RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 KRTAP10-8P60410 259 aa6.65□□□□□ -1.34
RNF4-222ENST00000541204 FAT3Q8TDW7 4589 aa6.65□□□□□ -1.34
RNF4-222ENST00000541204 LINC01554Q52M75 96 aa6.65□□□□□ -1.35
RNF4-222ENST00000541204 EPPK1P58107 5090 aaKnown RBP6.63□□□□□ -1.35
RNF4-222ENST00000541204 A0A1B0GU33 70 aa6.62□□□□□ -1.35
RNF4-222ENST00000541204 H1FX-AS1Q4G0G2 97 aa6.59□□□□□ -1.35
RNF4-222ENST00000541204 COX6B2Q6YFQ2 88 aa6.55□□□□□ -1.36
RNF4-222ENST00000541204 MT1HL1P0DM35 61 aa6.52□□□□□ -1.37
RNF4-222ENST00000541204 XP32Q5T750 250 aa6.5□□□□□ -1.37
RNF4-222ENST00000541204 RPL37P61927 97 aaKnown RBP6.47□□□□□ -1.37
RNF4-222ENST00000541204 KRTAP4-5Q9BYR2 181 aa6.46□□□□□ -1.38
RNF4-222ENST00000541204 KRTAP25-1Q3LHN0 102 aa6.44□□□□□ -1.38
RNF4-222ENST00000541204 J3QL48 77 aa6.43□□□□□ -1.38
RNF4-222ENST00000541204 ABCA13Q86UQ4 5058 aa6.42□□□□□ -1.38
RNF4-222ENST00000541204 KRTAP3-3Q9BYR6 98 aa6.41□□□□□ -1.38
RNF4-222ENST00000541204 H3BS24 57 aa6.41□□□□□ -1.38
RNF4-222ENST00000541204 K7ERS5 55 aa6.41□□□□□ -1.38
RNF4-222ENST00000541204 LPAP08519 4548 aa6.4□□□□□ -1.38
RNF4-222ENST00000541204 CRIPTQ9P021 101 aa6.4□□□□□ -1.38
RNF4-222ENST00000541204 LRP2P98164 4655 aa6.39□□□□□ -1.39
RNF4-222ENST00000541204 KRTAP10-6P60371 365 aaPredicted RBP6.39□□□□□ -1.39
RNF4-222ENST00000541204 KRTAP13-4Q3LI77 160 aa6.36□□□□□ -1.39
RNF4-222ENST00000541204 A0A0A0MQY5 61 aa6.35□□□□□ -1.39
RNF4-222ENST00000541204 A0A0D9SG42 100 aa6.34□□□□□ -1.4
RNF4-222ENST00000541204 KRTAP3-2Q9BYR7 98 aa6.33□□□□□ -1.4
RNF4-222ENST00000541204 S4R3F8 94 aa6.33□□□□□ -1.4
RNF4-222ENST00000541204 ROMO1P60602 79 aa6.3□□□□□ -1.4
RNF4-222ENST00000541204 TPRXLQ17RH7 258 aa6.28□□□□□ -1.4
RNF4-222ENST00000541204 P0C880 135 aa6.27□□□□□ -1.41
RNF4-222ENST00000541204 HERC2O95714 4834 aa6.22□□□□□ -1.41
RNF4-222ENST00000541204 KRTAP12-2P59991 146 aa6.16□□□□□ -1.42
RNF4-222ENST00000541204 C10orf95Q9H7T3 257 aa6.14□□□□□ -1.43
RNF4-222ENST00000541204 SPINT4Q6UDR6 99 aa6.11□□□□□ -1.43
RNF4-222ENST00000541204 KRTAP12-1P59990 96 aa6.09□□□□□ -1.43
RNF4-222ENST00000541204 SEC61BP60468 96 aaKnown RBP6.07□□□□□ -1.44
RNF4-222ENST00000541204 BIRC6Q9NR09 4857 aa6.07□□□□□ -1.44
RNF4-222ENST00000541204 MUC2Q02817 5179 aa6.06□□□□□ -1.44
RNF4-222ENST00000541204 KRTAP4-1Q9BYQ7 146 aa6.06□□□□□ -1.44
RNF4-222ENST00000541204 M0QZ58 72 aa6.01□□□□□ -1.45
RNF4-222ENST00000541204 PCLOQ9Y6V0 5065 aa6.01□□□□□ -1.45
RNF4-222ENST00000541204 MUC17Q685J3 4493 aa6.01□□□□□ -1.45
RNF4-222ENST00000541204 HERC1Q15751 4861 aa6.01□□□□□ -1.45
RNF4-222ENST00000541204 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.47
RNF4-222ENST00000541204 R4GN34 69 aa5.89□□□□□ -1.47
RNF4-222ENST00000541204 HMCN2Q8NDA2 5059 aa5.84□□□□□ -1.47
RNF4-222ENST00000541204 LORP23490 312 aaPredicted RBP5.84□□□□□ -1.47
RNF4-222ENST00000541204 KRTAP19-2Q3LHN2 52 aa5.84□□□□□ -1.47
RNF4-222ENST00000541204 NDUFAF8A1L188 74 aa5.81□□□□□ -1.48
RNF4-222ENST00000541204 FAT4Q6V0I7 4981 aa5.76□□□□□ -1.49
RNF4-222ENST00000541204 RNF213Q63HN8 5207 aa5.74□□□□□ -1.49
RNF4-222ENST00000541204 UBR4Q5T4S7 5183 aa5.72□□□□□ -1.49
RNF4-222ENST00000541204 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
RNF4-222ENST00000541204 FLGP20930 4061 aaPredicted RBP5.68□□□□□ -1.5
RNF4-222ENST00000541204 PLAC4Q8WY50 150 aa5.61□□□□□ -1.51
RNF4-222ENST00000541204 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
RNF4-222ENST00000541204 LCE2CQ5TA81 110 aa5.6□□□□□ -1.51
RNF4-222ENST00000541204 M0R2T5 61 aa5.57□□□□□ -1.52
RNF4-222ENST00000541204 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
RNF4-222ENST00000541204 MT1HP80294 61 aa5.48□□□□□ -1.53
RNF4-222ENST00000541204 TNP1P09430 55 aa5.38□□□□□ -1.55
RNF4-222ENST00000541204 KRTAP10-10P60014 251 aa5.38□□□□□ -1.55
RNF4-222ENST00000541204 MT1FP04733 61 aa5.36□□□□□ -1.55
RNF4-222ENST00000541204 LUZP6Q538Z0 58 aa5.36□□□□□ -1.55
RNF4-222ENST00000541204 KRTAP19-1Q8IUB9 90 aa5.36□□□□□ -1.55
RNF4-222ENST00000541204 MT2AP02795 61 aa5.35□□□□□ -1.55
RNF4-222ENST00000541204 SPRR2GQ9BYE4 73 aa5.33□□□□□ -1.56
RNF4-222ENST00000541204 KRTAP9-8Q9BYQ0 159 aa5.31□□□□□ -1.56
RNF4-222ENST00000541204 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
RNF4-222ENST00000541204 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
RNF4-222ENST00000541204 LCE3AQ5TA76 89 aa5.12□□□□□ -1.59
RNF4-222ENST00000541204 MT1BP07438 61 aa5.1□□□□□ -1.59
RNF4-222ENST00000541204 KRTAP19-8Q3LI54 63 aa5.1□□□□□ -1.59
RNF4-222ENST00000541204 KRTAP9-3Q9BYQ3 159 aa5.09□□□□□ -1.6
RNF4-222ENST00000541204 USH2AO75445 5202 aa5.05□□□□□ -1.6
RNF4-222ENST00000541204 KRTAP10-5P60370 271 aa5.03□□□□□ -1.6
RNF4-222ENST00000541204 MT1XP80297 61 aa5.03□□□□□ -1.6
RNF4-222ENST00000541204 LCE2BO14633 110 aa4.95□□□□□ -1.62
RNF4-222ENST00000541204 KRTAP8-1Q8IUC2 63 aa4.95□□□□□ -1.62
RNF4-222ENST00000541204 LCE2AQ5TA79 106 aaPredicted RBP4.94□□□□□ -1.62
RNF4-222ENST00000541204 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
RNF4-222ENST00000541204 KRTAP10-12P60413 245 aa4.88□□□□□ -1.63
RNF4-222ENST00000541204 KRTAP12-3P60328 96 aa4.86□□□□□ -1.63
RNF4-222ENST00000541204 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
RNF4-222ENST00000541204 KMT2DO14686 5537 aa4.84□□□□□ -1.64
RNF4-222ENST00000541204 FSIP2Q5CZC0 6907 aa4.82□□□□□ -1.64
RNF4-222ENST00000541204 KRTAP4-8A0A0G2JLE6 195 aa4.7□□□□□ -1.66
RNF4-222ENST00000541204 KRTAP4-8Q9BYQ9 185 aa4.7□□□□□ -1.66
RNF4-222ENST00000541204 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
RNF4-222ENST00000541204 SSPOA2VEC9 5147 aa4.64□□□□□ -1.67
RNF4-222ENST00000541204 INE1O15225 51 aa4.6□□□□□ -1.67
RNF4-222ENST00000541204 LCE3CQ5T5A8 94 aa4.58□□□□□ -1.68
RNF4-222ENST00000541204 KRTAP19-7Q3SYF9 63 aa4.48□□□□□ -1.69
RNF4-222ENST00000541204 KRTAP9-6A8MVA2 160 aa4.45□□□□□ -1.7
RNF4-222ENST00000541204 KRTAP19-6Q3LI70 58 aa4.43□□□□□ -1.7
RNF4-222ENST00000541204 KRTAP4-7Q9BYR0 210 aa4.43□□□□□ -1.7
RNF4-222ENST00000541204 FCGBPQ9Y6R7 5405 aaPredicted RBP4.37□□□□□ -1.71
RNF4-222ENST00000541204 MT1EP04732 61 aa4.36□□□□□ -1.71
RNF4-222ENST00000541204 MT1LQ93083 61 aa4.33□□□□□ -1.72
RNF4-222ENST00000541204 MUC12Q9UKN1 5478 aa4.32□□□□□ -1.72
RNF4-222ENST00000541204 KRTAP2-3P0C7H8 128 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms