RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KRTAP12-2P59991 146 aa7.7□□□□□ -1.18
CUX1-211ENST00000546411 MT1HL1P0DM35 61 aa7.69□□□□□ -1.18
CUX1-211ENST00000546411 KRTAP10-6P60371 365 aaPredicted RBP7.67□□□□□ -1.18
CUX1-211ENST00000546411 DNAH17Q9UFH2 4485 aa7.64□□□□□ -1.19
CUX1-211ENST00000546411 DNAH2Q9P225 4427 aa7.61□□□□□ -1.19
CUX1-211ENST00000546411 KRTAP4-5Q9BYR2 181 aa7.61□□□□□ -1.19
CUX1-211ENST00000546411 DNAH7Q8WXX0 4024 aa7.61□□□□□ -1.19
CUX1-211ENST00000546411 CMYA5Q8N3K9 4069 aa7.58□□□□□ -1.2
CUX1-211ENST00000546411 KRTAP12-1P59990 96 aa7.57□□□□□ -1.2
CUX1-211ENST00000546411 TNP1P09430 55 aa7.57□□□□□ -1.2
CUX1-211ENST00000546411 KRTAP3-3Q9BYR6 98 aa7.57□□□□□ -1.2
CUX1-211ENST00000546411 DYNC1H1Q14204 4646 aaKnown RBP7.57□□□□□ -1.2
CUX1-211ENST00000546411 FRAS1Q86XX4 4008 aa7.56□□□□□ -1.2
CUX1-211ENST00000546411 DNAH3Q8TD57 4116 aa7.55□□□□□ -1.2
CUX1-211ENST00000546411 MYCBP2O75592 4640 aa7.53□□□□□ -1.2
CUX1-211ENST00000546411 DNAH6Q9C0G6 4158 aa7.5□□□□□ -1.21
CUX1-211ENST00000546411 KRTAP3-2Q9BYR7 98 aa7.49□□□□□ -1.21
CUX1-211ENST00000546411 VPS13BQ7Z7G8 4022 aa7.47□□□□□ -1.21
CUX1-211ENST00000546411 KRTAP10-10P60014 251 aa7.46□□□□□ -1.22
CUX1-211ENST00000546411 ALMS1Q8TCU4 4167 aa7.42□□□□□ -1.22
CUX1-211ENST00000546411 KIAA1109Q2LD37 5005 aa7.41□□□□□ -1.22
CUX1-211ENST00000546411 RYR1P21817 5038 aa7.4□□□□□ -1.22
CUX1-211ENST00000546411 DYNC2H1Q8NCM8 4307 aaKnown RBP7.39□□□□□ -1.23
CUX1-211ENST00000546411 HECTD4Q9Y4D8 3996 aa7.35□□□□□ -1.23
CUX1-211ENST00000546411 SACSQ9NZJ4 4579 aa7.34□□□□□ -1.24
CUX1-211ENST00000546411 LRP1Q07954 4544 aaKnown RBP7.33□□□□□ -1.24
CUX1-211ENST00000546411 FAT3Q8TDW7 4589 aa7.33□□□□□ -1.24
CUX1-211ENST00000546411 PP632Q6XCG6 107 aa7.32□□□□□ -1.24
CUX1-211ENST00000546411 HYDINQ4G0P3 5121 aa7.3□□□□□ -1.24
CUX1-211ENST00000546411 PKHD1P08F94 4074 aa7.27□□□□□ -1.25
CUX1-211ENST00000546411 APOBP04114 4563 aaKnown RBP7.24□□□□□ -1.25
CUX1-211ENST00000546411 FAT2Q9NYQ8 4349 aa7.24□□□□□ -1.25
CUX1-211ENST00000546411 RYR3Q15413 4870 aa7.21□□□□□ -1.25
CUX1-211ENST00000546411 KRTAP15-1Q3LI76 137 aa7.21□□□□□ -1.26
CUX1-211ENST00000546411 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
CUX1-211ENST00000546411 KRTAP17-1Q9BYP8 105 aa7.14□□□□□ -1.27
CUX1-211ENST00000546411 KRTAP4-1Q9BYQ7 146 aa7.06□□□□□ -1.28
CUX1-211ENST00000546411 KMT2CQ8NEZ4 4911 aaKnown RBP7.02□□□□□ -1.29
CUX1-211ENST00000546411 LRP2P98164 4655 aa6.98□□□□□ -1.29
CUX1-211ENST00000546411 RYR2Q92736 4967 aa6.95□□□□□ -1.3
CUX1-211ENST00000546411 PRO2289Q9P1D8 64 aa6.91□□□□□ -1.3
CUX1-211ENST00000546411 PKD1P98161 4303 aa6.87□□□□□ -1.31
CUX1-211ENST00000546411 HERC2O95714 4834 aa6.78□□□□□ -1.32
CUX1-211ENST00000546411 HSPG2P98160 4391 aa6.77□□□□□ -1.33
CUX1-211ENST00000546411 LPAP08519 4548 aa6.7□□□□□ -1.34
CUX1-211ENST00000546411 LCE3AQ5TA76 89 aa6.59□□□□□ -1.35
CUX1-211ENST00000546411 EPPK1P58107 5090 aaKnown RBP6.57□□□□□ -1.36
CUX1-211ENST00000546411 KRTAP10-12P60413 245 aa6.57□□□□□ -1.36
CUX1-211ENST00000546411 MT1HP80294 61 aa6.53□□□□□ -1.36
CUX1-211ENST00000546411 PKHD1L1Q86WI1 4243 aa6.49□□□□□ -1.37
CUX1-211ENST00000546411 MT2AP02795 61 aa6.47□□□□□ -1.37
CUX1-211ENST00000546411 KRTAP12-3P60328 96 aa6.46□□□□□ -1.38
CUX1-211ENST00000546411 MT1FP04733 61 aa6.44□□□□□ -1.38
CUX1-211ENST00000546411 TNXBP22105 4242 aa6.43□□□□□ -1.38
CUX1-211ENST00000546411 ABCA13Q86UQ4 5058 aa6.42□□□□□ -1.38
CUX1-211ENST00000546411 SPRR2GQ9BYE4 73 aa6.39□□□□□ -1.39
CUX1-211ENST00000546411 MUC2Q02817 5179 aa6.34□□□□□ -1.39
CUX1-211ENST00000546411 KRTAP23-1A1A580 65 aa6.32□□□□□ -1.4
CUX1-211ENST00000546411 PCLOQ9Y6V0 5065 aa6.32□□□□□ -1.4
CUX1-211ENST00000546411 KRTAP19-1Q8IUB9 90 aa6.3□□□□□ -1.4
CUX1-211ENST00000546411 BIRC6Q9NR09 4857 aa6.29□□□□□ -1.4
CUX1-211ENST00000546411 HERC1Q15751 4861 aa6.22□□□□□ -1.41
CUX1-211ENST00000546411 CRCT1Q9UGL9 99 aa6.21□□□□□ -1.42
CUX1-211ENST00000546411 RNF213Q63HN8 5207 aa6.21□□□□□ -1.42
CUX1-211ENST00000546411 INE1O15225 51 aa6.2□□□□□ -1.42
CUX1-211ENST00000546411 LCE2CQ5TA81 110 aa6.19□□□□□ -1.42
CUX1-211ENST00000546411 KRTAP19-2Q3LHN2 52 aa6.15□□□□□ -1.42
CUX1-211ENST00000546411 FAT4Q6V0I7 4981 aa6.14□□□□□ -1.43
CUX1-211ENST00000546411 MUC17Q685J3 4493 aa6.1□□□□□ -1.43
CUX1-211ENST00000546411 KRTAP9-8Q9BYQ0 159 aa6.07□□□□□ -1.44
CUX1-211ENST00000546411 KRTAP10-7P60409 375 aaPredicted RBP6.04□□□□□ -1.44
CUX1-211ENST00000546411 UBR4Q5T4S7 5183 aa6.02□□□□□ -1.45
CUX1-211ENST00000546411 FSIP2Q5CZC0 6907 aa6.01□□□□□ -1.45
CUX1-211ENST00000546411 FLGP20930 4061 aaPredicted RBP6.01□□□□□ -1.45
CUX1-211ENST00000546411 KRTAP8-1Q8IUC2 63 aa6.01□□□□□ -1.45
CUX1-211ENST00000546411 MT1BP07438 61 aa5.99□□□□□ -1.45
CUX1-211ENST00000546411 KRTAP19-8Q3LI54 63 aa5.99□□□□□ -1.45
CUX1-211ENST00000546411 KRTAP19-5Q3LI72 72 aa5.98□□□□□ -1.45
CUX1-211ENST00000546411 MT1XP80297 61 aa5.98□□□□□ -1.45
CUX1-211ENST00000546411 KRTAP10-5P60370 271 aa5.94□□□□□ -1.46
CUX1-211ENST00000546411 KRTAP9-3Q9BYQ3 159 aa5.84□□□□□ -1.47
CUX1-211ENST00000546411 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
CUX1-211ENST00000546411 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
CUX1-211ENST00000546411 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
CUX1-211ENST00000546411 LCE3CQ5T5A8 94 aa5.77□□□□□ -1.49
CUX1-211ENST00000546411 SPRR5A0A1B0GTR4 108 aa5.73□□□□□ -1.49
CUX1-211ENST00000546411 LCE2BO14633 110 aa5.7□□□□□ -1.5
CUX1-211ENST00000546411 SPRR2FQ96RM1 72 aa5.62□□□□□ -1.51
CUX1-211ENST00000546411 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
CUX1-211ENST00000546411 USH2AO75445 5202 aa5.5□□□□□ -1.53
CUX1-211ENST00000546411 OBSCNQ5VST9 7968 aa5.49□□□□□ -1.53
CUX1-211ENST00000546411 SYNE1Q8NF91 8797 aaKnown RBP5.47□□□□□ -1.53
CUX1-211ENST00000546411 MT1GP13640 62 aa5.4□□□□□ -1.54
CUX1-211ENST00000546411 KMT2DO14686 5537 aa5.34□□□□□ -1.55
CUX1-211ENST00000546411 LCE2AQ5TA79 106 aaPredicted RBP5.32□□□□□ -1.56
CUX1-211ENST00000546411 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
CUX1-211ENST00000546411 MT1LQ93083 61 aa5.28□□□□□ -1.56
CUX1-211ENST00000546411 MT1EP04732 61 aa5.26□□□□□ -1.57
CUX1-211ENST00000546411 LCE3BQ5TA77 95 aa5.24□□□□□ -1.57
CUX1-211ENST00000546411 FCGBPQ9Y6R7 5405 aaPredicted RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms