RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	AKAP9	Q99996	3911 aa		3.48	□□□□□ -1.85
YBX3-208	ENST00000540447	MT1HL1	P0DM35	61 aa		3.42	□□□□□ -1.86
YBX3-208	ENST00000540447	CSMD3	Q7Z407	3707 aa		3.4	□□□□□ -1.87
YBX3-208	ENST00000540447	DNHD1	Q96M86	4753 aa		3.39	□□□□□ -1.87
YBX3-208	ENST00000540447	SPRR5	A0A1B0GTR4	108 aa		3.35	□□□□□ -1.87
YBX3-208	ENST00000540447	LCE3C	Q5T5A8	94 aa		3.35	□□□□□ -1.87
YBX3-208	ENST00000540447	KRTAP10-4	P60372	401 aa	Predicted RBP	3.34	□□□□□ -1.88
YBX3-208	ENST00000540447	KRTAP8-1	Q8IUC2	63 aa		3.3	□□□□□ -1.88
YBX3-208	ENST00000540447	KRTAP4-5	Q9BYR2	181 aa		3.29	□□□□□ -1.88
YBX3-208	ENST00000540447	KRTAP12-4	P60329	112 aa		3.26	□□□□□ -1.89
YBX3-208	ENST00000540447	KRTAP19-5	Q3LI72	72 aa		3.25	□□□□□ -1.89
YBX3-208	ENST00000540447	SPRR2G	Q9BYE4	73 aa		3.21	□□□□□ -1.9
YBX3-208	ENST00000540447	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.2	□□□□□ -1.9
YBX3-208	ENST00000540447	PRKDC	P78527	4128 aa	Known RBP	3.19	□□□□□ -1.9
YBX3-208	ENST00000540447	DNAH8	Q96JB1	4490 aa		3.18	□□□□□ -1.9
YBX3-208	ENST00000540447	DNAH1	Q9P2D7	4330 aa		3.18	□□□□□ -1.9
YBX3-208	ENST00000540447	DNAH11	Q96DT5	4516 aa		3.17	□□□□□ -1.9
YBX3-208	ENST00000540447	ANK2	Q01484	3957 aa		3.16	□□□□□ -1.9
YBX3-208	ENST00000540447	KRTAP19-4	Q3LI73	84 aa		3.16	□□□□□ -1.9
YBX3-208	ENST00000540447	DNAH10	Q8IVF4	4471 aa		3.12	□□□□□ -1.91
YBX3-208	ENST00000540447	DNAH9	Q9NYC9	4486 aa		3.11	□□□□□ -1.91
YBX3-208	ENST00000540447	DNAH2	Q9P225	4427 aa		3.11	□□□□□ -1.91
YBX3-208	ENST00000540447	DNAH3	Q8TD57	4116 aa		3.11	□□□□□ -1.91
YBX3-208	ENST00000540447	KRTAP4-1	Q9BYQ7	146 aa		3.1	□□□□□ -1.91
YBX3-208	ENST00000540447	CMYA5	Q8N3K9	4069 aa		3.09	□□□□□ -1.92
YBX3-208	ENST00000540447	PLEC	Q15149	4684 aa	Known RBP	3.09	□□□□□ -1.92
YBX3-208	ENST00000540447	LYST	Q99698	3801 aa		3.08	□□□□□ -1.92
YBX3-208	ENST00000540447	DNAH6	Q9C0G6	4158 aa		3.07	□□□□□ -1.92
YBX3-208	ENST00000540447	STARD9	Q9P2P6	4700 aa		3.07	□□□□□ -1.92
YBX3-208	ENST00000540447	LCE3B	Q5TA77	95 aa		3.07	□□□□□ -1.92
YBX3-208	ENST00000540447	MT2A	P02795	61 aa		3.05	□□□□□ -1.92
YBX3-208	ENST00000540447	FAT1	Q14517	4588 aa		3.05	□□□□□ -1.92
YBX3-208	ENST00000540447	KRTAP10-7	P60409	375 aa	Predicted RBP	3.05	□□□□□ -1.92
YBX3-208	ENST00000540447	DYNC2H1	Q8NCM8	4307 aa	Known RBP	3.04	□□□□□ -1.92
YBX3-208	ENST00000540447	KMT2A	Q03164	3969 aa		3.02	□□□□□ -1.93
YBX3-208	ENST00000540447	DNAH17	Q9UFH2	4485 aa		3.01	□□□□□ -1.93
YBX3-208	ENST00000540447	HYDIN	Q4G0P3	5121 aa		3.01	□□□□□ -1.93
YBX3-208	ENST00000540447	VPS13D	Q5THJ4	4388 aa		3.01	□□□□□ -1.93
YBX3-208	ENST00000540447	LCE2D	Q5TA82	110 aa	Predicted RBP	3	□□□□□ -1.93
YBX3-208	ENST00000540447	LCE3D	Q9BYE3	92 aa		3	□□□□□ -1.93
YBX3-208	ENST00000540447	KMT2C	Q8NEZ4	4911 aa	Known RBP	3	□□□□□ -1.93
YBX3-208	ENST00000540447	MT1H	P80294	61 aa		2.99	□□□□□ -1.93
YBX3-208	ENST00000540447	MT1F	P04733	61 aa		2.99	□□□□□ -1.93
YBX3-208	ENST00000540447	LCE3E	Q5T5B0	92 aa		2.98	□□□□□ -1.93
YBX3-208	ENST00000540447	KIAA1109	Q2LD37	5005 aa		2.98	□□□□□ -1.93
YBX3-208	ENST00000540447	DNAH7	Q8WXX0	4024 aa		2.95	□□□□□ -1.94
YBX3-208	ENST00000540447	HECTD4	Q9Y4D8	3996 aa		2.95	□□□□□ -1.94
YBX3-208	ENST00000540447	DNAH5	Q8TE73	4624 aa		2.95	□□□□□ -1.94
YBX3-208	ENST00000540447	MT1G	P13640	62 aa		2.94	□□□□□ -1.94
YBX3-208	ENST00000540447	FRAS1	Q86XX4	4008 aa		2.93	□□□□□ -1.94
YBX3-208	ENST00000540447	RYR1	P21817	5038 aa		2.93	□□□□□ -1.94
YBX3-208	ENST00000540447	RYR3	Q15413	4870 aa		2.92	□□□□□ -1.94
YBX3-208	ENST00000540447	PRM1	P04553	51 aa		2.92	□□□□□ -1.94
YBX3-208	ENST00000540447	KRTAP19-1	Q8IUB9	90 aa		2.91	□□□□□ -1.94
YBX3-208	ENST00000540447	MT1X	P80297	61 aa		2.9	□□□□□ -1.94
YBX3-208	ENST00000540447	KRTAP19-8	Q3LI54	63 aa		2.89	□□□□□ -1.95
YBX3-208	ENST00000540447	SPRR2F	Q96RM1	72 aa		2.89	□□□□□ -1.95
YBX3-208	ENST00000540447	DYNC1H1	Q14204	4646 aa	Known RBP	2.89	□□□□□ -1.95
YBX3-208	ENST00000540447	SACS	Q9NZJ4	4579 aa		2.88	□□□□□ -1.95
YBX3-208	ENST00000540447	LRP1B	Q9NZR2	4599 aa		2.88	□□□□□ -1.95
YBX3-208	ENST00000540447	PKHD1	P08F94	4074 aa		2.88	□□□□□ -1.95
YBX3-208	ENST00000540447	MYCBP2	O75592	4640 aa		2.87	□□□□□ -1.95
YBX3-208	ENST00000540447	FAT3	Q8TDW7	4589 aa		2.86	□□□□□ -1.95
YBX3-208	ENST00000540447	APOB	P04114	4563 aa	Known RBP	2.86	□□□□□ -1.95
YBX3-208	ENST00000540447	EPPK1	P58107	5090 aa	Known RBP	2.86	□□□□□ -1.95
YBX3-208	ENST00000540447	VPS13B	Q7Z7G8	4022 aa		2.85	□□□□□ -1.95
YBX3-208	ENST00000540447	RYR2	Q92736	4967 aa		2.84	□□□□□ -1.95
YBX3-208	ENST00000540447	LRP1	Q07954	4544 aa	Known RBP	2.83	□□□□□ -1.96
YBX3-208	ENST00000540447	MT3	P25713	68 aa		2.79	□□□□□ -1.96
YBX3-208	ENST00000540447	KRTAP17-1	Q9BYP8	105 aa		2.79	□□□□□ -1.96
YBX3-208	ENST00000540447	FAT2	Q9NYQ8	4349 aa		2.79	□□□□□ -1.96
YBX3-208	ENST00000540447	HERC2	O95714	4834 aa		2.78	□□□□□ -1.97
YBX3-208	ENST00000540447	MT1B	P07438	61 aa		2.77	□□□□□ -1.97
YBX3-208	ENST00000540447	PKHD1L1	Q86WI1	4243 aa		2.77	□□□□□ -1.97
YBX3-208	ENST00000540447	KRTAP4-8	A0A0G2JLE6	195 aa		2.76	□□□□□ -1.97
YBX3-208	ENST00000540447	KRTAP4-8	Q9BYQ9	185 aa		2.76	□□□□□ -1.97
YBX3-208	ENST00000540447	KRTAP4-7	Q9BYR0	210 aa		2.76	□□□□□ -1.97
YBX3-208	ENST00000540447	PKD1	P98161	4303 aa		2.75	□□□□□ -1.97
YBX3-208	ENST00000540447	SPRR2E	P22531	72 aa		2.74	□□□□□ -1.97
YBX3-208	ENST00000540447	SPRR2B	P35325	72 aa		2.74	□□□□□ -1.97
YBX3-208	ENST00000540447	SPRR2A	P35326	72 aa		2.74	□□□□□ -1.97
YBX3-208	ENST00000540447	PCLO	Q9Y6V0	5065 aa		2.73	□□□□□ -1.97
YBX3-208	ENST00000540447	MT1L	Q93083	61 aa		2.72	□□□□□ -1.97
YBX3-208	ENST00000540447	HSPG2	P98160	4391 aa		2.72	□□□□□ -1.97
YBX3-208	ENST00000540447	ABCA13	Q86UQ4	5058 aa		2.71	□□□□□ -1.98
YBX3-208	ENST00000540447	LRP2	P98164	4655 aa		2.7	□□□□□ -1.98
YBX3-208	ENST00000540447	BIRC6	Q9NR09	4857 aa		2.68	□□□□□ -1.98
YBX3-208	ENST00000540447	KRTAP2-3	P0C7H8	128 aa		2.68	□□□□□ -1.98
YBX3-208	ENST00000540447	KRTAP2-4	Q9BYR9	128 aa		2.68	□□□□□ -1.98
YBX3-208	ENST00000540447	KRTAP2-1	Q9BYU5	128 aa		2.68	□□□□□ -1.98
YBX3-208	ENST00000540447	HERC1	Q15751	4861 aa		2.68	□□□□□ -1.98
YBX3-208	ENST00000540447	RNF213	Q63HN8	5207 aa		2.65	□□□□□ -1.98
YBX3-208	ENST00000540447	SPRR2D	P22532	72 aa		2.65	□□□□□ -1.99
YBX3-208	ENST00000540447	LPA	P08519	4548 aa		2.63	□□□□□ -1.99
YBX3-208	ENST00000540447	UBR4	Q5T4S7	5183 aa		2.62	□□□□□ -1.99
YBX3-208	ENST00000540447	MUC2	Q02817	5179 aa		2.61	□□□□□ -1.99
YBX3-208	ENST00000540447	FSIP2	Q5CZC0	6907 aa		2.6	□□□□□ -1.99
YBX3-208	ENST00000540447	KRTAP9-8	Q9BYQ0	159 aa		2.6	□□□□□ -1.99
YBX3-208	ENST00000540447	MT1E	P04732	61 aa		2.6	□□□□□ -1.99
YBX3-208	ENST00000540447	KRTAP19-3	Q7Z4W3	81 aa		2.59	□□□□□ -1.99

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms