RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 A0A1B0GVY2 172 aa10.15□□□□□ -0.78
CAPN1-226ENST00000533820 C10orf95Q9H7T3 257 aa10.14□□□□□ -0.79
CAPN1-226ENST00000533820 COX6B2Q6YFQ2 88 aa10.13□□□□□ -0.79
CAPN1-226ENST00000533820 TPRXLQ17RH7 258 aa10.13□□□□□ -0.79
CAPN1-226ENST00000533820 PKHD1L1Q86WI1 4243 aa10.11□□□□□ -0.79
CAPN1-226ENST00000533820 MYCBP2O75592 4640 aa10.1□□□□□ -0.79
CAPN1-226ENST00000533820 KRTAP15-1Q3LI76 137 aa10.09□□□□□ -0.79
CAPN1-226ENST00000533820 KMT2CQ8NEZ4 4911 aaKnown RBP10.02□□□□□ -0.81
CAPN1-226ENST00000533820 A0A0D9SG42 100 aa10.01□□□□□ -0.81
CAPN1-226ENST00000533820 HSPG2P98160 4391 aa10□□□□□ -0.81
CAPN1-226ENST00000533820 KRTAP10-8P60410 259 aa9.96□□□□□ -0.82
CAPN1-226ENST00000533820 FAT3Q8TDW7 4589 aa9.94□□□□□ -0.82
CAPN1-226ENST00000533820 RYR2Q92736 4967 aa9.92□□□□□ -0.82
CAPN1-226ENST00000533820 KRTAP3-3Q9BYR6 98 aa9.91□□□□□ -0.82
CAPN1-226ENST00000533820 KRTAP13-4Q3LI77 160 aa9.9□□□□□ -0.82
CAPN1-226ENST00000533820 LUZP6Q538Z0 58 aa9.9□□□□□ -0.82
CAPN1-226ENST00000533820 Q5VSD8 79 aa9.88□□□□□ -0.83
CAPN1-226ENST00000533820 KRTAP10-6P60371 365 aaPredicted RBP9.88□□□□□ -0.83
CAPN1-226ENST00000533820 RPL37P61927 97 aaKnown RBP9.85□□□□□ -0.83
CAPN1-226ENST00000533820 XP32Q5T750 250 aa9.85□□□□□ -0.83
CAPN1-226ENST00000533820 TNXBP22105 4242 aa9.84□□□□□ -0.83
CAPN1-226ENST00000533820 S4R3F8 94 aa9.82□□□□□ -0.84
CAPN1-226ENST00000533820 KRTAP3-2Q9BYR7 98 aa9.79□□□□□ -0.84
CAPN1-226ENST00000533820 RYR3Q15413 4870 aa9.76□□□□□ -0.85
CAPN1-226ENST00000533820 KRTAP17-1Q9BYP8 105 aa9.75□□□□□ -0.85
CAPN1-226ENST00000533820 LPAP08519 4548 aa9.7□□□□□ -0.86
CAPN1-226ENST00000533820 KIAA1109Q2LD37 5005 aa9.68□□□□□ -0.86
CAPN1-226ENST00000533820 LRP2P98164 4655 aa9.63□□□□□ -0.87
CAPN1-226ENST00000533820 KRTAP12-2P59991 146 aa9.58□□□□□ -0.88
CAPN1-226ENST00000533820 RYR1P21817 5038 aa9.56□□□□□ -0.88
CAPN1-226ENST00000533820 MT1HL1P0DM35 61 aa9.56□□□□□ -0.88
CAPN1-226ENST00000533820 EPPK1P58107 5090 aaKnown RBP9.44□□□□□ -0.9
CAPN1-226ENST00000533820 KRTAP12-1P59990 96 aa9.43□□□□□ -0.9
CAPN1-226ENST00000533820 ABCA13Q86UQ4 5058 aa9.36□□□□□ -0.91
CAPN1-226ENST00000533820 M0QZ58 72 aa9.28□□□□□ -0.92
CAPN1-226ENST00000533820 KRTAP4-5Q9BYR2 181 aa9.25□□□□□ -0.93
CAPN1-226ENST00000533820 PLAC4Q8WY50 150 aa9.24□□□□□ -0.93
CAPN1-226ENST00000533820 R4GN34 69 aa9.2□□□□□ -0.94
CAPN1-226ENST00000533820 LORP23490 312 aaPredicted RBP9.14□□□□□ -0.95
CAPN1-226ENST00000533820 SEC61BP60468 96 aaKnown RBP9.13□□□□□ -0.95
CAPN1-226ENST00000533820 KRTAP4-1Q9BYQ7 146 aa9.05□□□□□ -0.96
CAPN1-226ENST00000533820 MUC2Q02817 5179 aa8.97□□□□□ -0.97
CAPN1-226ENST00000533820 MUC17Q685J3 4493 aa8.94□□□□□ -0.98
CAPN1-226ENST00000533820 J3QL48 77 aa8.93□□□□□ -0.98
CAPN1-226ENST00000533820 CAMK2N1Q7Z7J9 78 aa8.81□□□□□ -1
CAPN1-226ENST00000533820 HERC2O95714 4834 aa8.79□□□□□ -1
CAPN1-226ENST00000533820 BIRC6Q9NR09 4857 aa8.76□□□□□ -1.01
CAPN1-226ENST00000533820 KRTAP19-2Q3LHN2 52 aa8.72□□□□□ -1.01
CAPN1-226ENST00000533820 PCLOQ9Y6V0 5065 aa8.6□□□□□ -1.03
CAPN1-226ENST00000533820 HERC1Q15751 4861 aa8.52□□□□□ -1.05
CAPN1-226ENST00000533820 FAT4Q6V0I7 4981 aa8.5□□□□□ -1.05
CAPN1-226ENST00000533820 FLGP20930 4061 aaPredicted RBP8.49□□□□□ -1.05
CAPN1-226ENST00000533820 PRO2289Q9P1D8 64 aa8.43□□□□□ -1.06
CAPN1-226ENST00000533820 PP632Q6XCG6 107 aa8.42□□□□□ -1.06
CAPN1-226ENST00000533820 TNP1P09430 55 aa8.36□□□□□ -1.07
CAPN1-226ENST00000533820 M0R2T5 61 aa8.27□□□□□ -1.09
CAPN1-226ENST00000533820 RNF213Q63HN8 5207 aa8.27□□□□□ -1.09
CAPN1-226ENST00000533820 HMCN2Q8NDA2 5059 aa8.21□□□□□ -1.1
CAPN1-226ENST00000533820 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
CAPN1-226ENST00000533820 SPRR5A0A1B0GTR4 108 aa8.17□□□□□ -1.1
CAPN1-226ENST00000533820 KRTAP19-1Q8IUB9 90 aa8.12□□□□□ -1.11
CAPN1-226ENST00000533820 UBR4Q5T4S7 5183 aa8.09□□□□□ -1.11
CAPN1-226ENST00000533820 SPRR2GQ9BYE4 73 aa8.06□□□□□ -1.12
CAPN1-226ENST00000533820 KRTAP10-10P60014 251 aa8.04□□□□□ -1.12
CAPN1-226ENST00000533820 INE1O15225 51 aa8□□□□□ -1.13
CAPN1-226ENST00000533820 MT1HP80294 61 aa7.99□□□□□ -1.13
CAPN1-226ENST00000533820 LCE3AQ5TA76 89 aa7.98□□□□□ -1.13
CAPN1-226ENST00000533820 MT1FP04733 61 aa7.97□□□□□ -1.13
CAPN1-226ENST00000533820 KRTAP23-1A1A580 65 aa7.96□□□□□ -1.14
CAPN1-226ENST00000533820 MT2AP02795 61 aa7.92□□□□□ -1.14
CAPN1-226ENST00000533820 KRTAP9-8Q9BYQ0 159 aa7.81□□□□□ -1.16
CAPN1-226ENST00000533820 MT1BP07438 61 aa7.67□□□□□ -1.18
CAPN1-226ENST00000533820 KRTAP10-5P60370 271 aa7.67□□□□□ -1.18
CAPN1-226ENST00000533820 MT1XP80297 61 aa7.65□□□□□ -1.18
CAPN1-226ENST00000533820 KRTAP19-8Q3LI54 63 aa7.63□□□□□ -1.19
CAPN1-226ENST00000533820 KRTAP8-1Q8IUC2 63 aa7.6□□□□□ -1.19
CAPN1-226ENST00000533820 KRTAP10-12P60413 245 aa7.57□□□□□ -1.2
CAPN1-226ENST00000533820 KRTAP12-3P60328 96 aa7.55□□□□□ -1.2
CAPN1-226ENST00000533820 KRTAP10-7P60409 375 aaPredicted RBP7.55□□□□□ -1.2
CAPN1-226ENST00000533820 USH2AO75445 5202 aa7.46□□□□□ -1.22
CAPN1-226ENST00000533820 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
CAPN1-226ENST00000533820 KMT2DO14686 5537 aa7.39□□□□□ -1.23
CAPN1-226ENST00000533820 KRTAP19-5Q3LI72 72 aa7.24□□□□□ -1.25
CAPN1-226ENST00000533820 LCE2BO14633 110 aa7.23□□□□□ -1.25
CAPN1-226ENST00000533820 KRTAP4-8A0A0G2JLE6 195 aa7.16□□□□□ -1.26
CAPN1-226ENST00000533820 KRTAP4-8Q9BYQ9 185 aa7.16□□□□□ -1.26
CAPN1-226ENST00000533820 LCE3CQ5T5A8 94 aa7.07□□□□□ -1.28
CAPN1-226ENST00000533820 LCE2AQ5TA79 106 aaPredicted RBP6.99□□□□□ -1.29
CAPN1-226ENST00000533820 KRTAP4-7Q9BYR0 210 aa6.95□□□□□ -1.3
CAPN1-226ENST00000533820 KRTAP9-6A8MVA2 160 aa6.93□□□□□ -1.3
CAPN1-226ENST00000533820 FSIP2Q5CZC0 6907 aa6.87□□□□□ -1.31
CAPN1-226ENST00000533820 KRTAP19-7Q3SYF9 63 aa6.81□□□□□ -1.32
CAPN1-226ENST00000533820 MT1LQ93083 61 aa6.62□□□□□ -1.35
CAPN1-226ENST00000533820 SSPOA2VEC9 5147 aa6.61□□□□□ -1.35
CAPN1-226ENST00000533820 MT1EP04732 61 aa6.58□□□□□ -1.36
CAPN1-226ENST00000533820 KRTAP2-3P0C7H8 128 aa6.53□□□□□ -1.36
CAPN1-226ENST00000533820 KRTAP2-4Q9BYR9 128 aa6.53□□□□□ -1.36
CAPN1-226ENST00000533820 KRTAP2-1Q9BYU5 128 aa6.53□□□□□ -1.36
CAPN1-226ENST00000533820 KRTAP4-3Q9BYR4 195 aa6.48□□□□□ -1.37
CAPN1-226ENST00000533820 LOC100996750A0A140TA64 210 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms