -2.29
LIMA1-207ENST00000551486 MYCBP2O75592 4640 aa0.73□□□□□ -2.29
LIMA1-207ENST00000551486 VPS13DQ5THJ4 4388 aa0.73□□□□□ -2.29
LIMA1-207ENST00000551486 DNAH11Q96DT5 4516 aa0.72□□□□□ -2.29
LIMA1-207ENST00000551486 CENPEQ02224 2701 aa0.72□□□□□ -2.29
LIMA1-207ENST00000551486 SONP18583 2426 aaKnown RBP0.72□□□□□ -2.29
LIMA1-207ENST00000551486 KMT2DO14686 5537 aa0.72□□□□□ -2.29
LIMA1-207ENST00000551486 KRTAP10-4P60372 401 aaPredicted RBP0.72□□□□□ -2.29
LIMA1-207ENST00000551486 APC2O95996 2303 aa0.72□□□□□ -2.29
LIMA1-207ENST00000551486 SPART-AS1P0CW21 52 aa0.71□□□□□ -2.3
LIMA1-207ENST00000551486 TRIOO75962 3097 aa0.71□□□□□ -2.3
LIMA1-207ENST00000551486 MDN1Q9NU22 5596 aa0.71□□□□□ -2.3
LIMA1-207ENST00000551486 MAP1AP78559 2803 aaPredicted RBP0.71□□□□□ -2.3
LIMA1-207ENST00000551486 MGAM2Q2M2H8 2515 aa0.71□□□□□ -2.3
LIMA1-207ENST00000551486 MUC5ACP98088 5654 aa0.7□□□□□ -2.3
LIMA1-207ENST00000551486 DCHS2Q6V1P9 2916 aa0.7□□□□□ -2.3
LIMA1-207ENST00000551486 ADGRG4Q8IZF6 3080 aa0.69□□□□□ -2.3
LIMA1-207ENST00000551486 ANK2Q01484 3957 aa0.69□□□□□ -2.3
LIMA1-207ENST00000551486 KMT2AQ03164 3969 aa0.68□□□□□ -2.3
LIMA1-207ENST00000551486 J3QKU1 62 aa0.68□□□□□ -2.3
LIMA1-207ENST00000551486 DEFB135Q30KP9 77 aa0.68□□□□□ -2.3
LIMA1-207ENST00000551486 LYSTQ99698 3801 aa0.68□□□□□ -2.3
LIMA1-207ENST00000551486 TNP1P09430 55 aa0.67□□□□□ -2.3
LIMA1-207ENST00000551486 CD52P31358 61 aa0.67□□□□□ -2.3
LIMA1-207ENST00000551486 CHD9Q3L8U1 2897 aa0.67□□□□□ -2.3
LIMA1-207ENST00000551486 MUC12Q9UKN1 5478 aa0.66□□□□□ -2.3
LIMA1-207ENST00000551486 KRTAP20-1Q3LI63 56 aa0.66□□□□□ -2.3
LIMA1-207ENST00000551486 DNAH8Q96JB1 4490 aa0.66□□□□□ -2.3
LIMA1-207ENST00000551486 USH2AO75445 5202 aa0.66□□□□□ -2.3
LIMA1-207ENST00000551486 LAMA1P25391 3075 aa0.66□□□□□ -2.3
LIMA1-207ENST00000551486 AKAP9Q99996 3911 aa0.65□□□□□ -2.3
LIMA1-207ENST00000551486 KRTAP2-3P0C7H8 128 aa0.65□□□□□ -2.31
LIMA1-207ENST00000551486 KRTAP2-4Q9BYR9 128 aa0.65□□□□□ -2.31
LIMA1-207ENST00000551486 KRTAP2-1Q9BYU5 128 aa0.65□□□□□ -2.31
LIMA1-207ENST00000551486 PRKDCP78527 4128 aaKnown RBP0.65□□□□□ -2.31
LIMA1-207ENST00000551486 TACC2O95359 2948 aa0.65□□□□□ -2.31
LIMA1-207ENST00000551486 FAM186AA6NE01 2351 aa0.64□□□□□ -2.31
LIMA1-207ENST00000551486 H3BNG1 76 aa0.64□□□□□ -2.31
LIMA1-207ENST00000551486 M0R2T5 61 aa0.64□□□□□ -2.31
LIMA1-207ENST00000551486 DEFB124Q8NES8 71 aa0.64□□□□□ -2.31
LIMA1-207ENST00000551486 FAT2Q9NYQ8 4349 aa0.64□□□□□ -2.31
LIMA1-207ENST00000551486 SACSQ9NZJ4 4579 aa0.63□□□□□ -2.31
LIMA1-207ENST00000551486 C9orf92A6NGG3 77 aa0.63□□□□□ -2.31
LIMA1-207ENST00000551486 LINC01556Q5JQF7 62 aa0.63□□□□□ -2.31
LIMA1-207ENST00000551486 SMR3AQ99954 134 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms