RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 NMSQ5H8A3 153 aa-0.14□□□□□ -2.43
PRKDC-210ENST00000541488 RPL13AP3Q6NVV1 102 aa-0.14□□□□□ -2.43
PRKDC-210ENST00000541488 CCDC167Q9P0B6 97 aa-0.14□□□□□ -2.43
PRKDC-210ENST00000541488 A0A0G2JND7 137 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 F8VRH5 84 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 M0QY20 66 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 SIX6O95475 246 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 SELENOWP63302 87 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 RPL39LQ96EH5 51 aaKnown RBP-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 FXYD6Q9H0Q3 95 aa-0.15□□□□□ -2.43
PRKDC-210ENST00000541488 A0A087WXM4 84 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 PIGBOS1A0A0B4J2F0 54 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 SSSCA1O60232 199 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 ARPC4P59998 168 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 SMCO1Q147U7 214 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 C10orf113Q5VZT2 155 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 Q8IZM0 81 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 SPTSSBQ8NFR3 76 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 PFDN5Q99471 154 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 NMES1Q9C002 83 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 KCNQ1DNQ9H478 68 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 LENEPQ9Y5L5 61 aa-0.16□□□□□ -2.44
PRKDC-210ENST00000541488 C7orf77A4D0Y5 90 aa-0.17□□□□□ -2.44
PRKDC-210ENST00000541488 SEC11CQ9BY50 192 aa-0.17□□□□□ -2.44
PRKDC-210ENST00000541488 FAM107BQ9H098 131 aa-0.17□□□□□ -2.44
PRKDC-210ENST00000541488 LOC105371267A0A1B0GV96 52 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 C3orf79P0CE67 100 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 HIST1H1DP16402 221 aaKnown RBP-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 RPL39P62891 51 aaKnown RBP-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 S100A7L2Q5SY68 101 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 COPS9Q8WXC6 57 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 SMIM2Q9BVW6 85 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 SPCS1Q9Y6A9 102 aa-0.18□□□□□ -2.44
PRKDC-210ENST00000541488 I3L3M4 83 aa-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 POLR2KP53803 58 aaKnown RBP-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 UBE2L3P68036 154 aaKnown RBP-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 S100A12P80511 92 aa-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 C12orf73Q69YU5 71 aa-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 SMIM4Q8WVI0 70 aa-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 MGST2Q99735 147 aa-0.19□□□□□ -2.44
PRKDC-210ENST00000541488 TRAV13-2A0A0B4J235 113 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 TRAV22A0A0B4J277 110 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 HCG22E2RYF7 251 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 H3BUT2 72 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 PPP1R17O96001 155 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 FCER1GP30273 86 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 SMIM11AP58511 58 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 GNG2P59768 71 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 FAM167A-AS1Q96KT0 104 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 NXT2Q9NPJ8 142 aaKnown RBP-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 CDKN2A-AS1Q9UH64 79 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 AP4S1Q9Y587 144 aa-0.2□□□□□ -2.44
PRKDC-210ENST00000541488 UBE2L5PA0A1B0GUS4 154 aa-0.21□□□□□ -2.44
PRKDC-210ENST00000541488 PDCD5O14737 125 aa-0.21□□□□□ -2.44
PRKDC-210ENST00000541488 NDUFC1O43677 76 aa-0.21□□□□□ -2.44
PRKDC-210ENST00000541488 HMGN1P05114 100 aa-0.21□□□□□ -2.44
PRKDC-210ENST00000541488 TNP1P09430 55 aa-0.21□□□□□ -2.44
PRKDC-210ENST00000541488 LINC00158P58513 81 aa-0.22□□□□□ -2.44
PRKDC-210ENST00000541488 Q6JHZ5 121 aa-0.22□□□□□ -2.44
PRKDC-210ENST00000541488 ACBD7Q8N6N7 88 aa-0.22□□□□□ -2.44
PRKDC-210ENST00000541488 COX17Q14061 63 aa-0.23□□□□□ -2.45
PRKDC-210ENST00000541488 C2orf88Q9BSF0 95 aa-0.23□□□□□ -2.45
PRKDC-210ENST00000541488 ST20Q9HBF5 79 aa-0.23□□□□□ -2.45
PRKDC-210ENST00000541488 CTXND1A0A1B0GTU2 59 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 SMIM13P0DJ93 91 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 COX7BP24311 80 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 IFI27P40305 119 aaPredicted RBP-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 CCDC58Q4VC31 144 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 MUSTN1Q8IVN3 82 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 Q8N8P6 123 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 PSENENQ9NZ42 101 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 SERP1Q9Y6X1 66 aa-0.24□□□□□ -2.45
PRKDC-210ENST00000541488 MEIG1Q5JSS6 88 aa-0.25□□□□□ -2.45
PRKDC-210ENST00000541488 TP53AIP1Q9HCN2 124 aa-0.25□□□□□ -2.45
PRKDC-210ENST00000541488 V9GYH0 126 aa-0.25□□□□□ -2.45
PRKDC-210ENST00000541488 GNGT2O14610 69 aa-0.26□□□□□ -2.45
PRKDC-210ENST00000541488 MRPL34Q9BQ48 92 aaKnown RBP-0.26□□□□□ -2.45
PRKDC-210ENST00000541488 TRBV7-4A0A0J9YYF1 115 aa-0.27□□□□□ -2.45
PRKDC-210ENST00000541488 MMP24-AS1A0A0U1RRL7 71 aa-0.27□□□□□ -2.45
PRKDC-210ENST00000541488 TMEM170BQ5T4T1 132 aa-0.27□□□□□ -2.45
PRKDC-210ENST00000541488 CACFD1Q9UGQ2 172 aa-0.27□□□□□ -2.45
PRKDC-210ENST00000541488 FAM25AB3EWG3 89 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 FAM25CB3EWG5 89 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 FAM25GB3EWG6 89 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 UQCR11O14957 56 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 SFT2D2O95562 160 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 APOC3P02656 99 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 PRM1P04553 51 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 SEC11AP67812 179 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 MRPS10P82664 201 aaKnown RBP-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 BAGE2Q86Y30 109 aa-0.28□□□□□ -2.45
PRKDC-210ENST00000541488 hADV29S1A0JD25 119 aa-0.29□□□□□ -2.46
PRKDC-210ENST00000541488 NDUFB1O75438 58 aa-0.3□□□□□ -2.46
PRKDC-210ENST00000541488 SNHG12Q9BXW3 62 aa-0.3□□□□□ -2.46
PRKDC-210ENST00000541488 EFCAB10A6NFE3 127 aa-0.31□□□□□ -2.46
PRKDC-210ENST00000541488 IGIPA6NJ69 53 aa-0.31□□□□□ -2.46
PRKDC-210ENST00000541488 ACYP1P07311 99 aa-0.31□□□□□ -2.46
PRKDC-210ENST00000541488 S100PP25815 95 aa-0.31□□□□□ -2.46
PRKDC-210ENST00000541488 SFTA2Q6UW10 78 aa-0.31□□□□□ -2.46
PRKDC-210ENST00000541488 C8orf59Q8N0T1 100 aaPredicted RBP-0.31□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms