RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 LRP1Q07954 4544 aaKnown RBP7.81□□□□□ -1.16
HOXC11-202ENST00000546378 A8MUU9 505 aa7.8□□□□□ -1.16
HOXC11-202ENST00000546378 KRTAP10-4P60372 401 aaPredicted RBP7.8□□□□□ -1.16
HOXC11-202ENST00000546378 KRTAP25-1Q3LHN0 102 aa7.8□□□□□ -1.16
HOXC11-202ENST00000546378 FAT3Q8TDW7 4589 aa7.8□□□□□ -1.16
HOXC11-202ENST00000546378 EPPK1P58107 5090 aaKnown RBP7.77□□□□□ -1.17
HOXC11-202ENST00000546378 KRTAP17-1Q9BYP8 105 aa7.76□□□□□ -1.17
HOXC11-202ENST00000546378 HSPG2P98160 4391 aa7.7□□□□□ -1.18
HOXC11-202ENST00000546378 ROMO1P60602 79 aa7.7□□□□□ -1.18
HOXC11-202ENST00000546378 RYR1P21817 5038 aa7.68□□□□□ -1.18
HOXC11-202ENST00000546378 KRTAP13-4Q3LI77 160 aa7.65□□□□□ -1.18
HOXC11-202ENST00000546378 P0C880 135 aa7.65□□□□□ -1.19
HOXC11-202ENST00000546378 KRTAP4-5Q9BYR2 181 aa7.64□□□□□ -1.19
HOXC11-202ENST00000546378 KRTAP10-8P60410 259 aa7.63□□□□□ -1.19
HOXC11-202ENST00000546378 RPL37P61927 97 aaKnown RBP7.61□□□□□ -1.19
HOXC11-202ENST00000546378 C20orf166-AS1Q96NR2 134 aa7.61□□□□□ -1.19
HOXC11-202ENST00000546378 S4R3F8 94 aa7.56□□□□□ -1.2
HOXC11-202ENST00000546378 NDUFAF8A1L188 74 aa7.54□□□□□ -1.2
HOXC11-202ENST00000546378 TPRXLQ17RH7 258 aa7.53□□□□□ -1.2
HOXC11-202ENST00000546378 PKHD1L1Q86WI1 4243 aa7.51□□□□□ -1.21
HOXC11-202ENST00000546378 RPS29P62273 56 aaKnown RBP7.51□□□□□ -1.21
HOXC11-202ENST00000546378 LPAP08519 4548 aa7.5□□□□□ -1.21
HOXC11-202ENST00000546378 J3QL48 77 aa7.48□□□□□ -1.21
HOXC11-202ENST00000546378 MT1HL1P0DM35 61 aa7.46□□□□□ -1.21
HOXC11-202ENST00000546378 KRTAP10-6P60371 365 aaPredicted RBP7.46□□□□□ -1.22
HOXC11-202ENST00000546378 KRTAP12-2P59991 146 aa7.46□□□□□ -1.22
HOXC11-202ENST00000546378 LRP2P98164 4655 aa7.43□□□□□ -1.22
HOXC11-202ENST00000546378 KRTAP3-3Q9BYR6 98 aa7.41□□□□□ -1.22
HOXC11-202ENST00000546378 XP32Q5T750 250 aa7.4□□□□□ -1.23
HOXC11-202ENST00000546378 TNXBP22105 4242 aa7.39□□□□□ -1.23
HOXC11-202ENST00000546378 HERC2O95714 4834 aa7.36□□□□□ -1.23
HOXC11-202ENST00000546378 ABCA13Q86UQ4 5058 aa7.36□□□□□ -1.23
HOXC11-202ENST00000546378 KRTAP3-2Q9BYR7 98 aa7.33□□□□□ -1.24
HOXC11-202ENST00000546378 M0QZ58 72 aa7.33□□□□□ -1.24
HOXC11-202ENST00000546378 R4GN34 69 aa7.26□□□□□ -1.25
HOXC11-202ENST00000546378 BIRC6Q9NR09 4857 aa7.26□□□□□ -1.25
HOXC11-202ENST00000546378 MUC2Q02817 5179 aa7.23□□□□□ -1.25
HOXC11-202ENST00000546378 KRTAP12-1P59990 96 aa7.21□□□□□ -1.25
HOXC11-202ENST00000546378 PCLOQ9Y6V0 5065 aa7.1□□□□□ -1.27
HOXC11-202ENST00000546378 HERC1Q15751 4861 aa7.1□□□□□ -1.27
HOXC11-202ENST00000546378 CAMK2N1Q7Z7J9 78 aa7.09□□□□□ -1.28
HOXC11-202ENST00000546378 LORP23490 312 aaPredicted RBP7.07□□□□□ -1.28
HOXC11-202ENST00000546378 LCE2DQ5TA82 110 aaPredicted RBP7.04□□□□□ -1.28
HOXC11-202ENST00000546378 A0A0A0MQY5 61 aa7.03□□□□□ -1.28
HOXC11-202ENST00000546378 KRTAP15-1Q3LI76 137 aa7.02□□□□□ -1.29
HOXC11-202ENST00000546378 SEC61BP60468 96 aaKnown RBP6.98□□□□□ -1.29
HOXC11-202ENST00000546378 PLAC4Q8WY50 150 aa6.9□□□□□ -1.3
HOXC11-202ENST00000546378 KRTAP4-1Q9BYQ7 146 aa6.88□□□□□ -1.31
HOXC11-202ENST00000546378 LUZP6Q538Z0 58 aa6.82□□□□□ -1.32
HOXC11-202ENST00000546378 FAT4Q6V0I7 4981 aa6.81□□□□□ -1.32
HOXC11-202ENST00000546378 RNF213Q63HN8 5207 aa6.78□□□□□ -1.32
HOXC11-202ENST00000546378 HMCN2Q8NDA2 5059 aa6.75□□□□□ -1.33
HOXC11-202ENST00000546378 UBR4Q5T4S7 5183 aa6.72□□□□□ -1.33
HOXC11-202ENST00000546378 M0R2T5 61 aa6.66□□□□□ -1.34
HOXC11-202ENST00000546378 MUC17Q685J3 4493 aa6.61□□□□□ -1.35
HOXC11-202ENST00000546378 TNP1P09430 55 aa6.49□□□□□ -1.37
HOXC11-202ENST00000546378 KRTAP19-2Q3LHN2 52 aa6.47□□□□□ -1.37
HOXC11-202ENST00000546378 FLGP20930 4061 aaPredicted RBP6.37□□□□□ -1.39
HOXC11-202ENST00000546378 LCE2CQ5TA81 110 aa6.36□□□□□ -1.39
HOXC11-202ENST00000546378 PP632Q6XCG6 107 aa6.31□□□□□ -1.4
HOXC11-202ENST00000546378 MT1HP80294 61 aa6.3□□□□□ -1.4
HOXC11-202ENST00000546378 KRTAP10-10P60014 251 aa6.26□□□□□ -1.41
HOXC11-202ENST00000546378 LCE2BO14633 110 aa6.24□□□□□ -1.41
HOXC11-202ENST00000546378 LCE3AQ5TA76 89 aa6.19□□□□□ -1.42
HOXC11-202ENST00000546378 USH2AO75445 5202 aa6.17□□□□□ -1.42
HOXC11-202ENST00000546378 KMT2DO14686 5537 aa6.13□□□□□ -1.43
HOXC11-202ENST00000546378 MT1FP04733 61 aa6.1□□□□□ -1.43
HOXC11-202ENST00000546378 MT2AP02795 61 aa6.09□□□□□ -1.43
HOXC11-202ENST00000546378 FSIP2Q5CZC0 6907 aa6.07□□□□□ -1.44
HOXC11-202ENST00000546378 KRTAP9-8Q9BYQ0 159 aa6.03□□□□□ -1.44
HOXC11-202ENST00000546378 KRTAP19-1Q8IUB9 90 aa5.97□□□□□ -1.45
HOXC11-202ENST00000546378 SPRR2GQ9BYE4 73 aa5.89□□□□□ -1.47
HOXC11-202ENST00000546378 LCE2AQ5TA79 106 aaPredicted RBP5.83□□□□□ -1.48
HOXC11-202ENST00000546378 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
HOXC11-202ENST00000546378 KRTAP9-3Q9BYQ3 159 aa5.8□□□□□ -1.48
HOXC11-202ENST00000546378 KRTAP10-12P60413 245 aa5.79□□□□□ -1.48
HOXC11-202ENST00000546378 KRTAP10-7P60409 375 aaPredicted RBP5.77□□□□□ -1.49
HOXC11-202ENST00000546378 OBSCNQ5VST9 7968 aa5.76□□□□□ -1.49
HOXC11-202ENST00000546378 SPRR5A0A1B0GTR4 108 aa5.73□□□□□ -1.49
HOXC11-202ENST00000546378 MT1BP07438 61 aa5.72□□□□□ -1.49
HOXC11-202ENST00000546378 KRTAP19-8Q3LI54 63 aa5.67□□□□□ -1.5
HOXC11-202ENST00000546378 DSTQ03001 7570 aaKnown RBP5.67□□□□□ -1.5
HOXC11-202ENST00000546378 KRTAP10-5P60370 271 aa5.65□□□□□ -1.5
HOXC11-202ENST00000546378 MT1XP80297 61 aa5.65□□□□□ -1.5
HOXC11-202ENST00000546378 PRO2289Q9P1D8 64 aa5.65□□□□□ -1.5
HOXC11-202ENST00000546378 KRTAP4-8A0A0G2JLE6 195 aa5.6□□□□□ -1.51
HOXC11-202ENST00000546378 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
HOXC11-202ENST00000546378 KRTAP23-1A1A580 65 aa5.59□□□□□ -1.51
HOXC11-202ENST00000546378 KRTAP8-1Q8IUC2 63 aa5.57□□□□□ -1.52
HOXC11-202ENST00000546378 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
HOXC11-202ENST00000546378 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
HOXC11-202ENST00000546378 SYNE1Q8NF91 8797 aaKnown RBP5.53□□□□□ -1.52
HOXC11-202ENST00000546378 FCGBPQ9Y6R7 5405 aaPredicted RBP5.52□□□□□ -1.53
HOXC11-202ENST00000546378 CRCT1Q9UGL9 99 aa5.5□□□□□ -1.53
HOXC11-202ENST00000546378 SSPOA2VEC9 5147 aa5.42□□□□□ -1.54
HOXC11-202ENST00000546378 INE1O15225 51 aa5.4□□□□□ -1.55
HOXC11-202ENST00000546378 MUC12Q9UKN1 5478 aa5.33□□□□□ -1.56
HOXC11-202ENST00000546378 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
HOXC11-202ENST00000546378 KRTAP9-6A8MVA2 160 aa5.29□□□□□ -1.56
HOXC11-202ENST00000546378 KRTAP9-2Q9BYQ4 174 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms