RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DMBT1Q9UGM3 2413 aaPredicted RBP6.18□□□□□ -1.42
USP3-203ENST00000538686 FBN3Q75N90 2809 aa6.16□□□□□ -1.42
USP3-203ENST00000538686 MGAM2Q2M2H8 2515 aa6.11□□□□□ -1.43
USP3-203ENST00000538686 PP632Q6XCG6 107 aa6.09□□□□□ -1.43
USP3-203ENST00000538686 KRTAP10-2P60368 255 aa6.08□□□□□ -1.44
USP3-203ENST00000538686 STAB1Q9NY15 2570 aa6.07□□□□□ -1.44
USP3-203ENST00000538686 KRTAP10-1P60331 282 aa6.03□□□□□ -1.44
USP3-203ENST00000538686 DNAH5Q8TE73 4624 aa6.03□□□□□ -1.44
USP3-203ENST00000538686 PRO2289Q9P1D8 64 aa6.02□□□□□ -1.45
USP3-203ENST00000538686 SACSQ9NZJ4 4579 aa5.99□□□□□ -1.45
USP3-203ENST00000538686 LRP1BQ9NZR2 4599 aa5.99□□□□□ -1.45
USP3-203ENST00000538686 VPS13BQ7Z7G8 4022 aa5.97□□□□□ -1.45
USP3-203ENST00000538686 STARD9Q9P2P6 4700 aa5.96□□□□□ -1.45
USP3-203ENST00000538686 KRTAP10-8P60410 259 aa5.95□□□□□ -1.46
USP3-203ENST00000538686 PKHD1L1Q86WI1 4243 aa5.9□□□□□ -1.46
USP3-203ENST00000538686 SPRR5A0A1B0GTR4 108 aa5.86□□□□□ -1.47
USP3-203ENST00000538686 R4GN34 69 aa5.83□□□□□ -1.48
USP3-203ENST00000538686 INE1O15225 51 aa5.83□□□□□ -1.48
USP3-203ENST00000538686 MYCBP2O75592 4640 aa5.82□□□□□ -1.48
USP3-203ENST00000538686 PKHD1P08F94 4074 aa5.77□□□□□ -1.49
USP3-203ENST00000538686 PKD1P98161 4303 aa5.77□□□□□ -1.49
USP3-203ENST00000538686 APOBP04114 4563 aaKnown RBP5.76□□□□□ -1.49
USP3-203ENST00000538686 FAT2Q9NYQ8 4349 aa5.74□□□□□ -1.49
USP3-203ENST00000538686 KRTAP23-1A1A580 65 aa5.74□□□□□ -1.49
USP3-203ENST00000538686 LRP1Q07954 4544 aaKnown RBP5.73□□□□□ -1.49
USP3-203ENST00000538686 TNXBP22105 4242 aa5.63□□□□□ -1.51
USP3-203ENST00000538686 J3QL48 77 aa5.62□□□□□ -1.51
USP3-203ENST00000538686 KRTAP10-4P60372 401 aaPredicted RBP5.61□□□□□ -1.51
USP3-203ENST00000538686 LCE2BO14633 110 aa5.6□□□□□ -1.51
USP3-203ENST00000538686 SMR3BP02814 79 aaPredicted RBP5.6□□□□□ -1.51
USP3-203ENST00000538686 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
USP3-203ENST00000538686 TNP1P09430 55 aa5.55□□□□□ -1.52
USP3-203ENST00000538686 Q5VSD8 79 aa5.53□□□□□ -1.52
USP3-203ENST00000538686 HSPG2P98160 4391 aa5.52□□□□□ -1.53
USP3-203ENST00000538686 DYNC1H1Q14204 4646 aaKnown RBP5.52□□□□□ -1.53
USP3-203ENST00000538686 FAT1Q14517 4588 aa5.46□□□□□ -1.54
USP3-203ENST00000538686 LORP23490 312 aaPredicted RBP5.44□□□□□ -1.54
USP3-203ENST00000538686 KRTAP4-8Q9BYQ9 185 aa5.41□□□□□ -1.54
USP3-203ENST00000538686 KRTAP17-1Q9BYP8 105 aa5.39□□□□□ -1.55
USP3-203ENST00000538686 HYDINQ4G0P3 5121 aa5.35□□□□□ -1.55
USP3-203ENST00000538686 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.3□□□□□ -1.56
USP3-203ENST00000538686 A0A1B0GVY2 172 aa5.27□□□□□ -1.57
USP3-203ENST00000538686 KRTAP9-2Q9BYQ4 174 aa5.27□□□□□ -1.57
USP3-203ENST00000538686 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
USP3-203ENST00000538686 LCE2AQ5TA79 106 aaPredicted RBP5.24□□□□□ -1.57
USP3-203ENST00000538686 LPAP08519 4548 aa5.19□□□□□ -1.58
USP3-203ENST00000538686 KRTAP4-8A0A0G2JLE6 195 aa5.19□□□□□ -1.58
USP3-203ENST00000538686 KRTAP9-8Q9BYQ0 159 aa5.19□□□□□ -1.58
USP3-203ENST00000538686 LCE2CQ5TA81 110 aa5.18□□□□□ -1.58
USP3-203ENST00000538686 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
USP3-203ENST00000538686 FLGP20930 4061 aaPredicted RBP5.11□□□□□ -1.59
USP3-203ENST00000538686 DNHD1Q96M86 4753 aa5.1□□□□□ -1.59
USP3-203ENST00000538686 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
USP3-203ENST00000538686 LCE3BQ5TA77 95 aa5.08□□□□□ -1.6
USP3-203ENST00000538686 LRP2P98164 4655 aa5.06□□□□□ -1.6
USP3-203ENST00000538686 MT1HL1P0DM35 61 aa5.06□□□□□ -1.6
USP3-203ENST00000538686 LCE3AQ5TA76 89 aa5.05□□□□□ -1.6
USP3-203ENST00000538686 KRTAP8-1Q8IUC2 63 aa5.01□□□□□ -1.61
USP3-203ENST00000538686 KMT2CQ8NEZ4 4911 aaKnown RBP5.01□□□□□ -1.61
USP3-203ENST00000538686 KRTAP9-9Q9BYP9 154 aa4.99□□□□□ -1.61
USP3-203ENST00000538686 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
USP3-203ENST00000538686 KRTAP10-10P60014 251 aa4.96□□□□□ -1.61
USP3-203ENST00000538686 MUC17Q685J3 4493 aa4.96□□□□□ -1.62
USP3-203ENST00000538686 KRTAP19-2Q3LHN2 52 aa4.92□□□□□ -1.62
USP3-203ENST00000538686 KRTAP10-12P60413 245 aa4.89□□□□□ -1.63
USP3-203ENST00000538686 HERC1Q15751 4861 aa4.87□□□□□ -1.63
USP3-203ENST00000538686 KRTAP4-2Q9BYR5 136 aa4.85□□□□□ -1.63
USP3-203ENST00000538686 SPRR2GQ9BYE4 73 aa4.84□□□□□ -1.64
USP3-203ENST00000538686 KRTAP4-1Q9BYQ7 146 aa4.84□□□□□ -1.64
USP3-203ENST00000538686 KRTAP12-3P60328 96 aa4.83□□□□□ -1.64
USP3-203ENST00000538686 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
USP3-203ENST00000538686 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
USP3-203ENST00000538686 KRTAP10-5P60370 271 aa4.72□□□□□ -1.65
USP3-203ENST00000538686 RYR2Q92736 4967 aa4.72□□□□□ -1.65
USP3-203ENST00000538686 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.65
USP3-203ENST00000538686 RYR1P21817 5038 aa4.69□□□□□ -1.66
USP3-203ENST00000538686 KRTAP19-1Q8IUB9 90 aa4.68□□□□□ -1.66
USP3-203ENST00000538686 KRTAP2-3P0C7H8 128 aa4.6□□□□□ -1.67
USP3-203ENST00000538686 KRTAP2-4Q9BYR9 128 aa4.6□□□□□ -1.67
USP3-203ENST00000538686 KRTAP2-1Q9BYU5 128 aa4.6□□□□□ -1.67
USP3-203ENST00000538686 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
USP3-203ENST00000538686 KRTAP4-5Q9BYR2 181 aa4.5□□□□□ -1.69
USP3-203ENST00000538686 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
USP3-203ENST00000538686 MT1XP80297 61 aa4.48□□□□□ -1.69
USP3-203ENST00000538686 ABCA13Q86UQ4 5058 aa4.48□□□□□ -1.69
USP3-203ENST00000538686 RYR3Q15413 4870 aa4.46□□□□□ -1.7
USP3-203ENST00000538686 M0R2T5 61 aa4.43□□□□□ -1.7
USP3-203ENST00000538686 KRTAP10-7P60409 375 aaPredicted RBP4.42□□□□□ -1.7
USP3-203ENST00000538686 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
USP3-203ENST00000538686 KRTAP9-6A8MVA2 160 aa4.37□□□□□ -1.71
USP3-203ENST00000538686 KRTAP19-4Q3LI73 84 aa4.36□□□□□ -1.71
USP3-203ENST00000538686 KIAA1109Q2LD37 5005 aa4.36□□□□□ -1.71
USP3-203ENST00000538686 MT1BP07438 61 aa4.34□□□□□ -1.71
USP3-203ENST00000538686 KRTAP19-5Q3LI72 72 aa4.34□□□□□ -1.71
USP3-203ENST00000538686 PCLOQ9Y6V0 5065 aa4.33□□□□□ -1.72
USP3-203ENST00000538686 HERC2O95714 4834 aa4.3□□□□□ -1.72
USP3-203ENST00000538686 MT1FP04733 61 aa4.3□□□□□ -1.72
USP3-203ENST00000538686 MT2AP02795 61 aa4.29□□□□□ -1.72
USP3-203ENST00000538686 KRTAP21-3Q3LHN1 58 aa4.28□□□□□ -1.72
USP3-203ENST00000538686 BIRC6Q9NR09 4857 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms