RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 AKAP9Q99996 3911 aa3.48□□□□□ -1.85
YBX3-208ENST00000540447 MT1HL1P0DM35 61 aa3.42□□□□□ -1.86
YBX3-208ENST00000540447 CSMD3Q7Z407 3707 aa3.4□□□□□ -1.87
YBX3-208ENST00000540447 DNHD1Q96M86 4753 aa3.39□□□□□ -1.87
YBX3-208ENST00000540447 SPRR5A0A1B0GTR4 108 aa3.35□□□□□ -1.87
YBX3-208ENST00000540447 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
YBX3-208ENST00000540447 KRTAP10-4P60372 401 aaPredicted RBP3.34□□□□□ -1.88
YBX3-208ENST00000540447 KRTAP8-1Q8IUC2 63 aa3.3□□□□□ -1.88
YBX3-208ENST00000540447 KRTAP4-5Q9BYR2 181 aa3.29□□□□□ -1.88
YBX3-208ENST00000540447 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
YBX3-208ENST00000540447 KRTAP19-5Q3LI72 72 aa3.25□□□□□ -1.89
YBX3-208ENST00000540447 SPRR2GQ9BYE4 73 aa3.21□□□□□ -1.9
YBX3-208ENST00000540447 HUWE1Q7Z6Z7 4374 aaKnown RBP3.2□□□□□ -1.9
YBX3-208ENST00000540447 PRKDCP78527 4128 aaKnown RBP3.19□□□□□ -1.9
YBX3-208ENST00000540447 DNAH8Q96JB1 4490 aa3.18□□□□□ -1.9
YBX3-208ENST00000540447 DNAH1Q9P2D7 4330 aa3.18□□□□□ -1.9
YBX3-208ENST00000540447 DNAH11Q96DT5 4516 aa3.17□□□□□ -1.9
YBX3-208ENST00000540447 ANK2Q01484 3957 aa3.16□□□□□ -1.9
YBX3-208ENST00000540447 KRTAP19-4Q3LI73 84 aa3.16□□□□□ -1.9
YBX3-208ENST00000540447 DNAH10Q8IVF4 4471 aa3.12□□□□□ -1.91
YBX3-208ENST00000540447 DNAH9Q9NYC9 4486 aa3.11□□□□□ -1.91
YBX3-208ENST00000540447 DNAH2Q9P225 4427 aa3.11□□□□□ -1.91
YBX3-208ENST00000540447 DNAH3Q8TD57 4116 aa3.11□□□□□ -1.91
YBX3-208ENST00000540447 KRTAP4-1Q9BYQ7 146 aa3.1□□□□□ -1.91
YBX3-208ENST00000540447 CMYA5Q8N3K9 4069 aa3.09□□□□□ -1.92
YBX3-208ENST00000540447 PLECQ15149 4684 aaKnown RBP3.09□□□□□ -1.92
YBX3-208ENST00000540447 LYSTQ99698 3801 aa3.08□□□□□ -1.92
YBX3-208ENST00000540447 DNAH6Q9C0G6 4158 aa3.07□□□□□ -1.92
YBX3-208ENST00000540447 STARD9Q9P2P6 4700 aa3.07□□□□□ -1.92
YBX3-208ENST00000540447 LCE3BQ5TA77 95 aa3.07□□□□□ -1.92
YBX3-208ENST00000540447 MT2AP02795 61 aa3.05□□□□□ -1.92
YBX3-208ENST00000540447 FAT1Q14517 4588 aa3.05□□□□□ -1.92
YBX3-208ENST00000540447 KRTAP10-7P60409 375 aaPredicted RBP3.05□□□□□ -1.92
YBX3-208ENST00000540447 DYNC2H1Q8NCM8 4307 aaKnown RBP3.04□□□□□ -1.92
YBX3-208ENST00000540447 KMT2AQ03164 3969 aa3.02□□□□□ -1.93
YBX3-208ENST00000540447 DNAH17Q9UFH2 4485 aa3.01□□□□□ -1.93
YBX3-208ENST00000540447 HYDINQ4G0P3 5121 aa3.01□□□□□ -1.93
YBX3-208ENST00000540447 VPS13DQ5THJ4 4388 aa3.01□□□□□ -1.93
YBX3-208ENST00000540447 LCE2DQ5TA82 110 aaPredicted RBP3□□□□□ -1.93
YBX3-208ENST00000540447 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
YBX3-208ENST00000540447 KMT2CQ8NEZ4 4911 aaKnown RBP3□□□□□ -1.93
YBX3-208ENST00000540447 MT1HP80294 61 aa2.99□□□□□ -1.93
YBX3-208ENST00000540447 MT1FP04733 61 aa2.99□□□□□ -1.93
YBX3-208ENST00000540447 LCE3EQ5T5B0 92 aa2.98□□□□□ -1.93
YBX3-208ENST00000540447 KIAA1109Q2LD37 5005 aa2.98□□□□□ -1.93
YBX3-208ENST00000540447 DNAH7Q8WXX0 4024 aa2.95□□□□□ -1.94
YBX3-208ENST00000540447 HECTD4Q9Y4D8 3996 aa2.95□□□□□ -1.94
YBX3-208ENST00000540447 DNAH5Q8TE73 4624 aa2.95□□□□□ -1.94
YBX3-208ENST00000540447 MT1GP13640 62 aa2.94□□□□□ -1.94
YBX3-208ENST00000540447 FRAS1Q86XX4 4008 aa2.93□□□□□ -1.94
YBX3-208ENST00000540447 RYR1P21817 5038 aa2.93□□□□□ -1.94
YBX3-208ENST00000540447 RYR3Q15413 4870 aa2.92□□□□□ -1.94
YBX3-208ENST00000540447 PRM1P04553 51 aa2.92□□□□□ -1.94
YBX3-208ENST00000540447 KRTAP19-1Q8IUB9 90 aa2.91□□□□□ -1.94
YBX3-208ENST00000540447 MT1XP80297 61 aa2.9□□□□□ -1.94
YBX3-208ENST00000540447 KRTAP19-8Q3LI54 63 aa2.89□□□□□ -1.95
YBX3-208ENST00000540447 SPRR2FQ96RM1 72 aa2.89□□□□□ -1.95
YBX3-208ENST00000540447 DYNC1H1Q14204 4646 aaKnown RBP2.89□□□□□ -1.95
YBX3-208ENST00000540447 SACSQ9NZJ4 4579 aa2.88□□□□□ -1.95
YBX3-208ENST00000540447 LRP1BQ9NZR2 4599 aa2.88□□□□□ -1.95
YBX3-208ENST00000540447 PKHD1P08F94 4074 aa2.88□□□□□ -1.95
YBX3-208ENST00000540447 MYCBP2O75592 4640 aa2.87□□□□□ -1.95
YBX3-208ENST00000540447 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
YBX3-208ENST00000540447 APOBP04114 4563 aaKnown RBP2.86□□□□□ -1.95
YBX3-208ENST00000540447 EPPK1P58107 5090 aaKnown RBP2.86□□□□□ -1.95
YBX3-208ENST00000540447 VPS13BQ7Z7G8 4022 aa2.85□□□□□ -1.95
YBX3-208ENST00000540447 RYR2Q92736 4967 aa2.84□□□□□ -1.95
YBX3-208ENST00000540447 LRP1Q07954 4544 aaKnown RBP2.83□□□□□ -1.96
YBX3-208ENST00000540447 MT3P25713 68 aa2.79□□□□□ -1.96
YBX3-208ENST00000540447 KRTAP17-1Q9BYP8 105 aa2.79□□□□□ -1.96
YBX3-208ENST00000540447 FAT2Q9NYQ8 4349 aa2.79□□□□□ -1.96
YBX3-208ENST00000540447 HERC2O95714 4834 aa2.78□□□□□ -1.97
YBX3-208ENST00000540447 MT1BP07438 61 aa2.77□□□□□ -1.97
YBX3-208ENST00000540447 PKHD1L1Q86WI1 4243 aa2.77□□□□□ -1.97
YBX3-208ENST00000540447 KRTAP4-8A0A0G2JLE6 195 aa2.76□□□□□ -1.97
YBX3-208ENST00000540447 KRTAP4-8Q9BYQ9 185 aa2.76□□□□□ -1.97
YBX3-208ENST00000540447 KRTAP4-7Q9BYR0 210 aa2.76□□□□□ -1.97
YBX3-208ENST00000540447 PKD1P98161 4303 aa2.75□□□□□ -1.97
YBX3-208ENST00000540447 SPRR2EP22531 72 aa2.74□□□□□ -1.97
YBX3-208ENST00000540447 SPRR2BP35325 72 aa2.74□□□□□ -1.97
YBX3-208ENST00000540447 SPRR2AP35326 72 aa2.74□□□□□ -1.97
YBX3-208ENST00000540447 PCLOQ9Y6V0 5065 aa2.73□□□□□ -1.97
YBX3-208ENST00000540447 MT1LQ93083 61 aa2.72□□□□□ -1.97
YBX3-208ENST00000540447 HSPG2P98160 4391 aa2.72□□□□□ -1.97
YBX3-208ENST00000540447 ABCA13Q86UQ4 5058 aa2.71□□□□□ -1.98
YBX3-208ENST00000540447 LRP2P98164 4655 aa2.7□□□□□ -1.98
YBX3-208ENST00000540447 BIRC6Q9NR09 4857 aa2.68□□□□□ -1.98
YBX3-208ENST00000540447 KRTAP2-3P0C7H8 128 aa2.68□□□□□ -1.98
YBX3-208ENST00000540447 KRTAP2-4Q9BYR9 128 aa2.68□□□□□ -1.98
YBX3-208ENST00000540447 KRTAP2-1Q9BYU5 128 aa2.68□□□□□ -1.98
YBX3-208ENST00000540447 HERC1Q15751 4861 aa2.68□□□□□ -1.98
YBX3-208ENST00000540447 RNF213Q63HN8 5207 aa2.65□□□□□ -1.98
YBX3-208ENST00000540447 SPRR2DP22532 72 aa2.65□□□□□ -1.99
YBX3-208ENST00000540447 LPAP08519 4548 aa2.63□□□□□ -1.99
YBX3-208ENST00000540447 UBR4Q5T4S7 5183 aa2.62□□□□□ -1.99
YBX3-208ENST00000540447 MUC2Q02817 5179 aa2.61□□□□□ -1.99
YBX3-208ENST00000540447 FSIP2Q5CZC0 6907 aa2.6□□□□□ -1.99
YBX3-208ENST00000540447 KRTAP9-8Q9BYQ0 159 aa2.6□□□□□ -1.99
YBX3-208ENST00000540447 MT1EP04732 61 aa2.6□□□□□ -1.99
YBX3-208ENST00000540447 KRTAP19-3Q7Z4W3 81 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms