RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 K7ERS5 55 aa7.22□□□□□ -1.25
VPS33A-208ENST00000543633 KIAA1109Q2LD37 5005 aa7.21□□□□□ -1.26
VPS33A-208ENST00000543633 KRTAP25-1Q3LHN0 102 aa7.2□□□□□ -1.26
VPS33A-208ENST00000543633 Q5VSD8 79 aa7.17□□□□□ -1.26
VPS33A-208ENST00000543633 FLG2Q5D862 2391 aaPredicted RBP7.1□□□□□ -1.27
VPS33A-208ENST00000543633 RPL37P61927 97 aaKnown RBP7.1□□□□□ -1.27
VPS33A-208ENST00000543633 LRP1Q07954 4544 aaKnown RBP7.07□□□□□ -1.28
VPS33A-208ENST00000543633 KRTAP10-6P60371 365 aaPredicted RBP7.06□□□□□ -1.28
VPS33A-208ENST00000543633 KRTAP10-8P60410 259 aa7.06□□□□□ -1.28
VPS33A-208ENST00000543633 KRTAP3-3Q9BYR6 98 aa7.06□□□□□ -1.28
VPS33A-208ENST00000543633 ROMO1P60602 79 aa7.04□□□□□ -1.28
VPS33A-208ENST00000543633 TNXBP22105 4242 aa7.02□□□□□ -1.29
VPS33A-208ENST00000543633 S4R3F8 94 aa7.02□□□□□ -1.29
VPS33A-208ENST00000543633 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
VPS33A-208ENST00000543633 FAT3Q8TDW7 4589 aa7□□□□□ -1.29
VPS33A-208ENST00000543633 MYCBP2O75592 4640 aa7□□□□□ -1.29
VPS33A-208ENST00000543633 KRTAP4-5Q9BYR2 181 aa7□□□□□ -1.29
VPS33A-208ENST00000543633 XP32Q5T750 250 aa6.99□□□□□ -1.29
VPS33A-208ENST00000543633 KRTAP13-4Q3LI77 160 aa6.96□□□□□ -1.3
VPS33A-208ENST00000543633 MT1HL1P0DM35 61 aa6.94□□□□□ -1.3
VPS33A-208ENST00000543633 BIRC6Q9NR09 4857 aa6.94□□□□□ -1.3
VPS33A-208ENST00000543633 HERC2O95714 4834 aa6.89□□□□□ -1.31
VPS33A-208ENST00000543633 A0A0D9SG42 100 aa6.87□□□□□ -1.31
VPS33A-208ENST00000543633 DMBT1Q9UGM3 2413 aaPredicted RBP6.87□□□□□ -1.31
VPS33A-208ENST00000543633 P0C880 135 aa6.86□□□□□ -1.31
VPS33A-208ENST00000543633 CRIPTQ9P021 101 aa6.85□□□□□ -1.31
VPS33A-208ENST00000543633 ABCA13Q86UQ4 5058 aa6.85□□□□□ -1.31
VPS33A-208ENST00000543633 TPRXLQ17RH7 258 aa6.79□□□□□ -1.32
VPS33A-208ENST00000543633 M0QZ58 72 aa6.77□□□□□ -1.32
VPS33A-208ENST00000543633 KRTAP12-2P59991 146 aa6.76□□□□□ -1.33
VPS33A-208ENST00000543633 KRTAP12-1P59990 96 aa6.75□□□□□ -1.33
VPS33A-208ENST00000543633 SPINT4Q6UDR6 99 aa6.68□□□□□ -1.34
VPS33A-208ENST00000543633 PCLOQ9Y6V0 5065 aa6.68□□□□□ -1.34
VPS33A-208ENST00000543633 J3QL48 77 aa6.66□□□□□ -1.34
VPS33A-208ENST00000543633 C10orf95Q9H7T3 257 aa6.66□□□□□ -1.34
VPS33A-208ENST00000543633 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.36
VPS33A-208ENST00000543633 LPAP08519 4548 aa6.57□□□□□ -1.36
VPS33A-208ENST00000543633 A0A0A0MQY5 61 aa6.57□□□□□ -1.36
VPS33A-208ENST00000543633 LRP2P98164 4655 aa6.54□□□□□ -1.36
VPS33A-208ENST00000543633 HERC1Q15751 4861 aa6.5□□□□□ -1.37
VPS33A-208ENST00000543633 R4GN34 69 aa6.49□□□□□ -1.37
VPS33A-208ENST00000543633 SEC61BP60468 96 aaKnown RBP6.48□□□□□ -1.37
VPS33A-208ENST00000543633 HMCN2Q8NDA2 5059 aa6.4□□□□□ -1.39
VPS33A-208ENST00000543633 NDUFAF8A1L188 74 aa6.38□□□□□ -1.39
VPS33A-208ENST00000543633 MUC17Q685J3 4493 aa6.3□□□□□ -1.4
VPS33A-208ENST00000543633 LORP23490 312 aaPredicted RBP6.3□□□□□ -1.4
VPS33A-208ENST00000543633 KRTAP4-1Q9BYQ7 146 aa6.29□□□□□ -1.4
VPS33A-208ENST00000543633 PP632Q6XCG6 107 aa6.28□□□□□ -1.4
VPS33A-208ENST00000543633 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
VPS33A-208ENST00000543633 PLAC4Q8WY50 150 aa6.23□□□□□ -1.41
VPS33A-208ENST00000543633 MUC2Q02817 5179 aa6.2□□□□□ -1.42
VPS33A-208ENST00000543633 CAMK2N1Q7Z7J9 78 aa6.16□□□□□ -1.42
VPS33A-208ENST00000543633 UBR4Q5T4S7 5183 aa6.12□□□□□ -1.43
VPS33A-208ENST00000543633 KRTAP23-1A1A580 65 aa6.1□□□□□ -1.43
VPS33A-208ENST00000543633 RNF213Q63HN8 5207 aa6.04□□□□□ -1.44
VPS33A-208ENST00000543633 TNP1P09430 55 aa6.01□□□□□ -1.45
VPS33A-208ENST00000543633 LUZP6Q538Z0 58 aa6.01□□□□□ -1.45
VPS33A-208ENST00000543633 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
VPS33A-208ENST00000543633 LCE2CQ5TA81 110 aa5.99□□□□□ -1.45
VPS33A-208ENST00000543633 FAT4Q6V0I7 4981 aa5.94□□□□□ -1.46
VPS33A-208ENST00000543633 SPRR5A0A1B0GTR4 108 aa5.89□□□□□ -1.47
VPS33A-208ENST00000543633 SPRR2GQ9BYE4 73 aa5.87□□□□□ -1.47
VPS33A-208ENST00000543633 MT1HP80294 61 aa5.84□□□□□ -1.47
VPS33A-208ENST00000543633 KRTAP19-1Q8IUB9 90 aa5.75□□□□□ -1.49
VPS33A-208ENST00000543633 M0R2T5 61 aa5.71□□□□□ -1.5
VPS33A-208ENST00000543633 KRTAP9-8Q9BYQ0 159 aa5.65□□□□□ -1.51
VPS33A-208ENST00000543633 LCE2AQ5TA79 106 aaPredicted RBP5.64□□□□□ -1.51
VPS33A-208ENST00000543633 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
VPS33A-208ENST00000543633 MT2AP02795 61 aa5.61□□□□□ -1.51
VPS33A-208ENST00000543633 KRTAP19-8Q3LI54 63 aa5.6□□□□□ -1.51
VPS33A-208ENST00000543633 MT1FP04733 61 aa5.58□□□□□ -1.52
VPS33A-208ENST00000543633 KRTAP8-1Q8IUC2 63 aa5.57□□□□□ -1.52
VPS33A-208ENST00000543633 KRTAP10-10P60014 251 aa5.56□□□□□ -1.52
VPS33A-208ENST00000543633 MT1BP07438 61 aa5.45□□□□□ -1.54
VPS33A-208ENST00000543633 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
VPS33A-208ENST00000543633 KRTAP9-2Q9BYQ4 174 aa5.45□□□□□ -1.54
VPS33A-208ENST00000543633 MT1XP80297 61 aa5.44□□□□□ -1.54
VPS33A-208ENST00000543633 KRTAP9-3Q9BYQ3 159 aa5.43□□□□□ -1.54
VPS33A-208ENST00000543633 KRTAP9-6A0A140TA67 174 aa5.43□□□□□ -1.54
VPS33A-208ENST00000543633 KRTAP10-12P60413 245 aa5.4□□□□□ -1.55
VPS33A-208ENST00000543633 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
VPS33A-208ENST00000543633 INE1O15225 51 aa5.31□□□□□ -1.56
VPS33A-208ENST00000543633 LCE2BO14633 110 aa5.3□□□□□ -1.56
VPS33A-208ENST00000543633 PRO2289Q9P1D8 64 aa5.29□□□□□ -1.56
VPS33A-208ENST00000543633 KRTAP10-7P60409 375 aaPredicted RBP5.24□□□□□ -1.57
VPS33A-208ENST00000543633 USH2AO75445 5202 aa5.14□□□□□ -1.59
VPS33A-208ENST00000543633 LCE2DQ5TA82 110 aaPredicted RBP5.09□□□□□ -1.6
VPS33A-208ENST00000543633 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
VPS33A-208ENST00000543633 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
VPS33A-208ENST00000543633 CRCT1Q9UGL9 99 aa5.05□□□□□ -1.6
VPS33A-208ENST00000543633 FSIP2Q5CZC0 6907 aa5□□□□□ -1.61
VPS33A-208ENST00000543633 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
VPS33A-208ENST00000543633 SSPOA2VEC9 5147 aa4.98□□□□□ -1.61
VPS33A-208ENST00000543633 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.62
VPS33A-208ENST00000543633 KRTAP19-7Q3SYF9 63 aa4.84□□□□□ -1.63
VPS33A-208ENST00000543633 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
VPS33A-208ENST00000543633 KRTAP4-8A0A0G2JLE6 195 aa4.82□□□□□ -1.64
VPS33A-208ENST00000543633 KRTAP9-7A8MTY7 169 aa4.82□□□□□ -1.64
VPS33A-208ENST00000543633 KRTAP4-8Q9BYQ9 185 aa4.82□□□□□ -1.64
VPS33A-208ENST00000543633 KRTAP2-3P0C7H8 128 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms