RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 A0A1B0GVY2 172 aa10.22□□□□□ -0.77
SMPD1-210ENST00000534405 PKHD1L1Q86WI1 4243 aa10.21□□□□□ -0.77
SMPD1-210ENST00000534405 KRTAP3-1Q9BYR8 98 aa10.19□□□□□ -0.78
SMPD1-210ENST00000534405 C9orf92A6NGG3 77 aa10.19□□□□□ -0.78
SMPD1-210ENST00000534405 RPL37P61927 97 aaKnown RBP10.16□□□□□ -0.78
SMPD1-210ENST00000534405 C10orf95Q9H7T3 257 aa10.1□□□□□ -0.79
SMPD1-210ENST00000534405 RYR2Q92736 4967 aa10.07□□□□□ -0.8
SMPD1-210ENST00000534405 KMT2CQ8NEZ4 4911 aaKnown RBP10□□□□□ -0.81
SMPD1-210ENST00000534405 KRTAP13-4Q3LI77 160 aa9.95□□□□□ -0.82
SMPD1-210ENST00000534405 KRTAP10-6P60371 365 aaPredicted RBP9.93□□□□□ -0.82
SMPD1-210ENST00000534405 LRP1Q07954 4544 aaKnown RBP9.92□□□□□ -0.82
SMPD1-210ENST00000534405 A0A0D9SG42 100 aa9.91□□□□□ -0.82
SMPD1-210ENST00000534405 TNXBP22105 4242 aa9.87□□□□□ -0.83
SMPD1-210ENST00000534405 FAT3Q8TDW7 4589 aa9.87□□□□□ -0.83
SMPD1-210ENST00000534405 LUZP6Q538Z0 58 aa9.84□□□□□ -0.83
SMPD1-210ENST00000534405 S4R3F8 94 aa9.8□□□□□ -0.84
SMPD1-210ENST00000534405 KRTAP10-8P60410 259 aa9.79□□□□□ -0.84
SMPD1-210ENST00000534405 HSPG2P98160 4391 aa9.79□□□□□ -0.84
SMPD1-210ENST00000534405 KRTAP3-2Q9BYR7 98 aa9.78□□□□□ -0.84
SMPD1-210ENST00000534405 Q5VSD8 79 aa9.74□□□□□ -0.85
SMPD1-210ENST00000534405 DMBT1Q9UGM3 2413 aaPredicted RBP9.73□□□□□ -0.85
SMPD1-210ENST00000534405 XP32Q5T750 250 aa9.72□□□□□ -0.85
SMPD1-210ENST00000534405 KRTAP17-1Q9BYP8 105 aa9.71□□□□□ -0.85
SMPD1-210ENST00000534405 KRTAP12-2P59991 146 aa9.71□□□□□ -0.86
SMPD1-210ENST00000534405 KRTAP3-3Q9BYR6 98 aa9.71□□□□□ -0.86
SMPD1-210ENST00000534405 MYCBP2O75592 4640 aa9.69□□□□□ -0.86
SMPD1-210ENST00000534405 RYR3Q15413 4870 aa9.66□□□□□ -0.86
SMPD1-210ENST00000534405 RYR1P21817 5038 aa9.65□□□□□ -0.86
SMPD1-210ENST00000534405 KRTAP12-1P59990 96 aa9.58□□□□□ -0.88
SMPD1-210ENST00000534405 KIAA1109Q2LD37 5005 aa9.55□□□□□ -0.88
SMPD1-210ENST00000534405 MT1HL1P0DM35 61 aa9.52□□□□□ -0.89
SMPD1-210ENST00000534405 PLAC4Q8WY50 150 aa9.44□□□□□ -0.9
SMPD1-210ENST00000534405 LPAP08519 4548 aa9.41□□□□□ -0.9
SMPD1-210ENST00000534405 LRP2P98164 4655 aa9.35□□□□□ -0.91
SMPD1-210ENST00000534405 EPPK1P58107 5090 aaKnown RBP9.32□□□□□ -0.92
SMPD1-210ENST00000534405 M0QZ58 72 aa9.27□□□□□ -0.92
SMPD1-210ENST00000534405 SEC61BP60468 96 aaKnown RBP9.22□□□□□ -0.93
SMPD1-210ENST00000534405 ABCA13Q86UQ4 5058 aa9.22□□□□□ -0.93
SMPD1-210ENST00000534405 KRTAP4-5Q9BYR2 181 aa9.17□□□□□ -0.94
SMPD1-210ENST00000534405 PP632Q6XCG6 107 aa8.93□□□□□ -0.98
SMPD1-210ENST00000534405 MUC17Q685J3 4493 aa8.92□□□□□ -0.98
SMPD1-210ENST00000534405 KRTAP4-1Q9BYQ7 146 aa8.9□□□□□ -0.99
SMPD1-210ENST00000534405 R4GN34 69 aa8.8□□□□□ -1
SMPD1-210ENST00000534405 CAMK2N1Q7Z7J9 78 aa8.79□□□□□ -1
SMPD1-210ENST00000534405 HERC2O95714 4834 aa8.78□□□□□ -1
SMPD1-210ENST00000534405 LORP23490 312 aaPredicted RBP8.76□□□□□ -1.01
SMPD1-210ENST00000534405 J3QL48 77 aa8.76□□□□□ -1.01
SMPD1-210ENST00000534405 KRTAP19-2Q3LHN2 52 aa8.73□□□□□ -1.01
SMPD1-210ENST00000534405 SPRR5A0A1B0GTR4 108 aa8.72□□□□□ -1.01
SMPD1-210ENST00000534405 PRO2289Q9P1D8 64 aa8.68□□□□□ -1.02
SMPD1-210ENST00000534405 MUC2Q02817 5179 aa8.62□□□□□ -1.03
SMPD1-210ENST00000534405 BIRC6Q9NR09 4857 aa8.6□□□□□ -1.03
SMPD1-210ENST00000534405 KRTAP23-1A1A580 65 aa8.45□□□□□ -1.06
SMPD1-210ENST00000534405 FLGP20930 4061 aaPredicted RBP8.44□□□□□ -1.06
SMPD1-210ENST00000534405 INE1O15225 51 aa8.39□□□□□ -1.07
SMPD1-210ENST00000534405 HERC1Q15751 4861 aa8.38□□□□□ -1.07
SMPD1-210ENST00000534405 PCLOQ9Y6V0 5065 aa8.33□□□□□ -1.08
SMPD1-210ENST00000534405 HMCN2Q8NDA2 5059 aa8.31□□□□□ -1.08
SMPD1-210ENST00000534405 TNP1P09430 55 aa8.29□□□□□ -1.08
SMPD1-210ENST00000534405 FAT4Q6V0I7 4981 aa8.22□□□□□ -1.09
SMPD1-210ENST00000534405 LCE2CQ5TA81 110 aa8.21□□□□□ -1.1
SMPD1-210ENST00000534405 UBR4Q5T4S7 5183 aa7.99□□□□□ -1.13
SMPD1-210ENST00000534405 KRTAP19-1Q8IUB9 90 aa7.99□□□□□ -1.13
SMPD1-210ENST00000534405 RNF213Q63HN8 5207 aa7.98□□□□□ -1.13
SMPD1-210ENST00000534405 SPRR2GQ9BYE4 73 aa7.98□□□□□ -1.13
SMPD1-210ENST00000534405 MT1HP80294 61 aa7.96□□□□□ -1.14
SMPD1-210ENST00000534405 M0R2T5 61 aa7.93□□□□□ -1.14
SMPD1-210ENST00000534405 MT1FP04733 61 aa7.85□□□□□ -1.15
SMPD1-210ENST00000534405 MT2AP02795 61 aa7.83□□□□□ -1.16
SMPD1-210ENST00000534405 KRTAP9-8Q9BYQ0 159 aa7.79□□□□□ -1.16
SMPD1-210ENST00000534405 KRTAP10-10P60014 251 aa7.78□□□□□ -1.16
SMPD1-210ENST00000534405 LCE3AQ5TA76 89 aa7.74□□□□□ -1.17
SMPD1-210ENST00000534405 KRTAP19-8Q3LI54 63 aa7.63□□□□□ -1.19
SMPD1-210ENST00000534405 KRTAP8-1Q8IUC2 63 aa7.59□□□□□ -1.19
SMPD1-210ENST00000534405 MT1BP07438 61 aa7.58□□□□□ -1.2
SMPD1-210ENST00000534405 KRTAP10-5P60370 271 aa7.52□□□□□ -1.21
SMPD1-210ENST00000534405 MT1XP80297 61 aa7.51□□□□□ -1.21
SMPD1-210ENST00000534405 KRTAP10-12P60413 245 aa7.45□□□□□ -1.22
SMPD1-210ENST00000534405 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
SMPD1-210ENST00000534405 KRTAP12-3P60328 96 aa7.32□□□□□ -1.24
SMPD1-210ENST00000534405 KRTAP10-7P60409 375 aaPredicted RBP7.31□□□□□ -1.24
SMPD1-210ENST00000534405 LCE2BO14633 110 aa7.19□□□□□ -1.26
SMPD1-210ENST00000534405 USH2AO75445 5202 aa7.13□□□□□ -1.27
SMPD1-210ENST00000534405 LCE2AQ5TA79 106 aaPredicted RBP7.05□□□□□ -1.28
SMPD1-210ENST00000534405 KMT2DO14686 5537 aa6.99□□□□□ -1.29
SMPD1-210ENST00000534405 KRTAP19-5Q3LI72 72 aa6.98□□□□□ -1.29
SMPD1-210ENST00000534405 LCE3CQ5T5A8 94 aa6.97□□□□□ -1.29
SMPD1-210ENST00000534405 KRTAP2-3P0C7H8 128 aa6.93□□□□□ -1.3
SMPD1-210ENST00000534405 KRTAP2-4Q9BYR9 128 aa6.93□□□□□ -1.3
SMPD1-210ENST00000534405 KRTAP2-1Q9BYU5 128 aa6.93□□□□□ -1.3
SMPD1-210ENST00000534405 KRTAP4-8A0A0G2JLE6 195 aa6.9□□□□□ -1.31
SMPD1-210ENST00000534405 KRTAP4-8Q9BYQ9 185 aa6.9□□□□□ -1.31
SMPD1-210ENST00000534405 KRTAP9-6A8MVA2 160 aa6.8□□□□□ -1.32
SMPD1-210ENST00000534405 KRTAP19-7Q3SYF9 63 aa6.7□□□□□ -1.34
SMPD1-210ENST00000534405 KRTAP4-7Q9BYR0 210 aa6.59□□□□□ -1.35
SMPD1-210ENST00000534405 SSPOA2VEC9 5147 aa6.59□□□□□ -1.35
SMPD1-210ENST00000534405 MT1EP04732 61 aa6.49□□□□□ -1.37
SMPD1-210ENST00000534405 MT1LQ93083 61 aa6.48□□□□□ -1.37
SMPD1-210ENST00000534405 FSIP2Q5CZC0 6907 aa6.42□□□□□ -1.38
SMPD1-210ENST00000534405 KRTAP19-6Q3LI70 58 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms