RNA–Protein interactions for RNA: ENST00000528516.5

LTBP3-210, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 1 (best)

Gene LTBP3, Length 3,935 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-210ENST00000528516 DNAH5Q8TE73 4624 aa9.36□□□□□ -0.91
LTBP3-210ENST00000528516 RPS29P62273 56 aaKnown RBP9.31□□□□□ -0.92
LTBP3-210ENST00000528516 SACSQ9NZJ4 4579 aa9.29□□□□□ -0.92
LTBP3-210ENST00000528516 A0A1B0GVY2 172 aa9.29□□□□□ -0.92
LTBP3-210ENST00000528516 PKHD1P08F94 4074 aa9.27□□□□□ -0.93
LTBP3-210ENST00000528516 KMT2CQ8NEZ4 4911 aaKnown RBP9.24□□□□□ -0.93
LTBP3-210ENST00000528516 KRTAP13-4Q3LI77 160 aa9.24□□□□□ -0.93
LTBP3-210ENST00000528516 FAT1Q14517 4588 aa9.23□□□□□ -0.93
LTBP3-210ENST00000528516 XP32Q5T750 250 aa9.23□□□□□ -0.93
LTBP3-210ENST00000528516 SEC61BP60468 96 aaKnown RBP9.23□□□□□ -0.93
LTBP3-210ENST00000528516 FAT2Q9NYQ8 4349 aa9.21□□□□□ -0.93
LTBP3-210ENST00000528516 DYNC1H1Q14204 4646 aaKnown RBP9.2□□□□□ -0.94
LTBP3-210ENST00000528516 VPS13BQ7Z7G8 4022 aa9.18□□□□□ -0.94
LTBP3-210ENST00000528516 PKD1P98161 4303 aa9.15□□□□□ -0.95
LTBP3-210ENST00000528516 KRTAP15-1Q3LI76 137 aa9.14□□□□□ -0.95
LTBP3-210ENST00000528516 KRTAP10-6P60371 365 aaPredicted RBP9.14□□□□□ -0.95
LTBP3-210ENST00000528516 LUZP6Q538Z0 58 aa9.12□□□□□ -0.95
LTBP3-210ENST00000528516 A0A0A0MQY5 61 aa9.09□□□□□ -0.95
LTBP3-210ENST00000528516 RYR2Q92736 4967 aa9.07□□□□□ -0.96
LTBP3-210ENST00000528516 KRTAP12-2P59991 146 aa9.06□□□□□ -0.96
LTBP3-210ENST00000528516 KRTAP10-8P60410 259 aa9□□□□□ -0.97
LTBP3-210ENST00000528516 KRTAP10-4P60372 401 aaPredicted RBP8.97□□□□□ -0.97
LTBP3-210ENST00000528516 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
LTBP3-210ENST00000528516 APOBP04114 4563 aaKnown RBP8.95□□□□□ -0.98
LTBP3-210ENST00000528516 KRTAP3-3Q9BYR6 98 aa8.95□□□□□ -0.98
LTBP3-210ENST00000528516 KIAA1109Q2LD37 5005 aa8.91□□□□□ -0.98
LTBP3-210ENST00000528516 RYR3Q15413 4870 aa8.9□□□□□ -0.98
LTBP3-210ENST00000528516 KRTAP12-1P59990 96 aa8.89□□□□□ -0.99
LTBP3-210ENST00000528516 MYCBP2O75592 4640 aa8.87□□□□□ -0.99
LTBP3-210ENST00000528516 LRP1Q07954 4544 aaKnown RBP8.86□□□□□ -0.99
LTBP3-210ENST00000528516 KRTAP17-1Q9BYP8 105 aa8.79□□□□□ -1
LTBP3-210ENST00000528516 PLAC4Q8WY50 150 aa8.77□□□□□ -1.01
LTBP3-210ENST00000528516 KRTAP4-5Q9BYR2 181 aa8.72□□□□□ -1.01
LTBP3-210ENST00000528516 EPPK1P58107 5090 aaKnown RBP8.68□□□□□ -1.02
LTBP3-210ENST00000528516 RYR1P21817 5038 aa8.68□□□□□ -1.02
LTBP3-210ENST00000528516 HSPG2P98160 4391 aa8.67□□□□□ -1.02
LTBP3-210ENST00000528516 FAT3Q8TDW7 4589 aa8.62□□□□□ -1.03
LTBP3-210ENST00000528516 MT1HL1P0DM35 61 aa8.6□□□□□ -1.03
LTBP3-210ENST00000528516 TNP1P09430 55 aa8.52□□□□□ -1.05
LTBP3-210ENST00000528516 PKHD1L1Q86WI1 4243 aa8.5□□□□□ -1.05
LTBP3-210ENST00000528516 KRTAP10-10P60014 251 aa8.38□□□□□ -1.07
LTBP3-210ENST00000528516 TNXBP22105 4242 aa8.36□□□□□ -1.07
LTBP3-210ENST00000528516 HERC2O95714 4834 aa8.29□□□□□ -1.08
LTBP3-210ENST00000528516 LRP2P98164 4655 aa8.27□□□□□ -1.09
LTBP3-210ENST00000528516 ABCA13Q86UQ4 5058 aa8.25□□□□□ -1.09
LTBP3-210ENST00000528516 PP632Q6XCG6 107 aa8.25□□□□□ -1.09
LTBP3-210ENST00000528516 LPAP08519 4548 aa8.24□□□□□ -1.09
LTBP3-210ENST00000528516 LORP23490 312 aaPredicted RBP8.21□□□□□ -1.09
LTBP3-210ENST00000528516 BIRC6Q9NR09 4857 aa8.1□□□□□ -1.11
LTBP3-210ENST00000528516 KRTAP4-1Q9BYQ7 146 aa7.94□□□□□ -1.14
LTBP3-210ENST00000528516 HERC1Q15751 4861 aa7.93□□□□□ -1.14
LTBP3-210ENST00000528516 MUC2Q02817 5179 aa7.86□□□□□ -1.15
LTBP3-210ENST00000528516 PCLOQ9Y6V0 5065 aa7.86□□□□□ -1.15
LTBP3-210ENST00000528516 PRO2289Q9P1D8 64 aa7.63□□□□□ -1.19
LTBP3-210ENST00000528516 RNF213Q63HN8 5207 aa7.62□□□□□ -1.19
LTBP3-210ENST00000528516 HMCN2Q8NDA2 5059 aa7.55□□□□□ -1.2
LTBP3-210ENST00000528516 SPRR5A0A1B0GTR4 108 aa7.54□□□□□ -1.2
LTBP3-210ENST00000528516 UBR4Q5T4S7 5183 aa7.53□□□□□ -1.2
LTBP3-210ENST00000528516 MUC17Q685J3 4493 aa7.52□□□□□ -1.21
LTBP3-210ENST00000528516 FAT4Q6V0I7 4981 aa7.51□□□□□ -1.21
LTBP3-210ENST00000528516 KRTAP23-1A1A580 65 aa7.48□□□□□ -1.21
LTBP3-210ENST00000528516 LCE3AQ5TA76 89 aa7.48□□□□□ -1.21
LTBP3-210ENST00000528516 INE1O15225 51 aa7.41□□□□□ -1.22
LTBP3-210ENST00000528516 KRTAP19-2Q3LHN2 52 aa7.41□□□□□ -1.22
LTBP3-210ENST00000528516 KRTAP10-12P60413 245 aa7.36□□□□□ -1.23
LTBP3-210ENST00000528516 FSIP2Q5CZC0 6907 aa7.32□□□□□ -1.24
LTBP3-210ENST00000528516 KRTAP12-3P60328 96 aa7.29□□□□□ -1.24
LTBP3-210ENST00000528516 LCE2CQ5TA81 110 aa7.28□□□□□ -1.24
LTBP3-210ENST00000528516 MT1HP80294 61 aa7.26□□□□□ -1.25
LTBP3-210ENST00000528516 FLGP20930 4061 aaPredicted RBP7.25□□□□□ -1.25
LTBP3-210ENST00000528516 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
LTBP3-210ENST00000528516 MT1FP04733 61 aa7.19□□□□□ -1.26
LTBP3-210ENST00000528516 MT2AP02795 61 aa7.18□□□□□ -1.26
LTBP3-210ENST00000528516 OBSCNQ5VST9 7968 aa7.1□□□□□ -1.27
LTBP3-210ENST00000528516 KRTAP19-1Q8IUB9 90 aa7.03□□□□□ -1.28
LTBP3-210ENST00000528516 SPRR2GQ9BYE4 73 aa7.03□□□□□ -1.28
LTBP3-210ENST00000528516 KRTAP8-1Q8IUC2 63 aa6.96□□□□□ -1.3
LTBP3-210ENST00000528516 KRTAP9-8Q9BYQ0 159 aa6.95□□□□□ -1.3
LTBP3-210ENST00000528516 SYNE1Q8NF91 8797 aaKnown RBP6.84□□□□□ -1.31
LTBP3-210ENST00000528516 KRTAP10-7P60409 375 aaPredicted RBP6.83□□□□□ -1.32
LTBP3-210ENST00000528516 KRTAP19-5Q3LI72 72 aa6.76□□□□□ -1.33
LTBP3-210ENST00000528516 KRTAP4-8A0A0G2JLE6 195 aa6.67□□□□□ -1.34
LTBP3-210ENST00000528516 KRTAP4-8Q9BYQ9 185 aa6.67□□□□□ -1.34
LTBP3-210ENST00000528516 MT1XP80297 61 aa6.67□□□□□ -1.34
LTBP3-210ENST00000528516 KRTAP9-3Q9BYQ3 159 aa6.66□□□□□ -1.34
LTBP3-210ENST00000528516 MT1BP07438 61 aa6.66□□□□□ -1.34
LTBP3-210ENST00000528516 USH2AO75445 5202 aa6.64□□□□□ -1.35
LTBP3-210ENST00000528516 KRTAP10-5P60370 271 aa6.64□□□□□ -1.35
LTBP3-210ENST00000528516 KRTAP19-8Q3LI54 63 aa6.59□□□□□ -1.35
LTBP3-210ENST00000528516 LCE2AQ5TA79 106 aaPredicted RBP6.57□□□□□ -1.36
LTBP3-210ENST00000528516 DSTQ03001 7570 aaKnown RBP6.55□□□□□ -1.36
LTBP3-210ENST00000528516 LCE2BO14633 110 aa6.55□□□□□ -1.36
LTBP3-210ENST00000528516 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
LTBP3-210ENST00000528516 KRTAP4-7Q9BYR0 210 aa6.44□□□□□ -1.38
LTBP3-210ENST00000528516 KMT2DO14686 5537 aa6.42□□□□□ -1.38
LTBP3-210ENST00000528516 FCGBPQ9Y6R7 5405 aaPredicted RBP6.41□□□□□ -1.38
LTBP3-210ENST00000528516 SPRR2FQ96RM1 72 aa6.3□□□□□ -1.4
LTBP3-210ENST00000528516 KRTAP9-6A8MVA2 160 aa6.25□□□□□ -1.41
LTBP3-210ENST00000528516 MT1GP13640 62 aa6.17□□□□□ -1.42
LTBP3-210ENST00000528516 KRTAP2-3P0C7H8 128 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms