RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 LYSTQ99698 3801 aa1.22□□□□□ -2.21
USP28-210ENST00000542033 CCDC168Q8NDH2 2452 aa1.22□□□□□ -2.21
USP28-210ENST00000542033 C9orf92A6NGG3 77 aa1.21□□□□□ -2.22
USP28-210ENST00000542033 NIPBLQ6KC79 2804 aaeCLIP1.21□□□□□ -2.22
USP28-210ENST00000542033 HECTD1Q9ULT8 2610 aa1.21□□□□□ -2.22
USP28-210ENST00000542033 DNAH1Q9P2D7 4330 aa1.21□□□□□ -2.22
USP28-210ENST00000542033 SONP18583 2426 aaKnown RBP1.2□□□□□ -2.22
USP28-210ENST00000542033 F8P00451 2351 aa1.2□□□□□ -2.22
USP28-210ENST00000542033 MYO9AB2RTY4 2548 aa1.2□□□□□ -2.22
USP28-210ENST00000542033 HELZ2Q9BYK8 2649 aaKnown RBP1.19□□□□□ -2.22
USP28-210ENST00000542033 COL7A1Q02388 2944 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 ZNF292O60281 2723 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 PIEZO1Q92508 2521 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 PKD1L1Q8TDX9 2849 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 NAV2Q8IVL1 2488 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 VPS13DQ5THJ4 4388 aa1.19□□□□□ -2.22
USP28-210ENST00000542033 CFAP46Q8IYW2 2715 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 JMJD1CQ15652 2540 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 ZNF462Q96JM2 2506 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 TNP1P09430 55 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 CRCT1Q9UGL9 99 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 MUC6Q6W4X9 2439 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 TGP01266 2768 aa1.18□□□□□ -2.22
USP28-210ENST00000542033 DNAH3Q8TD57 4116 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 CHD8Q9HCK8 2581 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 DNAH7Q8WXX0 4024 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 SMR3AQ99954 134 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 ZFYVE26Q68DK2 2539 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 UNC79Q9P2D8 2635 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 HIVEP1P15822 2718 aa1.17□□□□□ -2.22
USP28-210ENST00000542033 RIF1Q5UIP0 2472 aaKnown RBP1.16□□□□□ -2.22
USP28-210ENST00000542033 ITPR3Q14573 2671 aa1.16□□□□□ -2.22
USP28-210ENST00000542033 NBEAL1Q6ZS30 2694 aa1.16□□□□□ -2.22
USP28-210ENST00000542033 ZANQ9Y493 2812 aa1.16□□□□□ -2.22
USP28-210ENST00000542033 KMT2AQ03164 3969 aa1.16□□□□□ -2.22
USP28-210ENST00000542033 MTORP42345 2549 aa1.16□□□□□ -2.22
USP28-210ENST00000542033 CMYA5Q8N3K9 4069 aa1.15□□□□□ -2.22
USP28-210ENST00000542033 DNAH9Q9NYC9 4486 aa1.15□□□□□ -2.23
USP28-210ENST00000542033 DNAH10Q8IVF4 4471 aa1.14□□□□□ -2.23
USP28-210ENST00000542033 LRRK2Q5S007 2527 aa1.14□□□□□ -2.23
USP28-210ENST00000542033 ABCA12Q86UK0 2595 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 DNAH6Q9C0G6 4158 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 DNAH8Q96JB1 4490 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 KRTAP4-1Q9BYQ7 146 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 HECTD4Q9Y4D8 3996 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 ITPR2Q14571 2701 aa1.13□□□□□ -2.23
USP28-210ENST00000542033 ZNF469Q96JG9 3925 aaPredicted RBP1.13□□□□□ -2.23
USP28-210ENST00000542033 DYNC2H1Q8NCM8 4307 aaKnown RBP1.13□□□□□ -2.23
USP28-210ENST00000542033 PRKDCP78527 4128 aaKnown RBP1.13□□□□□ -2.23
USP28-210ENST00000542033 ACACBO00763 2458 aa1.12□□□□□ -2.23
USP28-210ENST00000542033 SETD2Q9BYW2 2564 aaPredicted RBP1.12□□□□□ -2.23
USP28-210ENST00000542033 EPG5Q9HCE0 2579 aa1.12□□□□□ -2.23
USP28-210ENST00000542033 PKD1L2Q7Z442 2459 aa1.12□□□□□ -2.23
USP28-210ENST00000542033 TTC28Q96AY4 2481 aa1.12□□□□□ -2.23
USP28-210ENST00000542033 NSD1Q96L73 2696 aaPredicted RBP1.12□□□□□ -2.23
USP28-210ENST00000542033 ACANP16112 2415 aa1.11□□□□□ -2.23
USP28-210ENST00000542033 FLNCQ14315 2725 aa1.11□□□□□ -2.23
USP28-210ENST00000542033 DNAH17Q9UFH2 4485 aa1.11□□□□□ -2.23
USP28-210ENST00000542033 USP9YO00507 2555 aaPredicted RBP1.1□□□□□ -2.23
USP28-210ENST00000542033 TEP1Q99973 2627 aaKnown RBP1.1□□□□□ -2.23
USP28-210ENST00000542033 FBN3Q75N90 2809 aa1.1□□□□□ -2.23
USP28-210ENST00000542033 CACNA1AO00555 2505 aa1.1□□□□□ -2.23
USP28-210ENST00000542033 FASNP49327 2511 aaKnown RBP1.09□□□□□ -2.23
USP28-210ENST00000542033 MYO18BQ8IUG5 2567 aa1.09□□□□□ -2.24
USP28-210ENST00000542033 DNAH2Q9P225 4427 aa1.09□□□□□ -2.24
USP28-210ENST00000542033 DMBT1Q9UGM3 2413 aaPredicted RBP1.09□□□□□ -2.24
USP28-210ENST00000542033 MAST4O15021 2626 aa1.09□□□□□ -2.24
USP28-210ENST00000542033 IGSF10Q6WRI0 2623 aa1.09□□□□□ -2.24
USP28-210ENST00000542033 DNAH11Q96DT5 4516 aa1.08□□□□□ -2.24
USP28-210ENST00000542033 FLNAP21333 2647 aaKnown RBP1.08□□□□□ -2.24
USP28-210ENST00000542033 MYCBP2O75592 4640 aa1.08□□□□□ -2.24
USP28-210ENST00000542033 NOTCH1P46531 2555 aa1.08□□□□□ -2.24
USP28-210ENST00000542033 HUWE1Q7Z6Z7 4374 aaKnown RBP1.08□□□□□ -2.24
USP28-210ENST00000542033 ATRQ13535 2644 aa1.07□□□□□ -2.24
USP28-210ENST00000542033 POLQO75417 2590 aa1.06□□□□□ -2.24
USP28-210ENST00000542033 FLNBO75369 2602 aaKnown RBP1.05□□□□□ -2.24
USP28-210ENST00000542033 PKD1P98161 4303 aa1.05□□□□□ -2.24
USP28-210ENST00000542033 STAB2Q8WWQ8 2551 aa1.04□□□□□ -2.24
USP28-210ENST00000542033 USP24Q9UPU5 2620 aa1.04□□□□□ -2.24
USP28-210ENST00000542033 TENM3Q9P273 2699 aa1.04□□□□□ -2.24
USP28-210ENST00000542033 SMR3BP02814 79 aaPredicted RBP1.04□□□□□ -2.24
USP28-210ENST00000542033 KRTAP8-1Q8IUC2 63 aa1.03□□□□□ -2.24
USP28-210ENST00000542033 PKHD1P08F94 4074 aa1.03□□□□□ -2.24
USP28-210ENST00000542033 TENM1Q9UKZ4 2725 aa1.03□□□□□ -2.24
USP28-210ENST00000542033 PLECQ15149 4684 aaKnown RBP1.03□□□□□ -2.25
USP28-210ENST00000542033 STAB1Q9NY15 2570 aa1.02□□□□□ -2.25
USP28-210ENST00000542033 FCGBPQ9Y6R7 5405 aaPredicted RBP1.02□□□□□ -2.25
USP28-210ENST00000542033 VPS13BQ7Z7G8 4022 aa1.02□□□□□ -2.25
USP28-210ENST00000542033 MGAM2Q2M2H8 2515 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 M0R2T5 61 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 KRTAP2-3P0C7H8 128 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 KRTAP2-4Q9BYR9 128 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 KRTAP2-1Q9BYU5 128 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 SACSQ9NZJ4 4579 aa1.01□□□□□ -2.25
USP28-210ENST00000542033 FLGP20930 4061 aaPredicted RBP1.01□□□□□ -2.25
USP28-210ENST00000542033 FAT2Q9NYQ8 4349 aa1□□□□□ -2.25
USP28-210ENST00000542033 KRTAP10-4P60372 401 aaPredicted RBP0.99□□□□□ -2.25
USP28-210ENST00000542033 DNAH5Q8TE73 4624 aa0.99□□□□□ -2.25
USP28-210ENST00000542033 APOBP04114 4563 aaKnown RBP0.98□□□□□ -2.25
USP28-210ENST00000542033 LRP1Q07954 4544 aaKnown RBP0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms