RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 KRTAP13-3Q3SY46 172 aa4.51□□□□□ -1.69
PDLIM5-221ENST00000542407 PKHD1L1Q86WI1 4243 aa4.51□□□□□ -1.69
PDLIM5-221ENST00000542407 KRTAP10-4P60372 401 aaPredicted RBP4.5□□□□□ -1.69
PDLIM5-221ENST00000542407 FAT1Q14517 4588 aa4.5□□□□□ -1.69
PDLIM5-221ENST00000542407 FLG2Q5D862 2391 aaPredicted RBP4.5□□□□□ -1.69
PDLIM5-221ENST00000542407 IGKV2D-30A0A075B6S6 120 aa4.48□□□□□ -1.69
PDLIM5-221ENST00000542407 IGKV2-30P06310 120 aa4.48□□□□□ -1.69
PDLIM5-221ENST00000542407 SMR3BP02814 79 aaPredicted RBP4.46□□□□□ -1.7
PDLIM5-221ENST00000542407 CAMK2N1Q7Z7J9 78 aa4.45□□□□□ -1.7
PDLIM5-221ENST00000542407 HSPG2P98160 4391 aa4.44□□□□□ -1.7
PDLIM5-221ENST00000542407 RYR1P21817 5038 aa4.41□□□□□ -1.7
PDLIM5-221ENST00000542407 Q8N1X5 172 aa4.41□□□□□ -1.7
PDLIM5-221ENST00000542407 TYMSOSQ8TAI1 123 aa4.4□□□□□ -1.7
PDLIM5-221ENST00000542407 H0YAA0 97 aa4.38□□□□□ -1.71
PDLIM5-221ENST00000542407 TNXBP22105 4242 aa4.38□□□□□ -1.71
PDLIM5-221ENST00000542407 RPS29P62273 56 aaKnown RBP4.37□□□□□ -1.71
PDLIM5-221ENST00000542407 KRTAP17-1Q9BYP8 105 aa4.37□□□□□ -1.71
PDLIM5-221ENST00000542407 EPPK1P58107 5090 aaKnown RBP4.35□□□□□ -1.71
PDLIM5-221ENST00000542407 TPRXLQ17RH7 258 aa4.35□□□□□ -1.71
PDLIM5-221ENST00000542407 A0A1B0GU33 70 aa4.33□□□□□ -1.72
PDLIM5-221ENST00000542407 FAT3Q8TDW7 4589 aa4.33□□□□□ -1.72
PDLIM5-221ENST00000542407 LRP1Q07954 4544 aaKnown RBP4.33□□□□□ -1.72
PDLIM5-221ENST00000542407 KIAA1109Q2LD37 5005 aa4.32□□□□□ -1.72
PDLIM5-221ENST00000542407 Q5VSD8 79 aa4.32□□□□□ -1.72
PDLIM5-221ENST00000542407 BIRC6Q9NR09 4857 aa4.29□□□□□ -1.72
PDLIM5-221ENST00000542407 KRTAP10-8P60410 259 aa4.28□□□□□ -1.72
PDLIM5-221ENST00000542407 H1FX-AS1Q4G0G2 97 aa4.27□□□□□ -1.73
PDLIM5-221ENST00000542407 DMBT1Q9UGM3 2413 aaPredicted RBP4.27□□□□□ -1.73
PDLIM5-221ENST00000542407 MYCBP2O75592 4640 aa4.23□□□□□ -1.73
PDLIM5-221ENST00000542407 C10orf95Q9H7T3 257 aa4.22□□□□□ -1.73
PDLIM5-221ENST00000542407 MT1HL1P0DM35 61 aa4.22□□□□□ -1.73
PDLIM5-221ENST00000542407 C9orf92A6NGG3 77 aa4.2□□□□□ -1.74
PDLIM5-221ENST00000542407 A0A0D9SG42 100 aa4.19□□□□□ -1.74
PDLIM5-221ENST00000542407 COX6B2Q6YFQ2 88 aa4.19□□□□□ -1.74
PDLIM5-221ENST00000542407 KRTAP4-5Q9BYR2 181 aa4.17□□□□□ -1.74
PDLIM5-221ENST00000542407 RPL37P61927 97 aaKnown RBP4.14□□□□□ -1.75
PDLIM5-221ENST00000542407 ABCA13Q86UQ4 5058 aa4.14□□□□□ -1.75
PDLIM5-221ENST00000542407 PRO2289Q9P1D8 64 aa4.13□□□□□ -1.75
PDLIM5-221ENST00000542407 HERC2O95714 4834 aa4.12□□□□□ -1.75
PDLIM5-221ENST00000542407 XP32Q5T750 250 aa4.09□□□□□ -1.75
PDLIM5-221ENST00000542407 LOC100996750A0A140TA64 210 aa4.08□□□□□ -1.76
PDLIM5-221ENST00000542407 KRTAP4-6Q9BYQ5 205 aa4.08□□□□□ -1.76
PDLIM5-221ENST00000542407 R4GN34 69 aa4.08□□□□□ -1.76
PDLIM5-221ENST00000542407 KRTAP13-4Q3LI77 160 aa4.07□□□□□ -1.76
PDLIM5-221ENST00000542407 PLAC4Q8WY50 150 aa4.05□□□□□ -1.76
PDLIM5-221ENST00000542407 LPAP08519 4548 aa4.03□□□□□ -1.76
PDLIM5-221ENST00000542407 KRTAP10-6P60371 365 aaPredicted RBP4.01□□□□□ -1.77
PDLIM5-221ENST00000542407 LRP2P98164 4655 aa4.01□□□□□ -1.77
PDLIM5-221ENST00000542407 S4R3F8 94 aa4□□□□□ -1.77
PDLIM5-221ENST00000542407 KRTAP12-2P59991 146 aa3.97□□□□□ -1.77
PDLIM5-221ENST00000542407 MUC17Q685J3 4493 aa3.94□□□□□ -1.78
PDLIM5-221ENST00000542407 PCLOQ9Y6V0 5065 aa3.94□□□□□ -1.78
PDLIM5-221ENST00000542407 KRTAP12-1P59990 96 aa3.89□□□□□ -1.79
PDLIM5-221ENST00000542407 HMCN2Q8NDA2 5059 aa3.87□□□□□ -1.79
PDLIM5-221ENST00000542407 KRTAP4-1Q9BYQ7 146 aa3.86□□□□□ -1.79
PDLIM5-221ENST00000542407 HERC1Q15751 4861 aa3.86□□□□□ -1.79
PDLIM5-221ENST00000542407 INE1O15225 51 aa3.84□□□□□ -1.79
PDLIM5-221ENST00000542407 KRTAP19-2Q3LHN2 52 aa3.8□□□□□ -1.8
PDLIM5-221ENST00000542407 MUC2Q02817 5179 aa3.76□□□□□ -1.81
PDLIM5-221ENST00000542407 KRTAP9-4Q9BYQ2 154 aa3.75□□□□□ -1.81
PDLIM5-221ENST00000542407 M0QZ58 72 aa3.75□□□□□ -1.81
PDLIM5-221ENST00000542407 FLGP20930 4061 aaPredicted RBP3.71□□□□□ -1.82
PDLIM5-221ENST00000542407 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
PDLIM5-221ENST00000542407 LCE4AQ5TA78 99 aa3.7□□□□□ -1.82
PDLIM5-221ENST00000542407 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
PDLIM5-221ENST00000542407 UBR4Q5T4S7 5183 aa3.68□□□□□ -1.82
PDLIM5-221ENST00000542407 RNF213Q63HN8 5207 aa3.67□□□□□ -1.82
PDLIM5-221ENST00000542407 KRTAP9-6A0A140TA67 174 aa3.66□□□□□ -1.82
PDLIM5-221ENST00000542407 KRTAP9-7A8MTY7 169 aa3.66□□□□□ -1.82
PDLIM5-221ENST00000542407 KRTAP19-4Q3LI73 84 aa3.61□□□□□ -1.83
PDLIM5-221ENST00000542407 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
PDLIM5-221ENST00000542407 FAT4Q6V0I7 4981 aa3.59□□□□□ -1.83
PDLIM5-221ENST00000542407 PP632Q6XCG6 107 aa3.57□□□□□ -1.84
PDLIM5-221ENST00000542407 MT1HP80294 61 aa3.54□□□□□ -1.84
PDLIM5-221ENST00000542407 KRTAP4-8Q9BYQ9 185 aa3.47□□□□□ -1.85
PDLIM5-221ENST00000542407 KRTAP9-2Q9BYQ4 174 aa3.47□□□□□ -1.85
PDLIM5-221ENST00000542407 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
PDLIM5-221ENST00000542407 MT2AP02795 61 aa3.42□□□□□ -1.86
PDLIM5-221ENST00000542407 M0R2T5 61 aa3.42□□□□□ -1.86
PDLIM5-221ENST00000542407 MT1FP04733 61 aa3.42□□□□□ -1.86
PDLIM5-221ENST00000542407 TNP1P09430 55 aa3.41□□□□□ -1.86
PDLIM5-221ENST00000542407 SPRR2GQ9BYE4 73 aa3.41□□□□□ -1.86
PDLIM5-221ENST00000542407 KRTAP19-1Q8IUB9 90 aa3.4□□□□□ -1.86
PDLIM5-221ENST00000542407 KRTAP10-10P60014 251 aa3.35□□□□□ -1.87
PDLIM5-221ENST00000542407 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
PDLIM5-221ENST00000542407 KRTAP9-3Q9BYQ3 159 aa3.33□□□□□ -1.88
PDLIM5-221ENST00000542407 KRTAP4-8A0A0G2JLE6 195 aa3.31□□□□□ -1.88
PDLIM5-221ENST00000542407 KRTAP19-8Q3LI54 63 aa3.3□□□□□ -1.88
PDLIM5-221ENST00000542407 KRTAP4-7Q9BYR0 210 aa3.28□□□□□ -1.88
PDLIM5-221ENST00000542407 CRCT1Q9UGL9 99 aa3.28□□□□□ -1.88
PDLIM5-221ENST00000542407 MT1BP07438 61 aa3.27□□□□□ -1.89
PDLIM5-221ENST00000542407 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
PDLIM5-221ENST00000542407 LCE1AQ5T7P2 110 aa3.22□□□□□ -1.89
PDLIM5-221ENST00000542407 KRTAP5-3Q6L8H2 238 aa3.2□□□□□ -1.9
PDLIM5-221ENST00000542407 LCE3AQ5TA76 89 aa3.2□□□□□ -1.9
PDLIM5-221ENST00000542407 KRTAP10-5P60370 271 aa3.18□□□□□ -1.9
PDLIM5-221ENST00000542407 MT1XP80297 61 aa3.18□□□□□ -1.9
PDLIM5-221ENST00000542407 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
PDLIM5-221ENST00000542407 USH2AO75445 5202 aa3.13□□□□□ -1.91
PDLIM5-221ENST00000542407 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms