RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 HSPG2P98160 4391 aa10.55□□□□□ -0.72
TMEM260-203ENST00000539559 H3BS24 57 aa10.53□□□□□ -0.72
TMEM260-203ENST00000539559 LRP1Q07954 4544 aaKnown RBP10.52□□□□□ -0.73
TMEM260-203ENST00000539559 KRTAP10-8P60410 259 aa10.51□□□□□ -0.73
TMEM260-203ENST00000539559 A0A0D9SG42 100 aa10.5□□□□□ -0.73
TMEM260-203ENST00000539559 K7ERS5 55 aa10.49□□□□□ -0.73
TMEM260-203ENST00000539559 KRTAP13-4Q3LI77 160 aa10.49□□□□□ -0.73
TMEM260-203ENST00000539559 KRTAP3-3Q9BYR6 98 aa10.47□□□□□ -0.73
TMEM260-203ENST00000539559 KRTAP10-6P60371 365 aaPredicted RBP10.46□□□□□ -0.73
TMEM260-203ENST00000539559 RYR1P21817 5038 aa10.46□□□□□ -0.73
TMEM260-203ENST00000539559 KRTAP17-1Q9BYP8 105 aa10.46□□□□□ -0.74
TMEM260-203ENST00000539559 FAT3Q8TDW7 4589 aa10.43□□□□□ -0.74
TMEM260-203ENST00000539559 ROMO1P60602 79 aa10.43□□□□□ -0.74
TMEM260-203ENST00000539559 MYCBP2O75592 4640 aa10.43□□□□□ -0.74
TMEM260-203ENST00000539559 KIAA1109Q2LD37 5005 aa10.36□□□□□ -0.75
TMEM260-203ENST00000539559 TNXBP22105 4242 aa10.36□□□□□ -0.75
TMEM260-203ENST00000539559 KRTAP3-2Q9BYR7 98 aa10.36□□□□□ -0.75
TMEM260-203ENST00000539559 RPL37P61927 97 aaKnown RBP10.35□□□□□ -0.75
TMEM260-203ENST00000539559 P0C880 135 aa10.31□□□□□ -0.76
TMEM260-203ENST00000539559 EPPK1P58107 5090 aaKnown RBP10.29□□□□□ -0.76
TMEM260-203ENST00000539559 S4R3F8 94 aa10.29□□□□□ -0.76
TMEM260-203ENST00000539559 MT1HL1P0DM35 61 aa10.27□□□□□ -0.77
TMEM260-203ENST00000539559 C10orf95Q9H7T3 257 aa10.26□□□□□ -0.77
TMEM260-203ENST00000539559 TPRXLQ17RH7 258 aa10.25□□□□□ -0.77
TMEM260-203ENST00000539559 XP32Q5T750 250 aa10.25□□□□□ -0.77
TMEM260-203ENST00000539559 LPAP08519 4548 aa10.17□□□□□ -0.78
TMEM260-203ENST00000539559 KRTAP12-2P59991 146 aa10.14□□□□□ -0.79
TMEM260-203ENST00000539559 KRTAP4-5Q9BYR2 181 aa10.1□□□□□ -0.79
TMEM260-203ENST00000539559 SPINT4Q6UDR6 99 aa10.1□□□□□ -0.79
TMEM260-203ENST00000539559 KRTAP12-1P59990 96 aa9.99□□□□□ -0.81
TMEM260-203ENST00000539559 LRP2P98164 4655 aa9.98□□□□□ -0.81
TMEM260-203ENST00000539559 J3QL48 77 aa9.85□□□□□ -0.83
TMEM260-203ENST00000539559 KRTAP15-1Q3LI76 137 aa9.79□□□□□ -0.84
TMEM260-203ENST00000539559 ABCA13Q86UQ4 5058 aa9.78□□□□□ -0.84
TMEM260-203ENST00000539559 NDUFAF8A1L188 74 aa9.77□□□□□ -0.85
TMEM260-203ENST00000539559 BIRC6Q9NR09 4857 aa9.73□□□□□ -0.85
TMEM260-203ENST00000539559 M0QZ58 72 aa9.73□□□□□ -0.85
TMEM260-203ENST00000539559 HERC2O95714 4834 aa9.71□□□□□ -0.85
TMEM260-203ENST00000539559 SEC61BP60468 96 aaKnown RBP9.61□□□□□ -0.87
TMEM260-203ENST00000539559 R4GN34 69 aa9.59□□□□□ -0.87
TMEM260-203ENST00000539559 LORP23490 312 aaPredicted RBP9.59□□□□□ -0.87
TMEM260-203ENST00000539559 MUC17Q685J3 4493 aa9.41□□□□□ -0.9
TMEM260-203ENST00000539559 KRTAP4-1Q9BYQ7 146 aa9.39□□□□□ -0.91
TMEM260-203ENST00000539559 PCLOQ9Y6V0 5065 aa9.34□□□□□ -0.91
TMEM260-203ENST00000539559 PLAC4Q8WY50 150 aa9.27□□□□□ -0.93
TMEM260-203ENST00000539559 HERC1Q15751 4861 aa9.22□□□□□ -0.93
TMEM260-203ENST00000539559 MUC2Q02817 5179 aa9.22□□□□□ -0.93
TMEM260-203ENST00000539559 CAMK2N1Q7Z7J9 78 aa9.17□□□□□ -0.94
TMEM260-203ENST00000539559 KRTAP19-2Q3LHN2 52 aa9.16□□□□□ -0.94
TMEM260-203ENST00000539559 HMCN2Q8NDA2 5059 aa9.14□□□□□ -0.95
TMEM260-203ENST00000539559 PP632Q6XCG6 107 aa8.92□□□□□ -0.98
TMEM260-203ENST00000539559 FLGP20930 4061 aaPredicted RBP8.87□□□□□ -0.99
TMEM260-203ENST00000539559 LUZP6Q538Z0 58 aa8.86□□□□□ -0.99
TMEM260-203ENST00000539559 LCE2CQ5TA81 110 aa8.82□□□□□ -1
TMEM260-203ENST00000539559 TNP1P09430 55 aa8.77□□□□□ -1.01
TMEM260-203ENST00000539559 UBR4Q5T4S7 5183 aa8.74□□□□□ -1.01
TMEM260-203ENST00000539559 FAT4Q6V0I7 4981 aa8.72□□□□□ -1.01
TMEM260-203ENST00000539559 RNF213Q63HN8 5207 aa8.68□□□□□ -1.02
TMEM260-203ENST00000539559 M0R2T5 61 aa8.64□□□□□ -1.03
TMEM260-203ENST00000539559 MT1HP80294 61 aa8.63□□□□□ -1.03
TMEM260-203ENST00000539559 A0A0A0MQY5 61 aa8.52□□□□□ -1.05
TMEM260-203ENST00000539559 SPRR5A0A1B0GTR4 108 aa8.48□□□□□ -1.05
TMEM260-203ENST00000539559 KRTAP19-1Q8IUB9 90 aa8.47□□□□□ -1.05
TMEM260-203ENST00000539559 KRTAP23-1A1A580 65 aa8.47□□□□□ -1.05
TMEM260-203ENST00000539559 SPRR2GQ9BYE4 73 aa8.42□□□□□ -1.06
TMEM260-203ENST00000539559 LCE3AQ5TA76 89 aa8.39□□□□□ -1.07
TMEM260-203ENST00000539559 MT2AP02795 61 aa8.36□□□□□ -1.07
TMEM260-203ENST00000539559 KRTAP9-8Q9BYQ0 159 aa8.36□□□□□ -1.07
TMEM260-203ENST00000539559 KRTAP10-10P60014 251 aa8.35□□□□□ -1.07
TMEM260-203ENST00000539559 MT1FP04733 61 aa8.33□□□□□ -1.08
TMEM260-203ENST00000539559 KRTAP19-8Q3LI54 63 aa8.07□□□□□ -1.12
TMEM260-203ENST00000539559 KRTAP9-3Q9BYQ3 159 aa8.04□□□□□ -1.12
TMEM260-203ENST00000539559 KRTAP8-1Q8IUC2 63 aa8.03□□□□□ -1.12
TMEM260-203ENST00000539559 KRTAP10-5P60370 271 aa8.02□□□□□ -1.13
TMEM260-203ENST00000539559 LCE2AQ5TA79 106 aaPredicted RBP8.02□□□□□ -1.13
TMEM260-203ENST00000539559 MT1XP80297 61 aa8□□□□□ -1.13
TMEM260-203ENST00000539559 MT1BP07438 61 aa7.99□□□□□ -1.13
TMEM260-203ENST00000539559 KRTAP12-3P60328 96 aa7.91□□□□□ -1.14
TMEM260-203ENST00000539559 KRTAP10-12P60413 245 aa7.9□□□□□ -1.14
TMEM260-203ENST00000539559 KRTAP10-7P60409 375 aaPredicted RBP7.89□□□□□ -1.15
TMEM260-203ENST00000539559 LCE2BO14633 110 aa7.76□□□□□ -1.17
TMEM260-203ENST00000539559 PRO2289Q9P1D8 64 aa7.69□□□□□ -1.18
TMEM260-203ENST00000539559 KMT2DO14686 5537 aa7.66□□□□□ -1.18
TMEM260-203ENST00000539559 USH2AO75445 5202 aa7.63□□□□□ -1.19
TMEM260-203ENST00000539559 INE1O15225 51 aa7.58□□□□□ -1.2
TMEM260-203ENST00000539559 KRTAP19-5Q3LI72 72 aa7.57□□□□□ -1.2
TMEM260-203ENST00000539559 LCE3CQ5T5A8 94 aa7.45□□□□□ -1.22
TMEM260-203ENST00000539559 KRTAP4-8A0A0G2JLE6 195 aa7.43□□□□□ -1.22
TMEM260-203ENST00000539559 KRTAP4-8Q9BYQ9 185 aa7.43□□□□□ -1.22
TMEM260-203ENST00000539559 LCE2DQ5TA82 110 aaPredicted RBP7.41□□□□□ -1.22
TMEM260-203ENST00000539559 KRTAP9-6A8MVA2 160 aa7.34□□□□□ -1.24
TMEM260-203ENST00000539559 KRTAP4-7Q9BYR0 210 aa7.27□□□□□ -1.25
TMEM260-203ENST00000539559 KRTAP19-6Q3LI70 58 aa7.18□□□□□ -1.26
TMEM260-203ENST00000539559 SSPOA2VEC9 5147 aa7.16□□□□□ -1.26
TMEM260-203ENST00000539559 KRTAP19-7Q3SYF9 63 aa7.13□□□□□ -1.27
TMEM260-203ENST00000539559 FSIP2Q5CZC0 6907 aa7.08□□□□□ -1.28
TMEM260-203ENST00000539559 KRTAP2-3P0C7H8 128 aa6.99□□□□□ -1.29
TMEM260-203ENST00000539559 KRTAP2-4Q9BYR9 128 aa6.99□□□□□ -1.29
TMEM260-203ENST00000539559 KRTAP2-1Q9BYU5 128 aa6.99□□□□□ -1.29
TMEM260-203ENST00000539559 MT1LQ93083 61 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 394.9 ms