RNA–Protein interactions for RNA: ENST00000531014.5

CTNND1-229, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-229ENST00000531014 SPENQ96T58 3664 aaKnown RBP3.11□□□□□ -1.91
CTNND1-229ENST00000531014 COL7A1Q02388 2944 aa3.11□□□□□ -1.91
CTNND1-229ENST00000531014 KRTAP9-2Q9BYQ4 174 aa3.11□□□□□ -1.91
CTNND1-229ENST00000531014 LCE3AQ5TA76 89 aa3.1□□□□□ -1.91
CTNND1-229ENST00000531014 LCE2AQ5TA79 106 aaPredicted RBP3.09□□□□□ -1.92
CTNND1-229ENST00000531014 CUBNO60494 3623 aa3.08□□□□□ -1.92
CTNND1-229ENST00000531014 LORP23490 312 aaPredicted RBP3.07□□□□□ -1.92
CTNND1-229ENST00000531014 MT1HP80294 61 aa3.07□□□□□ -1.92
CTNND1-229ENST00000531014 MUC3AQ02505 3323 aa3.07□□□□□ -1.92
CTNND1-229ENST00000531014 HERC2O95714 4834 aa3.06□□□□□ -1.92
CTNND1-229ENST00000531014 RYR1P21817 5038 aa3.06□□□□□ -1.92
CTNND1-229ENST00000531014 PLECQ15149 4684 aaKnown RBP3.06□□□□□ -1.92
CTNND1-229ENST00000531014 DNAH3Q8TD57 4116 aa3.06□□□□□ -1.92
CTNND1-229ENST00000531014 SMG1Q96Q15 3661 aaKnown RBP3.05□□□□□ -1.92
CTNND1-229ENST00000531014 DYNC1H1Q14204 4646 aaKnown RBP3.05□□□□□ -1.92
CTNND1-229ENST00000531014 PCLOQ9Y6V0 5065 aa3.04□□□□□ -1.92
CTNND1-229ENST00000531014 DNAH5Q8TE73 4624 aa3.03□□□□□ -1.93
CTNND1-229ENST00000531014 SRRM2Q9UQ35 2752 aaKnown RBP3.02□□□□□ -1.93
CTNND1-229ENST00000531014 HERC1Q15751 4861 aa3.01□□□□□ -1.93
CTNND1-229ENST00000531014 LCE2BO14633 110 aa3□□□□□ -1.93
CTNND1-229ENST00000531014 DNAH6Q9C0G6 4158 aa3□□□□□ -1.93
CTNND1-229ENST00000531014 CSMD1Q96PZ7 3565 aa3□□□□□ -1.93
CTNND1-229ENST00000531014 KRTAP8-1Q8IUC2 63 aa2.99□□□□□ -1.93
CTNND1-229ENST00000531014 RYR2Q92736 4967 aa2.99□□□□□ -1.93
CTNND1-229ENST00000531014 TRRAPQ9Y4A5 3859 aa2.98□□□□□ -1.93
CTNND1-229ENST00000531014 LAMA5O15230 3695 aa2.97□□□□□ -1.93
CTNND1-229ENST00000531014 RYR3Q15413 4870 aa2.96□□□□□ -1.94
CTNND1-229ENST00000531014 CSMD2Q7Z408 3487 aa2.96□□□□□ -1.94
CTNND1-229ENST00000531014 SVEP1Q4LDE5 3571 aa2.95□□□□□ -1.94
CTNND1-229ENST00000531014 DNAH17Q9UFH2 4485 aa2.95□□□□□ -1.94
CTNND1-229ENST00000531014 KRTAP10-7P60409 375 aaPredicted RBP2.93□□□□□ -1.94
CTNND1-229ENST00000531014 BSNQ9UPA5 3926 aa2.93□□□□□ -1.94
CTNND1-229ENST00000531014 VPS13DQ5THJ4 4388 aa2.93□□□□□ -1.94
CTNND1-229ENST00000531014 FAT2Q9NYQ8 4349 aa2.93□□□□□ -1.94
CTNND1-229ENST00000531014 MYCBP2O75592 4640 aa2.91□□□□□ -1.94
CTNND1-229ENST00000531014 PRKDCP78527 4128 aaKnown RBP2.9□□□□□ -1.94
CTNND1-229ENST00000531014 MT2AP02795 61 aa2.9□□□□□ -1.95
CTNND1-229ENST00000531014 PKHD1L1Q86WI1 4243 aa2.89□□□□□ -1.95
CTNND1-229ENST00000531014 LCE2CQ5TA81 110 aa2.88□□□□□ -1.95
CTNND1-229ENST00000531014 KRTAP9-7A8MTY7 169 aa2.87□□□□□ -1.95
CTNND1-229ENST00000531014 DNAH2Q9P225 4427 aa2.86□□□□□ -1.95
CTNND1-229ENST00000531014 SACSQ9NZJ4 4579 aa2.86□□□□□ -1.95
CTNND1-229ENST00000531014 SPRR2FQ96RM1 72 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 SPRR2EP22531 72 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 SPRR2BP35325 72 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 SPRR2AP35326 72 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 KRTAP4-1Q9BYQ7 146 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 KMT2CQ8NEZ4 4911 aaKnown RBP2.85□□□□□ -1.95
CTNND1-229ENST00000531014 KIAA1109Q2LD37 5005 aa2.85□□□□□ -1.95
CTNND1-229ENST00000531014 DNAH8Q96JB1 4490 aa2.82□□□□□ -1.96
CTNND1-229ENST00000531014 FAT3Q8TDW7 4589 aa2.81□□□□□ -1.96
CTNND1-229ENST00000531014 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
CTNND1-229ENST00000531014 FAT1Q14517 4588 aa2.8□□□□□ -1.96
CTNND1-229ENST00000531014 APOBP04114 4563 aaKnown RBP2.8□□□□□ -1.96
CTNND1-229ENST00000531014 KRTAP19-1Q8IUB9 90 aa2.8□□□□□ -1.96
CTNND1-229ENST00000531014 SPRR2DP22532 72 aa2.8□□□□□ -1.96
CTNND1-229ENST00000531014 STARD9Q9P2P6 4700 aa2.8□□□□□ -1.96
CTNND1-229ENST00000531014 HSPG2P98160 4391 aa2.79□□□□□ -1.96
CTNND1-229ENST00000531014 MT1FP04733 61 aa2.78□□□□□ -1.96
CTNND1-229ENST00000531014 KRTAP19-4Q3LI73 84 aa2.76□□□□□ -1.97
CTNND1-229ENST00000531014 ABCA13Q86UQ4 5058 aa2.75□□□□□ -1.97
CTNND1-229ENST00000531014 LCE3CQ5T5A8 94 aa2.74□□□□□ -1.97
CTNND1-229ENST00000531014 SPRR2GQ9BYE4 73 aa2.73□□□□□ -1.97
CTNND1-229ENST00000531014 KRTAP6-3Q3LI67 103 aa2.73□□□□□ -1.97
CTNND1-229ENST00000531014 ZNF469Q96JG9 3925 aaPredicted RBP2.72□□□□□ -1.97
CTNND1-229ENST00000531014 KRTAP12-4P60329 112 aa2.71□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.7□□□□□ -1.98
CTNND1-229ENST00000531014 HECTD4Q9Y4D8 3996 aa2.69□□□□□ -1.98
CTNND1-229ENST00000531014 VPS13BQ7Z7G8 4022 aa2.69□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP19-6Q3LI70 58 aa2.69□□□□□ -1.98
CTNND1-229ENST00000531014 DNAH7Q8WXX0 4024 aa2.68□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP19-5Q3LI72 72 aa2.68□□□□□ -1.98
CTNND1-229ENST00000531014 CMYA5Q8N3K9 4069 aa2.68□□□□□ -1.98
CTNND1-229ENST00000531014 KMT2AQ03164 3969 aa2.67□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP2-3P0C7H8 128 aa2.67□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP2-4Q9BYR9 128 aa2.67□□□□□ -1.98
CTNND1-229ENST00000531014 HYDINQ4G0P3 5121 aa2.66□□□□□ -1.98
CTNND1-229ENST00000531014 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
CTNND1-229ENST00000531014 FRAS1Q86XX4 4008 aa2.65□□□□□ -1.99
CTNND1-229ENST00000531014 KRTAP9-8Q9BYQ0 159 aa2.64□□□□□ -1.99
CTNND1-229ENST00000531014 EPPK1P58107 5090 aaKnown RBP2.63□□□□□ -1.99
CTNND1-229ENST00000531014 MT3P25713 68 aa2.63□□□□□ -1.99
CTNND1-229ENST00000531014 KRTAP9-3Q9BYQ3 159 aa2.63□□□□□ -1.99
CTNND1-229ENST00000531014 VPS13CQ709C8 3753 aa2.62□□□□□ -1.99
CTNND1-229ENST00000531014 LCE3BQ5TA77 95 aa2.62□□□□□ -1.99
CTNND1-229ENST00000531014 PKD1P98161 4303 aa2.6□□□□□ -1.99
CTNND1-229ENST00000531014 PKHD1P08F94 4074 aa2.58□□□□□ -2
CTNND1-229ENST00000531014 LOC100996750A0A140TA64 210 aa2.57□□□□□ -2
CTNND1-229ENST00000531014 KRTAP4-6Q9BYQ5 205 aa2.57□□□□□ -2
CTNND1-229ENST00000531014 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
CTNND1-229ENST00000531014 LRP1Q07954 4544 aaKnown RBP2.57□□□□□ -2
CTNND1-229ENST00000531014 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
CTNND1-229ENST00000531014 CSMD3Q7Z407 3707 aa2.55□□□□□ -2
CTNND1-229ENST00000531014 KRTAP2-2Q9BYT5 123 aa2.54□□□□□ -2
CTNND1-229ENST00000531014 KRTAP2-1Q9BYU5 128 aa2.54□□□□□ -2
CTNND1-229ENST00000531014 MUC17Q685J3 4493 aa2.54□□□□□ -2
CTNND1-229ENST00000531014 LRP2P98164 4655 aa2.53□□□□□ -2.01
CTNND1-229ENST00000531014 RNF213Q63HN8 5207 aa2.52□□□□□ -2.01
CTNND1-229ENST00000531014 LCE1AQ5T7P2 110 aa2.48□□□□□ -2.01
CTNND1-229ENST00000531014 MT1GP13640 62 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms