RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PRKDCP78527 4128 aaKnown RBP7.04□□□□□ -1.28
LIMS1-215ENST00000544547 DNAH7Q8WXX0 4024 aa7.04□□□□□ -1.28
LIMS1-215ENST00000544547 CMYA5Q8N3K9 4069 aa7.03□□□□□ -1.28
LIMS1-215ENST00000544547 LRP1BQ9NZR2 4599 aa7.02□□□□□ -1.29
LIMS1-215ENST00000544547 PP632Q6XCG6 107 aa7.01□□□□□ -1.29
LIMS1-215ENST00000544547 DNAH17Q9UFH2 4485 aa7□□□□□ -1.29
LIMS1-215ENST00000544547 DNAH3Q8TD57 4116 aa6.98□□□□□ -1.29
LIMS1-215ENST00000544547 KRTAP3-2Q9BYR7 98 aa6.97□□□□□ -1.29
LIMS1-215ENST00000544547 DNHD1Q96M86 4753 aa6.97□□□□□ -1.29
LIMS1-215ENST00000544547 KRTAP10-10P60014 251 aa6.97□□□□□ -1.29
LIMS1-215ENST00000544547 DNAH5Q8TE73 4624 aa6.97□□□□□ -1.29
LIMS1-215ENST00000544547 DNAH2Q9P225 4427 aa6.95□□□□□ -1.3
LIMS1-215ENST00000544547 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
LIMS1-215ENST00000544547 FAT1Q14517 4588 aa6.92□□□□□ -1.3
LIMS1-215ENST00000544547 DNAH6Q9C0G6 4158 aa6.87□□□□□ -1.31
LIMS1-215ENST00000544547 ALMS1Q8TCU4 4167 aa6.86□□□□□ -1.31
LIMS1-215ENST00000544547 HECTD4Q9Y4D8 3996 aa6.83□□□□□ -1.32
LIMS1-215ENST00000544547 KRTAP10-4P60372 401 aaPredicted RBP6.82□□□□□ -1.32
LIMS1-215ENST00000544547 VPS13BQ7Z7G8 4022 aa6.8□□□□□ -1.32
LIMS1-215ENST00000544547 PRO2289Q9P1D8 64 aa6.75□□□□□ -1.33
LIMS1-215ENST00000544547 DYNC2H1Q8NCM8 4307 aaKnown RBP6.74□□□□□ -1.33
LIMS1-215ENST00000544547 DYNC1H1Q14204 4646 aaKnown RBP6.73□□□□□ -1.33
LIMS1-215ENST00000544547 MYCBP2O75592 4640 aa6.72□□□□□ -1.33
LIMS1-215ENST00000544547 MT1HL1P0DM35 61 aa6.61□□□□□ -1.35
LIMS1-215ENST00000544547 HYDINQ4G0P3 5121 aa6.59□□□□□ -1.35
LIMS1-215ENST00000544547 SACSQ9NZJ4 4579 aa6.58□□□□□ -1.36
LIMS1-215ENST00000544547 PKHD1P08F94 4074 aa6.55□□□□□ -1.36
LIMS1-215ENST00000544547 LRP1Q07954 4544 aaKnown RBP6.54□□□□□ -1.36
LIMS1-215ENST00000544547 LORP23490 312 aaPredicted RBP6.47□□□□□ -1.37
LIMS1-215ENST00000544547 FAT2Q9NYQ8 4349 aa6.47□□□□□ -1.37
LIMS1-215ENST00000544547 FAT3Q8TDW7 4589 aa6.45□□□□□ -1.38
LIMS1-215ENST00000544547 APOBP04114 4563 aaKnown RBP6.45□□□□□ -1.38
LIMS1-215ENST00000544547 KRTAP4-5Q9BYR2 181 aa6.43□□□□□ -1.38
LIMS1-215ENST00000544547 RYR1P21817 5038 aa6.41□□□□□ -1.38
LIMS1-215ENST00000544547 KIAA1109Q2LD37 5005 aa6.39□□□□□ -1.39
LIMS1-215ENST00000544547 PKD1P98161 4303 aa6.32□□□□□ -1.4
LIMS1-215ENST00000544547 RYR3Q15413 4870 aa6.26□□□□□ -1.41
LIMS1-215ENST00000544547 LRP2P98164 4655 aa6.25□□□□□ -1.41
LIMS1-215ENST00000544547 KRTAP17-1Q9BYP8 105 aa6.24□□□□□ -1.41
LIMS1-215ENST00000544547 HSPG2P98160 4391 aa6.17□□□□□ -1.42
LIMS1-215ENST00000544547 KRTAP4-1Q9BYQ7 146 aa6.17□□□□□ -1.42
LIMS1-215ENST00000544547 KMT2CQ8NEZ4 4911 aaKnown RBP6.16□□□□□ -1.42
LIMS1-215ENST00000544547 RYR2Q92736 4967 aa6.14□□□□□ -1.43
LIMS1-215ENST00000544547 INE1O15225 51 aa6.1□□□□□ -1.43
LIMS1-215ENST00000544547 LCE3AQ5TA76 89 aa6.04□□□□□ -1.44
LIMS1-215ENST00000544547 LPAP08519 4548 aa6.02□□□□□ -1.45
LIMS1-215ENST00000544547 KRTAP10-12P60413 245 aa6.01□□□□□ -1.45
LIMS1-215ENST00000544547 PKHD1L1Q86WI1 4243 aa6□□□□□ -1.45
LIMS1-215ENST00000544547 KRTAP23-1A1A580 65 aa5.95□□□□□ -1.46
LIMS1-215ENST00000544547 TNXBP22105 4242 aa5.92□□□□□ -1.46
LIMS1-215ENST00000544547 CRCT1Q9UGL9 99 aa5.9□□□□□ -1.46
LIMS1-215ENST00000544547 KRTAP12-3P60328 96 aa5.88□□□□□ -1.47
LIMS1-215ENST00000544547 HERC2O95714 4834 aa5.82□□□□□ -1.48
LIMS1-215ENST00000544547 EPPK1P58107 5090 aaKnown RBP5.74□□□□□ -1.49
LIMS1-215ENST00000544547 ABCA13Q86UQ4 5058 aa5.72□□□□□ -1.49
LIMS1-215ENST00000544547 MUC2Q02817 5179 aa5.66□□□□□ -1.5
LIMS1-215ENST00000544547 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
LIMS1-215ENST00000544547 SPRR2GQ9BYE4 73 aa5.6□□□□□ -1.51
LIMS1-215ENST00000544547 MT1HP80294 61 aa5.59□□□□□ -1.51
LIMS1-215ENST00000544547 MT2AP02795 61 aa5.57□□□□□ -1.52
LIMS1-215ENST00000544547 MT1FP04733 61 aa5.56□□□□□ -1.52
LIMS1-215ENST00000544547 KRTAP19-1Q8IUB9 90 aa5.54□□□□□ -1.52
LIMS1-215ENST00000544547 KRTAP8-1Q8IUC2 63 aa5.54□□□□□ -1.52
LIMS1-215ENST00000544547 KRTAP19-2Q3LHN2 52 aa5.52□□□□□ -1.53
LIMS1-215ENST00000544547 MUC17Q685J3 4493 aa5.5□□□□□ -1.53
LIMS1-215ENST00000544547 KRTAP10-5P60370 271 aa5.46□□□□□ -1.53
LIMS1-215ENST00000544547 FAT4Q6V0I7 4981 aa5.46□□□□□ -1.54
LIMS1-215ENST00000544547 FLGP20930 4061 aaPredicted RBP5.42□□□□□ -1.54
LIMS1-215ENST00000544547 HERC1Q15751 4861 aa5.4□□□□□ -1.54
LIMS1-215ENST00000544547 LCE2CQ5TA81 110 aa5.4□□□□□ -1.54
LIMS1-215ENST00000544547 RNF213Q63HN8 5207 aa5.37□□□□□ -1.55
LIMS1-215ENST00000544547 PCLOQ9Y6V0 5065 aa5.34□□□□□ -1.55
LIMS1-215ENST00000544547 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
LIMS1-215ENST00000544547 BIRC6Q9NR09 4857 aa5.31□□□□□ -1.56
LIMS1-215ENST00000544547 KRTAP10-7P60409 375 aaPredicted RBP5.31□□□□□ -1.56
LIMS1-215ENST00000544547 LCE3CQ5T5A8 94 aa5.29□□□□□ -1.56
LIMS1-215ENST00000544547 KRTAP9-8Q9BYQ0 159 aa5.28□□□□□ -1.56
LIMS1-215ENST00000544547 MT1XP80297 61 aa5.27□□□□□ -1.57
LIMS1-215ENST00000544547 MT1BP07438 61 aa5.25□□□□□ -1.57
LIMS1-215ENST00000544547 KRTAP19-8Q3LI54 63 aa5.24□□□□□ -1.57
LIMS1-215ENST00000544547 UBR4Q5T4S7 5183 aa5.22□□□□□ -1.57
LIMS1-215ENST00000544547 HMCN2Q8NDA2 5059 aa5.19□□□□□ -1.58
LIMS1-215ENST00000544547 SPRR2FQ96RM1 72 aa5.18□□□□□ -1.58
LIMS1-215ENST00000544547 SYNE1Q8NF91 8797 aaKnown RBP5.15□□□□□ -1.59
LIMS1-215ENST00000544547 KRTAP4-8A0A0G2JLE6 195 aa5.07□□□□□ -1.6
LIMS1-215ENST00000544547 KRTAP4-8Q9BYQ9 185 aa5.07□□□□□ -1.6
LIMS1-215ENST00000544547 KRTAP9-3Q9BYQ3 159 aa5.06□□□□□ -1.6
LIMS1-215ENST00000544547 FSIP2Q5CZC0 6907 aa5.01□□□□□ -1.61
LIMS1-215ENST00000544547 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
LIMS1-215ENST00000544547 KRTAP12-4P60329 112 aa4.94□□□□□ -1.62
LIMS1-215ENST00000544547 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
LIMS1-215ENST00000544547 LCE2BO14633 110 aa4.91□□□□□ -1.62
LIMS1-215ENST00000544547 LCE2DQ5TA82 110 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-215ENST00000544547 USH2AO75445 5202 aa4.84□□□□□ -1.63
LIMS1-215ENST00000544547 KMT2DO14686 5537 aa4.81□□□□□ -1.64
LIMS1-215ENST00000544547 OBSCNQ5VST9 7968 aa4.79□□□□□ -1.64
LIMS1-215ENST00000544547 MT1GP13640 62 aa4.78□□□□□ -1.64
LIMS1-215ENST00000544547 SPRR2EP22531 72 aa4.76□□□□□ -1.65
LIMS1-215ENST00000544547 SPRR2BP35325 72 aa4.76□□□□□ -1.65
LIMS1-215ENST00000544547 SPRR2AP35326 72 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms