RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 KRTAP13-4Q3LI77 160 aa11.91□□□□□ -0.5
NPAS3-206ENST00000548645 A0A0D9SG42 100 aa11.9□□□□□ -0.5
NPAS3-206ENST00000548645 APOBP04114 4563 aaKnown RBP11.9□□□□□ -0.5
NPAS3-206ENST00000548645 P0C880 135 aa11.89□□□□□ -0.51
NPAS3-206ENST00000548645 FAT1Q14517 4588 aa11.89□□□□□ -0.51
NPAS3-206ENST00000548645 A0A1B0GVY2 172 aa11.87□□□□□ -0.51
NPAS3-206ENST00000548645 KRTAP3-2Q9BYR7 98 aa11.86□□□□□ -0.51
NPAS3-206ENST00000548645 TPRXLQ17RH7 258 aa11.82□□□□□ -0.52
NPAS3-206ENST00000548645 S4R3F8 94 aa11.8□□□□□ -0.52
NPAS3-206ENST00000548645 DMBT1Q9UGM3 2413 aaPredicted RBP11.8□□□□□ -0.52
NPAS3-206ENST00000548645 SPINT4Q6UDR6 99 aa11.77□□□□□ -0.52
NPAS3-206ENST00000548645 KRTAP10-8P60410 259 aa11.66□□□□□ -0.54
NPAS3-206ENST00000548645 C10orf95Q9H7T3 257 aa11.66□□□□□ -0.54
NPAS3-206ENST00000548645 FAT3Q8TDW7 4589 aa11.63□□□□□ -0.55
NPAS3-206ENST00000548645 KRTAP12-2P59991 146 aa11.59□□□□□ -0.55
NPAS3-206ENST00000548645 XP32Q5T750 250 aa11.59□□□□□ -0.55
NPAS3-206ENST00000548645 KIAA1109Q2LD37 5005 aa11.57□□□□□ -0.56
NPAS3-206ENST00000548645 EPPK1P58107 5090 aaKnown RBP11.57□□□□□ -0.56
NPAS3-206ENST00000548645 LRP1Q07954 4544 aaKnown RBP11.52□□□□□ -0.57
NPAS3-206ENST00000548645 KRTAP15-1Q3LI76 137 aa11.51□□□□□ -0.57
NPAS3-206ENST00000548645 HSPG2P98160 4391 aa11.5□□□□□ -0.57
NPAS3-206ENST00000548645 KRTAP12-1P59990 96 aa11.49□□□□□ -0.57
NPAS3-206ENST00000548645 RYR1P21817 5038 aa11.46□□□□□ -0.57
NPAS3-206ENST00000548645 TNXBP22105 4242 aa11.45□□□□□ -0.58
NPAS3-206ENST00000548645 KRTAP17-1Q9BYP8 105 aa11.43□□□□□ -0.58
NPAS3-206ENST00000548645 NDUFAF8A1L188 74 aa11.39□□□□□ -0.59
NPAS3-206ENST00000548645 M0QZ58 72 aa11.38□□□□□ -0.59
NPAS3-206ENST00000548645 Q5VSD8 79 aa11.35□□□□□ -0.59
NPAS3-206ENST00000548645 MYCBP2O75592 4640 aa11.3□□□□□ -0.6
NPAS3-206ENST00000548645 KRTAP4-5Q9BYR2 181 aa11.08□□□□□ -0.64
NPAS3-206ENST00000548645 MT1HL1P0DM35 61 aa11.02□□□□□ -0.65
NPAS3-206ENST00000548645 R4GN34 69 aa10.99□□□□□ -0.65
NPAS3-206ENST00000548645 LPAP08519 4548 aa10.98□□□□□ -0.65
NPAS3-206ENST00000548645 ABCA13Q86UQ4 5058 aa10.96□□□□□ -0.66
NPAS3-206ENST00000548645 LRP2P98164 4655 aa10.88□□□□□ -0.67
NPAS3-206ENST00000548645 HERC2O95714 4834 aa10.86□□□□□ -0.67
NPAS3-206ENST00000548645 BIRC6Q9NR09 4857 aa10.86□□□□□ -0.67
NPAS3-206ENST00000548645 PLAC4Q8WY50 150 aa10.84□□□□□ -0.67
NPAS3-206ENST00000548645 LORP23490 312 aaPredicted RBP10.69□□□□□ -0.7
NPAS3-206ENST00000548645 PP632Q6XCG6 107 aa10.61□□□□□ -0.71
NPAS3-206ENST00000548645 PCLOQ9Y6V0 5065 aa10.59□□□□□ -0.71
NPAS3-206ENST00000548645 SEC61BP60468 96 aaKnown RBP10.57□□□□□ -0.72
NPAS3-206ENST00000548645 J3QL48 77 aa10.56□□□□□ -0.72
NPAS3-206ENST00000548645 A0A0A0MQY5 61 aa10.54□□□□□ -0.72
NPAS3-206ENST00000548645 CAMK2N1Q7Z7J9 78 aa10.5□□□□□ -0.73
NPAS3-206ENST00000548645 LUZP6Q538Z0 58 aa10.48□□□□□ -0.73
NPAS3-206ENST00000548645 HERC1Q15751 4861 aa10.47□□□□□ -0.73
NPAS3-206ENST00000548645 MUC17Q685J3 4493 aa10.43□□□□□ -0.74
NPAS3-206ENST00000548645 KRTAP4-1Q9BYQ7 146 aa10.37□□□□□ -0.75
NPAS3-206ENST00000548645 KRTAP19-2Q3LHN2 52 aa10.26□□□□□ -0.77
NPAS3-206ENST00000548645 MUC2Q02817 5179 aa10.19□□□□□ -0.78
NPAS3-206ENST00000548645 TNP1P09430 55 aa10.17□□□□□ -0.78
NPAS3-206ENST00000548645 KRTAP23-1A1A580 65 aa10.14□□□□□ -0.79
NPAS3-206ENST00000548645 HMCN2Q8NDA2 5059 aa10.12□□□□□ -0.79
NPAS3-206ENST00000548645 SPRR5A0A1B0GTR4 108 aa10□□□□□ -0.81
NPAS3-206ENST00000548645 FLGP20930 4061 aaPredicted RBP9.92□□□□□ -0.82
NPAS3-206ENST00000548645 UBR4Q5T4S7 5183 aa9.91□□□□□ -0.82
NPAS3-206ENST00000548645 RNF213Q63HN8 5207 aa9.89□□□□□ -0.83
NPAS3-206ENST00000548645 FAT4Q6V0I7 4981 aa9.72□□□□□ -0.85
NPAS3-206ENST00000548645 SPRR2GQ9BYE4 73 aa9.64□□□□□ -0.87
NPAS3-206ENST00000548645 KRTAP19-1Q8IUB9 90 aa9.53□□□□□ -0.88
NPAS3-206ENST00000548645 LCE3AQ5TA76 89 aa9.52□□□□□ -0.89
NPAS3-206ENST00000548645 LCE2CQ5TA81 110 aa9.45□□□□□ -0.9
NPAS3-206ENST00000548645 M0R2T5 61 aa9.32□□□□□ -0.92
NPAS3-206ENST00000548645 KRTAP8-1Q8IUC2 63 aa9.31□□□□□ -0.92
NPAS3-206ENST00000548645 PRO2289Q9P1D8 64 aa9.3□□□□□ -0.92
NPAS3-206ENST00000548645 INE1O15225 51 aa9.21□□□□□ -0.94
NPAS3-206ENST00000548645 KRTAP10-10P60014 251 aa9.21□□□□□ -0.94
NPAS3-206ENST00000548645 MT1HP80294 61 aa9.18□□□□□ -0.94
NPAS3-206ENST00000548645 MT1FP04733 61 aa9.17□□□□□ -0.94
NPAS3-206ENST00000548645 MT2AP02795 61 aa9.16□□□□□ -0.94
NPAS3-206ENST00000548645 KRTAP19-8Q3LI54 63 aa9.13□□□□□ -0.95
NPAS3-206ENST00000548645 KRTAP12-3P60328 96 aa9.07□□□□□ -0.96
NPAS3-206ENST00000548645 KRTAP10-5P60370 271 aa9.04□□□□□ -0.96
NPAS3-206ENST00000548645 KRTAP9-8Q9BYQ0 159 aa9.04□□□□□ -0.96
NPAS3-206ENST00000548645 MT1XP80297 61 aa9.02□□□□□ -0.97
NPAS3-206ENST00000548645 KRTAP10-12P60413 245 aa9.01□□□□□ -0.97
NPAS3-206ENST00000548645 MT1BP07438 61 aa8.98□□□□□ -0.97
NPAS3-206ENST00000548645 KRTAP10-7P60409 375 aaPredicted RBP8.8□□□□□ -1
NPAS3-206ENST00000548645 LCE2AQ5TA79 106 aaPredicted RBP8.66□□□□□ -1.02
NPAS3-206ENST00000548645 KRTAP9-3Q9BYQ3 159 aa8.63□□□□□ -1.03
NPAS3-206ENST00000548645 LCE3CQ5T5A8 94 aa8.56□□□□□ -1.04
NPAS3-206ENST00000548645 USH2AO75445 5202 aa8.53□□□□□ -1.04
NPAS3-206ENST00000548645 KRTAP19-5Q3LI72 72 aa8.52□□□□□ -1.05
NPAS3-206ENST00000548645 LCE2BO14633 110 aa8.35□□□□□ -1.07
NPAS3-206ENST00000548645 FSIP2Q5CZC0 6907 aa8.33□□□□□ -1.08
NPAS3-206ENST00000548645 KRTAP9-6A8MVA2 160 aa8.25□□□□□ -1.09
NPAS3-206ENST00000548645 KRTAP2-3P0C7H8 128 aa8.16□□□□□ -1.1
NPAS3-206ENST00000548645 KRTAP2-4Q9BYR9 128 aa8.16□□□□□ -1.1
NPAS3-206ENST00000548645 KRTAP2-1Q9BYU5 128 aa8.16□□□□□ -1.1
NPAS3-206ENST00000548645 KRTAP4-8A0A0G2JLE6 195 aa8.14□□□□□ -1.11
NPAS3-206ENST00000548645 KRTAP4-8Q9BYQ9 185 aa8.14□□□□□ -1.11
NPAS3-206ENST00000548645 KMT2DO14686 5537 aa8.07□□□□□ -1.12
NPAS3-206ENST00000548645 SSPOA2VEC9 5147 aa8.04□□□□□ -1.12
NPAS3-206ENST00000548645 KRTAP19-7Q3SYF9 63 aa8.03□□□□□ -1.12
NPAS3-206ENST00000548645 KRTAP19-4Q3LI73 84 aa8.02□□□□□ -1.12
NPAS3-206ENST00000548645 KRTAP4-7Q9BYR0 210 aa7.98□□□□□ -1.13
NPAS3-206ENST00000548645 MT1LQ93083 61 aa7.85□□□□□ -1.15
NPAS3-206ENST00000548645 MT1EP04732 61 aa7.77□□□□□ -1.17
NPAS3-206ENST00000548645 LCE2DQ5TA82 110 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms