RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 KRTAP21-3Q3LHN1 58 aa6.98□□□□□ -1.29
HDAC4-214ENST00000535493 KRTAP13-4Q3LI77 160 aa6.98□□□□□ -1.29
HDAC4-214ENST00000535493 KMT2CQ8NEZ4 4911 aaKnown RBP6.96□□□□□ -1.29
HDAC4-214ENST00000535493 LPAP08519 4548 aa6.96□□□□□ -1.3
HDAC4-214ENST00000535493 K7ERS5 55 aa6.96□□□□□ -1.3
HDAC4-214ENST00000535493 KRTAP10-4P60372 401 aaPredicted RBP6.95□□□□□ -1.3
HDAC4-214ENST00000535493 KRTAP10-6P60371 365 aaPredicted RBP6.92□□□□□ -1.3
HDAC4-214ENST00000535493 TNXBP22105 4242 aa6.92□□□□□ -1.3
HDAC4-214ENST00000535493 KRTAP3-3Q9BYR6 98 aa6.92□□□□□ -1.3
HDAC4-214ENST00000535493 KRTAP10-8P60410 259 aa6.91□□□□□ -1.3
HDAC4-214ENST00000535493 C10orf95Q9H7T3 257 aa6.89□□□□□ -1.31
HDAC4-214ENST00000535493 RPL37P61927 97 aaKnown RBP6.87□□□□□ -1.31
HDAC4-214ENST00000535493 P0C880 135 aa6.86□□□□□ -1.31
HDAC4-214ENST00000535493 KRTAP3-2Q9BYR7 98 aa6.85□□□□□ -1.31
HDAC4-214ENST00000535493 TPRXLQ17RH7 258 aa6.84□□□□□ -1.31
HDAC4-214ENST00000535493 RYR2Q92736 4967 aa6.83□□□□□ -1.32
HDAC4-214ENST00000535493 A0A1B0GVY2 172 aa6.82□□□□□ -1.32
HDAC4-214ENST00000535493 LRP2P98164 4655 aa6.79□□□□□ -1.32
HDAC4-214ENST00000535493 S4R3F8 94 aa6.78□□□□□ -1.32
HDAC4-214ENST00000535493 SPINT4Q6UDR6 99 aa6.78□□□□□ -1.32
HDAC4-214ENST00000535493 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
HDAC4-214ENST00000535493 XP32Q5T750 250 aa6.75□□□□□ -1.33
HDAC4-214ENST00000535493 RYR1P21817 5038 aa6.68□□□□□ -1.34
HDAC4-214ENST00000535493 KIAA1109Q2LD37 5005 aa6.67□□□□□ -1.34
HDAC4-214ENST00000535493 Q5VSD8 79 aa6.64□□□□□ -1.35
HDAC4-214ENST00000535493 KRTAP17-1Q9BYP8 105 aa6.64□□□□□ -1.35
HDAC4-214ENST00000535493 RYR3Q15413 4870 aa6.64□□□□□ -1.35
HDAC4-214ENST00000535493 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
HDAC4-214ENST00000535493 ABCA13Q86UQ4 5058 aa6.61□□□□□ -1.35
HDAC4-214ENST00000535493 NDUFAF8A1L188 74 aa6.59□□□□□ -1.35
HDAC4-214ENST00000535493 KRTAP15-1Q3LI76 137 aa6.53□□□□□ -1.36
HDAC4-214ENST00000535493 MT1HL1P0DM35 61 aa6.47□□□□□ -1.37
HDAC4-214ENST00000535493 M0QZ58 72 aa6.43□□□□□ -1.38
HDAC4-214ENST00000535493 EPPK1P58107 5090 aaKnown RBP6.42□□□□□ -1.38
HDAC4-214ENST00000535493 MUC2Q02817 5179 aa6.41□□□□□ -1.38
HDAC4-214ENST00000535493 LORP23490 312 aaPredicted RBP6.38□□□□□ -1.39
HDAC4-214ENST00000535493 R4GN34 69 aa6.37□□□□□ -1.39
HDAC4-214ENST00000535493 MUC17Q685J3 4493 aa6.29□□□□□ -1.4
HDAC4-214ENST00000535493 KRTAP4-5Q9BYR2 181 aa6.23□□□□□ -1.41
HDAC4-214ENST00000535493 KRTAP4-1Q9BYQ7 146 aa6.19□□□□□ -1.42
HDAC4-214ENST00000535493 PLAC4Q8WY50 150 aa6.18□□□□□ -1.42
HDAC4-214ENST00000535493 A0A0A0MQY5 61 aa6.14□□□□□ -1.43
HDAC4-214ENST00000535493 CAMK2N1Q7Z7J9 78 aa6.1□□□□□ -1.43
HDAC4-214ENST00000535493 HERC2O95714 4834 aa6.06□□□□□ -1.44
HDAC4-214ENST00000535493 PCLOQ9Y6V0 5065 aa6.06□□□□□ -1.44
HDAC4-214ENST00000535493 SEC61BP60468 96 aaKnown RBP6.05□□□□□ -1.44
HDAC4-214ENST00000535493 FAT4Q6V0I7 4981 aa6.03□□□□□ -1.44
HDAC4-214ENST00000535493 KRTAP19-2Q3LHN2 52 aa5.97□□□□□ -1.45
HDAC4-214ENST00000535493 FLGP20930 4061 aaPredicted RBP5.96□□□□□ -1.46
HDAC4-214ENST00000535493 BIRC6Q9NR09 4857 aa5.95□□□□□ -1.46
HDAC4-214ENST00000535493 HERC1Q15751 4861 aa5.94□□□□□ -1.46
HDAC4-214ENST00000535493 J3QL48 77 aa5.93□□□□□ -1.46
HDAC4-214ENST00000535493 LUZP6Q538Z0 58 aa5.92□□□□□ -1.46
HDAC4-214ENST00000535493 PP632Q6XCG6 107 aa5.86□□□□□ -1.47
HDAC4-214ENST00000535493 RNF213Q63HN8 5207 aa5.83□□□□□ -1.48
HDAC4-214ENST00000535493 TNP1P09430 55 aa5.79□□□□□ -1.48
HDAC4-214ENST00000535493 HMCN2Q8NDA2 5059 aa5.71□□□□□ -1.5
HDAC4-214ENST00000535493 UBR4Q5T4S7 5183 aa5.64□□□□□ -1.51
HDAC4-214ENST00000535493 SPRR5A0A1B0GTR4 108 aa5.58□□□□□ -1.52
HDAC4-214ENST00000535493 M0R2T5 61 aa5.58□□□□□ -1.52
HDAC4-214ENST00000535493 KRTAP19-1Q8IUB9 90 aa5.58□□□□□ -1.52
HDAC4-214ENST00000535493 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
HDAC4-214ENST00000535493 LCE2CQ5TA81 110 aa5.56□□□□□ -1.52
HDAC4-214ENST00000535493 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
HDAC4-214ENST00000535493 SPRR2GQ9BYE4 73 aa5.51□□□□□ -1.53
HDAC4-214ENST00000535493 KRTAP10-10P60014 251 aa5.45□□□□□ -1.54
HDAC4-214ENST00000535493 MT1FP04733 61 aa5.43□□□□□ -1.54
HDAC4-214ENST00000535493 MT1HP80294 61 aa5.4□□□□□ -1.55
HDAC4-214ENST00000535493 MT2AP02795 61 aa5.38□□□□□ -1.55
HDAC4-214ENST00000535493 KMT2DO14686 5537 aa5.34□□□□□ -1.55
HDAC4-214ENST00000535493 USH2AO75445 5202 aa5.33□□□□□ -1.56
HDAC4-214ENST00000535493 KRTAP9-8Q9BYQ0 159 aa5.31□□□□□ -1.56
HDAC4-214ENST00000535493 KRTAP10-5P60370 271 aa5.28□□□□□ -1.56
HDAC4-214ENST00000535493 KRTAP8-1Q8IUC2 63 aa5.27□□□□□ -1.57
HDAC4-214ENST00000535493 MT1XP80297 61 aa5.26□□□□□ -1.57
HDAC4-214ENST00000535493 MT1BP07438 61 aa5.24□□□□□ -1.57
HDAC4-214ENST00000535493 KRTAP12-3P60328 96 aa5.24□□□□□ -1.57
HDAC4-214ENST00000535493 KRTAP10-7P60409 375 aaPredicted RBP5.23□□□□□ -1.57
HDAC4-214ENST00000535493 KRTAP10-12P60413 245 aa5.21□□□□□ -1.58
HDAC4-214ENST00000535493 KRTAP19-8Q3LI54 63 aa5.18□□□□□ -1.58
HDAC4-214ENST00000535493 PRO2289Q9P1D8 64 aa5.16□□□□□ -1.58
HDAC4-214ENST00000535493 KRTAP9-3Q9BYQ3 159 aa5.05□□□□□ -1.6
HDAC4-214ENST00000535493 INE1O15225 51 aa5.01□□□□□ -1.61
HDAC4-214ENST00000535493 KRTAP19-5Q3LI72 72 aa5.01□□□□□ -1.61
HDAC4-214ENST00000535493 KRTAP4-8A0A0G2JLE6 195 aa4.95□□□□□ -1.62
HDAC4-214ENST00000535493 KRTAP4-8Q9BYQ9 185 aa4.95□□□□□ -1.62
HDAC4-214ENST00000535493 LCE3CQ5T5A8 94 aa4.91□□□□□ -1.62
HDAC4-214ENST00000535493 LCE2BO14633 110 aa4.9□□□□□ -1.62
HDAC4-214ENST00000535493 KRTAP9-6A8MVA2 160 aa4.88□□□□□ -1.63
HDAC4-214ENST00000535493 KRTAP4-7Q9BYR0 210 aa4.87□□□□□ -1.63
HDAC4-214ENST00000535493 FSIP2Q5CZC0 6907 aa4.82□□□□□ -1.64
HDAC4-214ENST00000535493 KRTAP19-7Q3SYF9 63 aa4.69□□□□□ -1.66
HDAC4-214ENST00000535493 LCE2AQ5TA79 106 aaPredicted RBP4.69□□□□□ -1.66
HDAC4-214ENST00000535493 DSTQ03001 7570 aaKnown RBP4.61□□□□□ -1.67
HDAC4-214ENST00000535493 KRTAP2-3P0C7H8 128 aa4.6□□□□□ -1.67
HDAC4-214ENST00000535493 KRTAP2-4Q9BYR9 128 aa4.6□□□□□ -1.67
HDAC4-214ENST00000535493 KRTAP2-1Q9BYU5 128 aa4.6□□□□□ -1.67
HDAC4-214ENST00000535493 MUC12Q9UKN1 5478 aa4.6□□□□□ -1.67
HDAC4-214ENST00000535493 SSPOA2VEC9 5147 aa4.6□□□□□ -1.67
HDAC4-214ENST00000535493 FCGBPQ9Y6R7 5405 aaPredicted RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 151 ms