RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	KRTAP3-3	Q9BYR6	98 aa		6.65	□□□□□ -1.34
CPSF7-223	ENST00000544669	TPRXL	Q17RH7	258 aa		6.63	□□□□□ -1.35
CPSF7-223	ENST00000544669	KRTAP10-6	P60371	365 aa	Predicted RBP	6.62	□□□□□ -1.35
CPSF7-223	ENST00000544669	KRTAP25-1	Q3LHN0	102 aa		6.61	□□□□□ -1.35
CPSF7-223	ENST00000544669	FAT3	Q8TDW7	4589 aa		6.6	□□□□□ -1.35
CPSF7-223	ENST00000544669	MT1HL1	P0DM35	61 aa		6.6	□□□□□ -1.35
CPSF7-223	ENST00000544669		J3QL48	77 aa		6.59	□□□□□ -1.35
CPSF7-223	ENST00000544669	ROMO1	P60602	79 aa		6.58	□□□□□ -1.36
CPSF7-223	ENST00000544669	KRTAP3-2	Q9BYR7	98 aa		6.56	□□□□□ -1.36
CPSF7-223	ENST00000544669	TNXB	P22105	4242 aa		6.54	□□□□□ -1.36
CPSF7-223	ENST00000544669		M0QZ58	72 aa		6.51	□□□□□ -1.37
CPSF7-223	ENST00000544669	HSPG2	P98160	4391 aa		6.46	□□□□□ -1.38
CPSF7-223	ENST00000544669		A0A0D9SG42	100 aa		6.46	□□□□□ -1.38
CPSF7-223	ENST00000544669	DMBT1	Q9UGM3	2413 aa	Predicted RBP	6.45	□□□□□ -1.38
CPSF7-223	ENST00000544669	KRTAP13-4	Q3LI77	160 aa		6.45	□□□□□ -1.38
CPSF7-223	ENST00000544669		P0C880	135 aa		6.44	□□□□□ -1.38
CPSF7-223	ENST00000544669	SEC61B	P60468	96 aa	Known RBP	6.44	□□□□□ -1.38
CPSF7-223	ENST00000544669	RYR1	P21817	5038 aa		6.43	□□□□□ -1.38
CPSF7-223	ENST00000544669	LRP1	Q07954	4544 aa	Known RBP	6.43	□□□□□ -1.38
CPSF7-223	ENST00000544669	KMT2C	Q8NEZ4	4911 aa	Known RBP	6.41	□□□□□ -1.38
CPSF7-223	ENST00000544669	KRTAP17-1	Q9BYP8	105 aa		6.38	□□□□□ -1.39
CPSF7-223	ENST00000544669	CRIPT	Q9P021	101 aa		6.36	□□□□□ -1.39
CPSF7-223	ENST00000544669	KRTAP12-1	P59990	96 aa		6.32	□□□□□ -1.4
CPSF7-223	ENST00000544669	SPINT4	Q6UDR6	99 aa		6.31	□□□□□ -1.4
CPSF7-223	ENST00000544669	KRTAP12-2	P59991	146 aa		6.29	□□□□□ -1.4
CPSF7-223	ENST00000544669	LCE2D	Q5TA82	110 aa	Predicted RBP	6.28	□□□□□ -1.4
CPSF7-223	ENST00000544669		R4GN34	69 aa		6.25	□□□□□ -1.41
CPSF7-223	ENST00000544669	RYR3	Q15413	4870 aa		6.24	□□□□□ -1.41
CPSF7-223	ENST00000544669	KIAA1109	Q2LD37	5005 aa		6.22	□□□□□ -1.41
CPSF7-223	ENST00000544669	MYCBP2	O75592	4640 aa		6.21	□□□□□ -1.42
CPSF7-223	ENST00000544669	KRTAP4-5	Q9BYR2	181 aa		6.13	□□□□□ -1.43
CPSF7-223	ENST00000544669		H3BS24	57 aa		6.1	□□□□□ -1.43
CPSF7-223	ENST00000544669	C10orf95	Q9H7T3	257 aa		6.09	□□□□□ -1.44
CPSF7-223	ENST00000544669	LRP2	P98164	4655 aa		6.08	□□□□□ -1.44
CPSF7-223	ENST00000544669	KRTAP4-1	Q9BYQ7	146 aa		6.01	□□□□□ -1.45
CPSF7-223	ENST00000544669	LPA	P08519	4548 aa		6	□□□□□ -1.45
CPSF7-223	ENST00000544669	PP632	Q6XCG6	107 aa		5.99	□□□□□ -1.45
CPSF7-223	ENST00000544669	KRTAP19-2	Q3LHN2	52 aa		5.98	□□□□□ -1.45
CPSF7-223	ENST00000544669	EPPK1	P58107	5090 aa	Known RBP	5.98	□□□□□ -1.45
CPSF7-223	ENST00000544669	KRTAP15-1	Q3LI76	137 aa		5.97	□□□□□ -1.45
CPSF7-223	ENST00000544669	CAMK2N1	Q7Z7J9	78 aa		5.95	□□□□□ -1.46
CPSF7-223	ENST00000544669	MUC17	Q685J3	4493 aa		5.93	□□□□□ -1.46
CPSF7-223	ENST00000544669	LOR	P23490	312 aa	Predicted RBP	5.92	□□□□□ -1.46
CPSF7-223	ENST00000544669	ABCA13	Q86UQ4	5058 aa		5.91	□□□□□ -1.46
CPSF7-223	ENST00000544669	KRTAP23-1	A1A580	65 aa		5.83	□□□□□ -1.48
CPSF7-223	ENST00000544669	PLAC4	Q8WY50	150 aa		5.81	□□□□□ -1.48
CPSF7-223	ENST00000544669	TNP1	P09430	55 aa		5.77	□□□□□ -1.49
CPSF7-223	ENST00000544669	HERC2	O95714	4834 aa		5.76	□□□□□ -1.49
CPSF7-223	ENST00000544669		A0A0A0MQY5	61 aa		5.76	□□□□□ -1.49
CPSF7-223	ENST00000544669	NDUFAF8	A1L188	74 aa		5.76	□□□□□ -1.49
CPSF7-223	ENST00000544669	BIRC6	Q9NR09	4857 aa		5.7	□□□□□ -1.5
CPSF7-223	ENST00000544669	SPRR2G	Q9BYE4	73 aa		5.67	□□□□□ -1.5
CPSF7-223	ENST00000544669	FLG	P20930	4061 aa	Predicted RBP	5.67	□□□□□ -1.5
CPSF7-223	ENST00000544669	LUZP6	Q538Z0	58 aa		5.64	□□□□□ -1.51
CPSF7-223	ENST00000544669	LCE2C	Q5TA81	110 aa		5.63	□□□□□ -1.51
CPSF7-223	ENST00000544669		M0R2T5	61 aa		5.62	□□□□□ -1.51
CPSF7-223	ENST00000544669	HERC1	Q15751	4861 aa		5.6	□□□□□ -1.51
CPSF7-223	ENST00000544669	KRTAP19-1	Q8IUB9	90 aa		5.52	□□□□□ -1.53
CPSF7-223	ENST00000544669	MT1H	P80294	61 aa		5.51	□□□□□ -1.53
CPSF7-223	ENST00000544669	HMCN2	Q8NDA2	5059 aa		5.48	□□□□□ -1.53
CPSF7-223	ENST00000544669	KRTAP10-10	P60014	251 aa		5.48	□□□□□ -1.53
CPSF7-223	ENST00000544669	MT2A	P02795	61 aa		5.42	□□□□□ -1.54
CPSF7-223	ENST00000544669	KRTAP19-8	Q3LI54	63 aa		5.42	□□□□□ -1.54
CPSF7-223	ENST00000544669	MUC2	Q02817	5179 aa		5.42	□□□□□ -1.54
CPSF7-223	ENST00000544669	SPRR5	A0A1B0GTR4	108 aa		5.41	□□□□□ -1.54
CPSF7-223	ENST00000544669	LCE2B	O14633	110 aa		5.41	□□□□□ -1.54
CPSF7-223	ENST00000544669	KRTAP9-8	Q9BYQ0	159 aa		5.39	□□□□□ -1.55
CPSF7-223	ENST00000544669	MT1F	P04733	61 aa		5.38	□□□□□ -1.55
CPSF7-223	ENST00000544669	PCLO	Q9Y6V0	5065 aa		5.35	□□□□□ -1.55
CPSF7-223	ENST00000544669	LCE2A	Q5TA79	106 aa	Predicted RBP	5.34	□□□□□ -1.55
CPSF7-223	ENST00000544669	KRTAP8-1	Q8IUC2	63 aa		5.29	□□□□□ -1.56
CPSF7-223	ENST00000544669	LCE3A	Q5TA76	89 aa		5.28	□□□□□ -1.56
CPSF7-223	ENST00000544669	PRO2289	Q9P1D8	64 aa		5.26	□□□□□ -1.57
CPSF7-223	ENST00000544669	MT1B	P07438	61 aa		5.23	□□□□□ -1.57
CPSF7-223	ENST00000544669	KRTAP10-5	P60370	271 aa		5.21	□□□□□ -1.58
CPSF7-223	ENST00000544669	RNF213	Q63HN8	5207 aa		5.21	□□□□□ -1.58
CPSF7-223	ENST00000544669	MT1X	P80297	61 aa		5.19	□□□□□ -1.58
CPSF7-223	ENST00000544669	KRTAP10-12	P60413	245 aa		5.18	□□□□□ -1.58
CPSF7-223	ENST00000544669	KRTAP9-3	Q9BYQ3	159 aa		5.18	□□□□□ -1.58
CPSF7-223	ENST00000544669	FAT4	Q6V0I7	4981 aa		5.18	□□□□□ -1.58
CPSF7-223	ENST00000544669	KRTAP12-3	P60328	96 aa		5.12	□□□□□ -1.59
CPSF7-223	ENST00000544669	UBR4	Q5T4S7	5183 aa		5.09	□□□□□ -1.59
CPSF7-223	ENST00000544669	KRTAP10-7	P60409	375 aa	Predicted RBP	4.99	□□□□□ -1.61
CPSF7-223	ENST00000544669	KRTAP19-4	Q3LI73	84 aa		4.95	□□□□□ -1.62
CPSF7-223	ENST00000544669	INE1	O15225	51 aa		4.9	□□□□□ -1.62
CPSF7-223	ENST00000544669	KRTAP19-5	Q3LI72	72 aa		4.83	□□□□□ -1.64
CPSF7-223	ENST00000544669	LCE3C	Q5T5A8	94 aa		4.83	□□□□□ -1.64
CPSF7-223	ENST00000544669	KRTAP4-8	A0A0G2JLE6	195 aa		4.62	□□□□□ -1.67
CPSF7-223	ENST00000544669	KRTAP19-7	Q3SYF9	63 aa		4.62	□□□□□ -1.67
CPSF7-223	ENST00000544669	KRTAP4-8	Q9BYQ9	185 aa		4.62	□□□□□ -1.67
CPSF7-223	ENST00000544669	KRTAP19-6	Q3LI70	58 aa		4.55	□□□□□ -1.68
CPSF7-223	ENST00000544669	MT1E	P04732	61 aa		4.53	□□□□□ -1.68
CPSF7-223	ENST00000544669	MT1L	Q93083	61 aa		4.53	□□□□□ -1.68
CPSF7-223	ENST00000544669	USH2A	O75445	5202 aa		4.5	□□□□□ -1.69
CPSF7-223	ENST00000544669	KRTAP2-3	P0C7H8	128 aa		4.48	□□□□□ -1.69
CPSF7-223	ENST00000544669	KRTAP2-4	Q9BYR9	128 aa		4.48	□□□□□ -1.69
CPSF7-223	ENST00000544669	KRTAP2-1	Q9BYU5	128 aa		4.48	□□□□□ -1.69
CPSF7-223	ENST00000544669	KRTAP9-6	A8MVA2	160 aa		4.46	□□□□□ -1.7
CPSF7-223	ENST00000544669	KRTAP4-7	Q9BYR0	210 aa		4.35	□□□□□ -1.71
CPSF7-223	ENST00000544669	MT1G	P13640	62 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms