RNA–Protein interactions for RNA: ENST00000530886.5

CSDE1-214, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 3,459 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-214ENST00000530886 KRTAP13-4Q3LI77 160 aa4.25□□□□□ -1.73
CSDE1-214ENST00000530886 XP32Q5T750 250 aa4.23□□□□□ -1.73
CSDE1-214ENST00000530886 LRP1Q07954 4544 aaKnown RBP4.23□□□□□ -1.73
CSDE1-214ENST00000530886 KRTAP3-2Q9BYR7 98 aa4.22□□□□□ -1.73
CSDE1-214ENST00000530886 S4R3F8 94 aa4.22□□□□□ -1.73
CSDE1-214ENST00000530886 MGAM2Q2M2H8 2515 aa4.2□□□□□ -1.74
CSDE1-214ENST00000530886 J3QKU1 62 aa4.19□□□□□ -1.74
CSDE1-214ENST00000530886 FAT3Q8TDW7 4589 aa4.18□□□□□ -1.74
CSDE1-214ENST00000530886 DYNC1H1Q14204 4646 aaKnown RBP4.17□□□□□ -1.74
CSDE1-214ENST00000530886 KRTAP3-3Q9BYR6 98 aa4.17□□□□□ -1.74
CSDE1-214ENST00000530886 A0A0D9SG42 100 aa4.16□□□□□ -1.74
CSDE1-214ENST00000530886 KRTAP12-2P59991 146 aa4.15□□□□□ -1.74
CSDE1-214ENST00000530886 SEC61BP60468 96 aaKnown RBP4.14□□□□□ -1.75
CSDE1-214ENST00000530886 KRTAP12-1P59990 96 aa4.13□□□□□ -1.75
CSDE1-214ENST00000530886 FAT1Q14517 4588 aa4.11□□□□□ -1.75
CSDE1-214ENST00000530886 KRTAP10-2P60368 255 aa4.09□□□□□ -1.75
CSDE1-214ENST00000530886 PLAC4Q8WY50 150 aa4.08□□□□□ -1.76
CSDE1-214ENST00000530886 LPAP08519 4548 aa4.07□□□□□ -1.76
CSDE1-214ENST00000530886 BIRC6Q9NR09 4857 aa4.06□□□□□ -1.76
CSDE1-214ENST00000530886 C9orf92A6NGG3 77 aa4.04□□□□□ -1.76
CSDE1-214ENST00000530886 KRTAP10-1P60331 282 aa4.04□□□□□ -1.76
CSDE1-214ENST00000530886 RYR3Q15413 4870 aa4.03□□□□□ -1.76
CSDE1-214ENST00000530886 M0QZ58 72 aa4.02□□□□□ -1.77
CSDE1-214ENST00000530886 KRTAP17-1Q9BYP8 105 aa4.02□□□□□ -1.77
CSDE1-214ENST00000530886 PCLOQ9Y6V0 5065 aa3.98□□□□□ -1.77
CSDE1-214ENST00000530886 KRTAP10-4P60372 401 aaPredicted RBP3.97□□□□□ -1.77
CSDE1-214ENST00000530886 KRTAP10-8P60410 259 aa3.94□□□□□ -1.78
CSDE1-214ENST00000530886 CAMK2N1Q7Z7J9 78 aa3.93□□□□□ -1.78
CSDE1-214ENST00000530886 PP632Q6XCG6 107 aa3.92□□□□□ -1.78
CSDE1-214ENST00000530886 KMT2CQ8NEZ4 4911 aaKnown RBP3.91□□□□□ -1.78
CSDE1-214ENST00000530886 HERC2O95714 4834 aa3.86□□□□□ -1.79
CSDE1-214ENST00000530886 SPRR5A0A1B0GTR4 108 aa3.86□□□□□ -1.79
CSDE1-214ENST00000530886 J3QL48 77 aa3.85□□□□□ -1.79
CSDE1-214ENST00000530886 PRO2289Q9P1D8 64 aa3.84□□□□□ -1.79
CSDE1-214ENST00000530886 MUC17Q685J3 4493 aa3.82□□□□□ -1.8
CSDE1-214ENST00000530886 LRP2P98164 4655 aa3.82□□□□□ -1.8
CSDE1-214ENST00000530886 DMBT1Q9UGM3 2413 aaPredicted RBP3.82□□□□□ -1.8
CSDE1-214ENST00000530886 EPPK1P58107 5090 aaKnown RBP3.81□□□□□ -1.8
CSDE1-214ENST00000530886 RYR2Q92736 4967 aa3.81□□□□□ -1.8
CSDE1-214ENST00000530886 KRTAP23-1A1A580 65 aa3.76□□□□□ -1.81
CSDE1-214ENST00000530886 FLGP20930 4061 aaPredicted RBP3.75□□□□□ -1.81
CSDE1-214ENST00000530886 INE1O15225 51 aa3.73□□□□□ -1.81
CSDE1-214ENST00000530886 R4GN34 69 aa3.72□□□□□ -1.81
CSDE1-214ENST00000530886 A0A1B0GVY2 172 aa3.71□□□□□ -1.82
CSDE1-214ENST00000530886 RYR1P21817 5038 aa3.71□□□□□ -1.82
CSDE1-214ENST00000530886 ABCA13Q86UQ4 5058 aa3.69□□□□□ -1.82
CSDE1-214ENST00000530886 SMR3BP02814 79 aaPredicted RBP3.68□□□□□ -1.82
CSDE1-214ENST00000530886 LORP23490 312 aaPredicted RBP3.65□□□□□ -1.83
CSDE1-214ENST00000530886 Q5VSD8 79 aa3.56□□□□□ -1.84
CSDE1-214ENST00000530886 KRTAP19-2Q3LHN2 52 aa3.56□□□□□ -1.84
CSDE1-214ENST00000530886 TNP1P09430 55 aa3.55□□□□□ -1.84
CSDE1-214ENST00000530886 HERC1Q15751 4861 aa3.54□□□□□ -1.84
CSDE1-214ENST00000530886 MT1HL1P0DM35 61 aa3.54□□□□□ -1.84
CSDE1-214ENST00000530886 KIAA1109Q2LD37 5005 aa3.47□□□□□ -1.85
CSDE1-214ENST00000530886 MUC2Q02817 5179 aa3.43□□□□□ -1.86
CSDE1-214ENST00000530886 KRTAP4-1Q9BYQ7 146 aa3.42□□□□□ -1.86
CSDE1-214ENST00000530886 UBR4Q5T4S7 5183 aa3.4□□□□□ -1.87
CSDE1-214ENST00000530886 LCE2DQ5TA82 110 aaPredicted RBP3.31□□□□□ -1.88
CSDE1-214ENST00000530886 KRTAP9-6A0A140TA67 174 aa3.3□□□□□ -1.88
CSDE1-214ENST00000530886 KRTAP8-1Q8IUC2 63 aa3.29□□□□□ -1.88
CSDE1-214ENST00000530886 LCE3AQ5TA76 89 aa3.29□□□□□ -1.88
CSDE1-214ENST00000530886 KRTAP10-10P60014 251 aa3.24□□□□□ -1.89
CSDE1-214ENST00000530886 FAT4Q6V0I7 4981 aa3.24□□□□□ -1.89
CSDE1-214ENST00000530886 KRTAP10-12P60413 245 aa3.23□□□□□ -1.89
CSDE1-214ENST00000530886 SPRR2GQ9BYE4 73 aa3.21□□□□□ -1.9
CSDE1-214ENST00000530886 KRTAP19-1Q8IUB9 90 aa3.2□□□□□ -1.9
CSDE1-214ENST00000530886 HMCN2Q8NDA2 5059 aa3.19□□□□□ -1.9
CSDE1-214ENST00000530886 KRTAP9-2Q9BYQ4 174 aa3.16□□□□□ -1.9
CSDE1-214ENST00000530886 KRTAP4-5Q9BYR2 181 aa3.14□□□□□ -1.91
CSDE1-214ENST00000530886 KRTAP12-3P60328 96 aa3.13□□□□□ -1.91
CSDE1-214ENST00000530886 KRTAP10-5P60370 271 aa3.13□□□□□ -1.91
CSDE1-214ENST00000530886 LCE2CQ5TA81 110 aa3.13□□□□□ -1.91
CSDE1-214ENST00000530886 RNF213Q63HN8 5207 aa3.08□□□□□ -1.92
CSDE1-214ENST00000530886 KRTAP2-3P0C7H8 128 aa3.04□□□□□ -1.92
CSDE1-214ENST00000530886 KRTAP2-4Q9BYR9 128 aa3.04□□□□□ -1.92
CSDE1-214ENST00000530886 KRTAP2-1Q9BYU5 128 aa3.04□□□□□ -1.92
CSDE1-214ENST00000530886 MT1XP80297 61 aa3.03□□□□□ -1.92
CSDE1-214ENST00000530886 KRTAP19-8Q3LI54 63 aa3.02□□□□□ -1.93
CSDE1-214ENST00000530886 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
CSDE1-214ENST00000530886 MT1BP07438 61 aa2.98□□□□□ -1.93
CSDE1-214ENST00000530886 MT1FP04733 61 aa2.97□□□□□ -1.93
CSDE1-214ENST00000530886 KRTAP9-6A8MVA2 160 aa2.96□□□□□ -1.94
CSDE1-214ENST00000530886 KRTAP9-8Q9BYQ0 159 aa2.96□□□□□ -1.94
CSDE1-214ENST00000530886 KRTAP10-7P60409 375 aaPredicted RBP2.95□□□□□ -1.94
CSDE1-214ENST00000530886 MT2AP02795 61 aa2.94□□□□□ -1.94
CSDE1-214ENST00000530886 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
CSDE1-214ENST00000530886 MT1HP80294 61 aa2.91□□□□□ -1.94
CSDE1-214ENST00000530886 KMT2DO14686 5537 aa2.89□□□□□ -1.95
CSDE1-214ENST00000530886 KRTAP19-4Q3LI73 84 aa2.87□□□□□ -1.95
CSDE1-214ENST00000530886 CRCT1Q9UGL9 99 aa2.86□□□□□ -1.95
CSDE1-214ENST00000530886 LCE2AQ5TA79 106 aaPredicted RBP2.85□□□□□ -1.95
CSDE1-214ENST00000530886 KRTAP19-5Q3LI72 72 aa2.85□□□□□ -1.95
CSDE1-214ENST00000530886 KRTAP9-7A8MTY7 169 aa2.84□□□□□ -1.95
CSDE1-214ENST00000530886 KRTAP9-3Q9BYQ3 159 aa2.81□□□□□ -1.96
CSDE1-214ENST00000530886 M0R2T5 61 aa2.8□□□□□ -1.96
CSDE1-214ENST00000530886 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.77□□□□□ -1.97
CSDE1-214ENST00000530886 LCE2BO14633 110 aa2.77□□□□□ -1.97
CSDE1-214ENST00000530886 USH2AO75445 5202 aa2.75□□□□□ -1.97
CSDE1-214ENST00000530886 KRTAP19-7Q3SYF9 63 aa2.73□□□□□ -1.97
CSDE1-214ENST00000530886 KRTAP4-7Q9BYR0 210 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms