RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 KRTAP17-1Q9BYP8 105 aa7.1□□□□□ -1.27
PTPN1-202ENST00000541713 KRTAP10-8P60410 259 aa7.1□□□□□ -1.27
PTPN1-202ENST00000541713 RYR1P21817 5038 aa7.09□□□□□ -1.28
PTPN1-202ENST00000541713 RPS29P62273 56 aaKnown RBP7.08□□□□□ -1.28
PTPN1-202ENST00000541713 COX6B2Q6YFQ2 88 aa7.08□□□□□ -1.28
PTPN1-202ENST00000541713 H1FX-AS1Q4G0G2 97 aa7.06□□□□□ -1.28
PTPN1-202ENST00000541713 LPAP08519 4548 aa7.05□□□□□ -1.28
PTPN1-202ENST00000541713 H3BS24 57 aa7.03□□□□□ -1.28
PTPN1-202ENST00000541713 LRP2P98164 4655 aa7.03□□□□□ -1.28
PTPN1-202ENST00000541713 XP32Q5T750 250 aa7□□□□□ -1.29
PTPN1-202ENST00000541713 A0A0A0MQY5 61 aa6.98□□□□□ -1.29
PTPN1-202ENST00000541713 LINC01554Q52M75 96 aa6.98□□□□□ -1.29
PTPN1-202ENST00000541713 EPPK1P58107 5090 aaKnown RBP6.96□□□□□ -1.3
PTPN1-202ENST00000541713 P0C880 135 aa6.94□□□□□ -1.3
PTPN1-202ENST00000541713 KRTAP21-3Q3LHN1 58 aa6.94□□□□□ -1.3
PTPN1-202ENST00000541713 TNXBP22105 4242 aa6.94□□□□□ -1.3
PTPN1-202ENST00000541713 K7ERS5 55 aa6.93□□□□□ -1.3
PTPN1-202ENST00000541713 RPL37P61927 97 aaKnown RBP6.93□□□□□ -1.3
PTPN1-202ENST00000541713 S4R3F8 94 aa6.93□□□□□ -1.3
PTPN1-202ENST00000541713 ABCA13Q86UQ4 5058 aa6.93□□□□□ -1.3
PTPN1-202ENST00000541713 KRTAP13-4Q3LI77 160 aa6.92□□□□□ -1.3
PTPN1-202ENST00000541713 SPINT4Q6UDR6 99 aa6.9□□□□□ -1.3
PTPN1-202ENST00000541713 KRTAP3-3Q9BYR6 98 aa6.88□□□□□ -1.31
PTPN1-202ENST00000541713 KRTAP4-5Q9BYR2 181 aa6.86□□□□□ -1.31
PTPN1-202ENST00000541713 KRTAP10-6P60371 365 aaPredicted RBP6.84□□□□□ -1.31
PTPN1-202ENST00000541713 C10orf95Q9H7T3 257 aa6.83□□□□□ -1.32
PTPN1-202ENST00000541713 MT1HL1P0DM35 61 aa6.82□□□□□ -1.32
PTPN1-202ENST00000541713 MUC2Q02817 5179 aa6.79□□□□□ -1.32
PTPN1-202ENST00000541713 KRTAP25-1Q3LHN0 102 aa6.77□□□□□ -1.33
PTPN1-202ENST00000541713 KRTAP3-2Q9BYR7 98 aa6.77□□□□□ -1.33
PTPN1-202ENST00000541713 ROMO1P60602 79 aa6.7□□□□□ -1.34
PTPN1-202ENST00000541713 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
PTPN1-202ENST00000541713 M0QZ58 72 aa6.63□□□□□ -1.35
PTPN1-202ENST00000541713 TPRXLQ17RH7 258 aa6.62□□□□□ -1.35
PTPN1-202ENST00000541713 LCE2DQ5TA82 110 aaPredicted RBP6.61□□□□□ -1.35
PTPN1-202ENST00000541713 HERC2O95714 4834 aa6.58□□□□□ -1.36
PTPN1-202ENST00000541713 R4GN34 69 aa6.57□□□□□ -1.36
PTPN1-202ENST00000541713 KRTAP12-1P59990 96 aa6.54□□□□□ -1.36
PTPN1-202ENST00000541713 LORP23490 312 aaPredicted RBP6.53□□□□□ -1.36
PTPN1-202ENST00000541713 KRTAP4-1Q9BYQ7 146 aa6.51□□□□□ -1.37
PTPN1-202ENST00000541713 HERC1Q15751 4861 aa6.47□□□□□ -1.37
PTPN1-202ENST00000541713 SEC61BP60468 96 aaKnown RBP6.44□□□□□ -1.38
PTPN1-202ENST00000541713 FAT4Q6V0I7 4981 aa6.42□□□□□ -1.38
PTPN1-202ENST00000541713 RNF213Q63HN8 5207 aa6.41□□□□□ -1.38
PTPN1-202ENST00000541713 CAMK2N1Q7Z7J9 78 aa6.34□□□□□ -1.4
PTPN1-202ENST00000541713 NDUFAF8A1L188 74 aa6.31□□□□□ -1.4
PTPN1-202ENST00000541713 PCLOQ9Y6V0 5065 aa6.29□□□□□ -1.4
PTPN1-202ENST00000541713 MUC17Q685J3 4493 aa6.29□□□□□ -1.4
PTPN1-202ENST00000541713 M0R2T5 61 aa6.2□□□□□ -1.42
PTPN1-202ENST00000541713 UBR4Q5T4S7 5183 aa6.19□□□□□ -1.42
PTPN1-202ENST00000541713 KRTAP15-1Q3LI76 137 aa6.09□□□□□ -1.43
PTPN1-202ENST00000541713 BIRC6Q9NR09 4857 aa6.08□□□□□ -1.44
PTPN1-202ENST00000541713 HMCN2Q8NDA2 5059 aa6.07□□□□□ -1.44
PTPN1-202ENST00000541713 KRTAP19-2Q3LHN2 52 aa6.06□□□□□ -1.44
PTPN1-202ENST00000541713 PLAC4Q8WY50 150 aa6.01□□□□□ -1.45
PTPN1-202ENST00000541713 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
PTPN1-202ENST00000541713 KRTAP10-10P60014 251 aa5.89□□□□□ -1.47
PTPN1-202ENST00000541713 LCE2BO14633 110 aa5.89□□□□□ -1.47
PTPN1-202ENST00000541713 TNP1P09430 55 aa5.87□□□□□ -1.47
PTPN1-202ENST00000541713 LCE2CQ5TA81 110 aa5.83□□□□□ -1.48
PTPN1-202ENST00000541713 LUZP6Q538Z0 58 aa5.8□□□□□ -1.48
PTPN1-202ENST00000541713 USH2AO75445 5202 aa5.76□□□□□ -1.49
PTPN1-202ENST00000541713 MT1HP80294 61 aa5.73□□□□□ -1.49
PTPN1-202ENST00000541713 KRTAP19-1Q8IUB9 90 aa5.72□□□□□ -1.49
PTPN1-202ENST00000541713 MT1FP04733 61 aa5.72□□□□□ -1.49
PTPN1-202ENST00000541713 LCE2AQ5TA79 106 aaPredicted RBP5.71□□□□□ -1.49
PTPN1-202ENST00000541713 PP632Q6XCG6 107 aa5.7□□□□□ -1.5
PTPN1-202ENST00000541713 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
PTPN1-202ENST00000541713 MT2AP02795 61 aa5.66□□□□□ -1.5
PTPN1-202ENST00000541713 LCE3AQ5TA76 89 aa5.64□□□□□ -1.51
PTPN1-202ENST00000541713 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
PTPN1-202ENST00000541713 KMT2DO14686 5537 aa5.61□□□□□ -1.51
PTPN1-202ENST00000541713 SPRR2GQ9BYE4 73 aa5.58□□□□□ -1.52
PTPN1-202ENST00000541713 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
PTPN1-202ENST00000541713 MT1BP07438 61 aa5.42□□□□□ -1.54
PTPN1-202ENST00000541713 KRTAP10-7P60409 375 aaPredicted RBP5.4□□□□□ -1.54
PTPN1-202ENST00000541713 KRTAP10-5P60370 271 aa5.39□□□□□ -1.55
PTPN1-202ENST00000541713 MT1XP80297 61 aa5.39□□□□□ -1.55
PTPN1-202ENST00000541713 KRTAP10-12P60413 245 aa5.35□□□□□ -1.55
PTPN1-202ENST00000541713 KRTAP12-3P60328 96 aa5.31□□□□□ -1.56
PTPN1-202ENST00000541713 KRTAP9-3Q9BYQ3 159 aa5.28□□□□□ -1.56
PTPN1-202ENST00000541713 KRTAP19-8Q3LI54 63 aa5.28□□□□□ -1.56
PTPN1-202ENST00000541713 KRTAP4-8A0A0G2JLE6 195 aa5.24□□□□□ -1.57
PTPN1-202ENST00000541713 KRTAP4-8Q9BYQ9 185 aa5.24□□□□□ -1.57
PTPN1-202ENST00000541713 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
PTPN1-202ENST00000541713 SPRR5A0A1B0GTR4 108 aa5.2□□□□□ -1.58
PTPN1-202ENST00000541713 PRO2289Q9P1D8 64 aa5.17□□□□□ -1.58
PTPN1-202ENST00000541713 KRTAP19-5Q3LI72 72 aa5.15□□□□□ -1.58
PTPN1-202ENST00000541713 KRTAP4-7Q9BYR0 210 aa5.07□□□□□ -1.6
PTPN1-202ENST00000541713 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
PTPN1-202ENST00000541713 SSPOA2VEC9 5147 aa4.98□□□□□ -1.61
PTPN1-202ENST00000541713 MUC12Q9UKN1 5478 aa4.96□□□□□ -1.62
PTPN1-202ENST00000541713 FCGBPQ9Y6R7 5405 aaPredicted RBP4.91□□□□□ -1.62
PTPN1-202ENST00000541713 LCE3CQ5T5A8 94 aa4.91□□□□□ -1.62
PTPN1-202ENST00000541713 CRCT1Q9UGL9 99 aa4.87□□□□□ -1.63
PTPN1-202ENST00000541713 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
PTPN1-202ENST00000541713 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
PTPN1-202ENST00000541713 SYNE1Q8NF91 8797 aaKnown RBP4.82□□□□□ -1.64
PTPN1-202ENST00000541713 KRTAP19-7Q3SYF9 63 aa4.78□□□□□ -1.64
PTPN1-202ENST00000541713 INE1O15225 51 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms