RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LRBAP50851 2863 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 MKI67P46013 3256 aaKnown RBP0.1□□□□□ -2.39
VPS29-205ENST00000548539 TRIOO75962 3097 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 EPG5Q9HCE0 2579 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 FLGP20930 4061 aaPredicted RBP0.09□□□□□ -2.39
VPS29-205ENST00000548539 HIVEP1P15822 2718 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 ACACBO00763 2458 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 PLECQ15149 4684 aaKnown RBP0.09□□□□□ -2.39
VPS29-205ENST00000548539 DOPEY1Q5JWR5 2465 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 PRUNE2Q8WUY3 3088 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 AKAP9Q99996 3911 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 MTORP42345 2549 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 MXRA5Q9NR99 2828 aa0.09□□□□□ -2.39
VPS29-205ENST00000548539 M0QY20 66 aa0.09□□□□□ -2.4
VPS29-205ENST00000548539 KRTAP6-2Q3LI66 62 aa0.09□□□□□ -2.4
VPS29-205ENST00000548539 USP9YO00507 2555 aaPredicted RBP0.09□□□□□ -2.4
VPS29-205ENST00000548539 USP9XQ93008 2570 aaPredicted RBP0.09□□□□□ -2.4
VPS29-205ENST00000548539 LAMA1P25391 3075 aa0.09□□□□□ -2.4
VPS29-205ENST00000548539 CACNA1AO00555 2505 aa0.09□□□□□ -2.4
VPS29-205ENST00000548539 DNAH10Q8IVF4 4471 aa0.09□□□□□ -2.4
VPS29-205ENST00000548539 WDR87Q6ZQQ6 2873 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 CEP250Q9BV73 2442 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 UTP20O75691 2785 aaKnown RBP0.08□□□□□ -2.4
VPS29-205ENST00000548539 FLNBO75369 2602 aaKnown RBP0.08□□□□□ -2.4
VPS29-205ENST00000548539 DNAH1Q9P2D7 4330 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 DNAH6Q9C0G6 4158 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 CSMD1Q96PZ7 3565 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 MAP1AP78559 2803 aaPredicted RBP0.08□□□□□ -2.4
VPS29-205ENST00000548539 HERC1Q15751 4861 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 ITPR3Q14573 2671 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 M0R2T5 61 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 SMR3BP02814 79 aaPredicted RBP0.08□□□□□ -2.4
VPS29-205ENST00000548539 DEFB1P60022 68 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 DEFB135Q30KP9 77 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 SPRR2GQ9BYE4 73 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 TOMM7Q9P0U1 55 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 LPAP08519 4548 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 SZT2Q5T011 3432 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 TGP01266 2768 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 FRYLO94915 3013 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 TLN2Q9Y4G6 2542 aa0.08□□□□□ -2.4
VPS29-205ENST00000548539 HTTP42858 3142 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 LAMA5O15230 3695 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 IGSF10Q6WRI0 2623 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 PTPN13Q12923 2485 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 LRP2P98164 4655 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 H3BNG1 76 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 H3BUA1 57 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 DEFB131AP59861 70 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 KRTAP19-5Q3LI72 72 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 DYNC1H1Q14204 4646 aaKnown RBP0.07□□□□□ -2.4
VPS29-205ENST00000548539 DNAH5Q8TE73 4624 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 STARD9Q9P2P6 4700 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 CSMD2Q7Z408 3487 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 CFAP46Q8IYW2 2715 aa0.07□□□□□ -2.4
VPS29-205ENST00000548539 SSPOA2VEC9 5147 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 FLNAP21333 2647 aaKnown RBP0.06□□□□□ -2.4
VPS29-205ENST00000548539 DNAH17Q9UFH2 4485 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 PKHD1P08F94 4074 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 SMG1Q96Q15 3661 aaKnown RBP0.06□□□□□ -2.4
VPS29-205ENST00000548539 LAMA3Q16787 3333 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 SPRR2DP22532 72 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 KRTAP8-1Q8IUC2 63 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 BOD1L1Q8NFC6 3051 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 CFAP47Q6ZTR5 3102 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 MUC17Q685J3 4493 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 EYSQ5T1H1 3165 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 DMDP11532 3685 aa0.06□□□□□ -2.4
VPS29-205ENST00000548539 DCHS1Q96JQ0 3298 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 SPTAN1Q13813 2472 aaKnown RBP0.05□□□□□ -2.4
VPS29-205ENST00000548539 TEX15Q9BXT5 2789 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 A0A096LNI7 61 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 DEFB108AA8MXU0 73 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 H0YGG7 62 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 M0QZ58 72 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 MT1AP04731 61 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 APELAP0DMC3 54 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 PRCDQ00LT1 54 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 DEFB136Q30KP8 78 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 DEFB110Q30KQ9 67 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 RPL39P5Q59GN2 51 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 LAMA2P24043 3122 aaKnown RBP0.05□□□□□ -2.4
VPS29-205ENST00000548539 CEP350Q5VT06 3117 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 FREM2Q5SZK8 3169 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 TRRAPQ9Y4A5 3859 aa0.05□□□□□ -2.4
VPS29-205ENST00000548539 ITPR2Q14571 2701 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 CMYA5Q8N3K9 4069 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 MGAM2Q2M2H8 2515 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 C9orf92A6NGG3 77 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 K7EIM0 57 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 TNP1P09430 55 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 SPRR2BP35325 72 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 NOP10Q9NPE3 64 aaKnown RBP0.04□□□□□ -2.4
VPS29-205ENST00000548539 USH2AO75445 5202 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 MUC3AQ02505 3323 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 VPS13CQ709C8 3753 aa0.04□□□□□ -2.4
VPS29-205ENST00000548539 NBEAL1Q6ZS30 2694 aa0.03□□□□□ -2.4
VPS29-205ENST00000548539 WDFY4Q6ZS81 3184 aa0.03□□□□□ -2.4
VPS29-205ENST00000548539 PCLOQ9Y6V0 5065 aa0.03□□□□□ -2.4
VPS29-205ENST00000548539 SPART-AS1P0CW21 52 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms