RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SPRR2AP35326 72 aa10.04□□□□□ -0.8
CPSF1-202ENST00000527827 CYP4F30PQ9H0H9 118 aa10.01□□□□□ -0.81
CPSF1-202ENST00000527827 SPCS1Q9Y6A9 102 aa9.97□□□□□ -0.81
CPSF1-202ENST00000527827 MT1XP80297 61 aa9.93□□□□□ -0.82
CPSF1-202ENST00000527827 H0YAA0 97 aa9.92□□□□□ -0.82
CPSF1-202ENST00000527827 PRO2289Q9P1D8 64 aa9.9□□□□□ -0.82
CPSF1-202ENST00000527827 PRO0461Q9UI25 63 aa9.89□□□□□ -0.83
CPSF1-202ENST00000527827 LCE1AQ5T7P2 110 aa9.87□□□□□ -0.83
CPSF1-202ENST00000527827 KRTAP8-1Q8IUC2 63 aa9.87□□□□□ -0.83
CPSF1-202ENST00000527827 KRTAP2-2Q9BYT5 123 aa9.86□□□□□ -0.83
CPSF1-202ENST00000527827 KRTAP2-1Q9BYU5 128 aa9.86□□□□□ -0.83
CPSF1-202ENST00000527827 NDUFC1O43677 76 aa9.84□□□□□ -0.83
CPSF1-202ENST00000527827 LOC101927531A0A1B0GV80 90 aa9.83□□□□□ -0.84
CPSF1-202ENST00000527827 A8MUN3 132 aa9.83□□□□□ -0.84
CPSF1-202ENST00000527827 K7EP34 96 aa9.83□□□□□ -0.84
CPSF1-202ENST00000527827 TRAV22A0A0B4J277 110 aa9.82□□□□□ -0.84
CPSF1-202ENST00000527827 ADM2Q7Z4H4 148 aa9.79□□□□□ -0.84
CPSF1-202ENST00000527827 KRTAP12-2P59991 146 aa9.76□□□□□ -0.85
CPSF1-202ENST00000527827 PLAC4Q8WY50 150 aa9.74□□□□□ -0.85
CPSF1-202ENST00000527827 SPRR2DP22532 72 aa9.71□□□□□ -0.86
CPSF1-202ENST00000527827 KRTAP4-8A0A0G2JLE6 195 aa9.67□□□□□ -0.86
CPSF1-202ENST00000527827 KRTAP4-8Q9BYQ9 185 aa9.67□□□□□ -0.86
CPSF1-202ENST00000527827 ACYP1P07311 99 aa9.64□□□□□ -0.87
CPSF1-202ENST00000527827 H0Y9P7 68 aa9.6□□□□□ -0.87
CPSF1-202ENST00000527827 COL5A1-AS1Q5SY13 56 aa9.6□□□□□ -0.87
CPSF1-202ENST00000527827 UQCRQO14949 82 aa9.58□□□□□ -0.88
CPSF1-202ENST00000527827 ATOX1O00244 68 aa9.57□□□□□ -0.88
CPSF1-202ENST00000527827 R4GN34 69 aa9.57□□□□□ -0.88
CPSF1-202ENST00000527827 ETDBQ3ZM63 59 aa9.56□□□□□ -0.88
CPSF1-202ENST00000527827 P0C880 135 aa9.54□□□□□ -0.88
CPSF1-202ENST00000527827 LOC105371267A0A1B0GV96 52 aa9.53□□□□□ -0.88
CPSF1-202ENST00000527827 F8W1H4 67 aa9.5□□□□□ -0.89
CPSF1-202ENST00000527827 LCE3BQ5TA77 95 aa9.49□□□□□ -0.89
CPSF1-202ENST00000527827 M0QZ58 72 aa9.48□□□□□ -0.89
CPSF1-202ENST00000527827 KRTAP10-7P60409 375 aaPredicted RBP9.47□□□□□ -0.89
CPSF1-202ENST00000527827 GTF2H5Q6ZYL4 71 aa9.46□□□□□ -0.9
CPSF1-202ENST00000527827 HIST1H4AP62805 103 aaKnown RBP9.43□□□□□ -0.9
CPSF1-202ENST00000527827 C20orf197Q8N268 126 aa9.43□□□□□ -0.9
CPSF1-202ENST00000527827 KRTAP10-12P60413 245 aa9.41□□□□□ -0.9
CPSF1-202ENST00000527827 LINC00208Q96KT6 92 aa9.4□□□□□ -0.9
CPSF1-202ENST00000527827 ATP5EP2Q5VTU8 51 aa9.39□□□□□ -0.91
CPSF1-202ENST00000527827 KRTAP3-2Q9BYR7 98 aa9.38□□□□□ -0.91
CPSF1-202ENST00000527827 LINC01554Q52M75 96 aa9.37□□□□□ -0.91
CPSF1-202ENST00000527827 FAM240AA0A1B0GVK7 77 aa9.27□□□□□ -0.93
CPSF1-202ENST00000527827 MP68P56378 58 aa9.23□□□□□ -0.93
CPSF1-202ENST00000527827 OCR1Q9BZK8 76 aa9.22□□□□□ -0.93
CPSF1-202ENST00000527827 DMAC1Q96GE9 116 aa9.19□□□□□ -0.94
CPSF1-202ENST00000527827 GPR98Q8WXG9 6306 aa9.13□□□□□ -0.95
CPSF1-202ENST00000527827 LINC00643Q86TS7 51 aa9.11□□□□□ -0.95
CPSF1-202ENST00000527827 H3BPC8 53 aa9.05□□□□□ -0.96
CPSF1-202ENST00000527827 MT-ATP8P03928 68 aa9.05□□□□□ -0.96
CPSF1-202ENST00000527827 DSTQ03001 7570 aaKnown RBP9.03□□□□□ -0.96
CPSF1-202ENST00000527827 KRTAP4-9Q9BYQ8 210 aa8.98□□□□□ -0.97
CPSF1-202ENST00000527827 TRAV7A0A075B6U4 112 aa8.96□□□□□ -0.98
CPSF1-202ENST00000527827 PCP4L1A6NKN8 68 aa8.95□□□□□ -0.98
CPSF1-202ENST00000527827 LCE5AQ5TCM9 118 aa8.95□□□□□ -0.98
CPSF1-202ENST00000527827 KRTAP19-7Q3SYF9 63 aa8.88□□□□□ -0.99
CPSF1-202ENST00000527827 ACYP2P14621 99 aa8.84□□□□□ -0.99
CPSF1-202ENST00000527827 KRTAP19-3Q7Z4W3 81 aa8.84□□□□□ -0.99
CPSF1-202ENST00000527827 MT1EP04732 61 aa8.82□□□□□ -1
CPSF1-202ENST00000527827 SPTSSBQ8NFR3 76 aa8.81□□□□□ -1
CPSF1-202ENST00000527827 SCGB1A1P11684 91 aa8.77□□□□□ -1.01
CPSF1-202ENST00000527827 KRTAP13-4Q3LI77 160 aa8.72□□□□□ -1.01
CPSF1-202ENST00000527827 LCE1DQ5T752 114 aa8.72□□□□□ -1.01
CPSF1-202ENST00000527827 CAMK2N1Q7Z7J9 78 aa8.71□□□□□ -1.02
CPSF1-202ENST00000527827 CHKB-CPT1BH3BT56 60 aa8.65□□□□□ -1.02
CPSF1-202ENST00000527827 CYSTM1Q9H1C7 97 aa8.65□□□□□ -1.02
CPSF1-202ENST00000527827 MT1GP13640 62 aa8.56□□□□□ -1.04
CPSF1-202ENST00000527827 HMCN1Q96RW7 5635 aa8.56□□□□□ -1.04
CPSF1-202ENST00000527827 LCE4AQ5TA78 99 aa8.55□□□□□ -1.04
CPSF1-202ENST00000527827 MT4P47944 62 aa8.54□□□□□ -1.04
CPSF1-202ENST00000527827 KRTAP19-5Q3LI72 72 aa8.52□□□□□ -1.05
CPSF1-202ENST00000527827 A0A0D9SG42 100 aa8.48□□□□□ -1.05
CPSF1-202ENST00000527827 PP632Q6XCG6 107 aa8.46□□□□□ -1.06
CPSF1-202ENST00000527827 J3QR89 54 aa8.45□□□□□ -1.06
CPSF1-202ENST00000527827 MT1MQ8N339 61 aa8.44□□□□□ -1.06
CPSF1-202ENST00000527827 AHNAK2Q8IVF2 5795 aa8.44□□□□□ -1.06
CPSF1-202ENST00000527827 A0A1B0GV90 55 aa8.43□□□□□ -1.06
CPSF1-202ENST00000527827 SMIM20Q8N5G0 67 aa8.39□□□□□ -1.07
CPSF1-202ENST00000527827 SNURFQ9Y675 71 aa8.36□□□□□ -1.07
CPSF1-202ENST00000527827 KRTAP5-10Q6L8G5 202 aa8.35□□□□□ -1.07
CPSF1-202ENST00000527827 MT1LQ93083 61 aa8.35□□□□□ -1.07
CPSF1-202ENST00000527827 KRTAP5-4Q6L8H1 288 aa8.34□□□□□ -1.07
CPSF1-202ENST00000527827 SPANXA2-OT1Q8N9U9 137 aa8.31□□□□□ -1.08
CPSF1-202ENST00000527827 KRTAP4-6Q9BYQ5 205 aa8.28□□□□□ -1.08
CPSF1-202ENST00000527827 KRTAP4-3Q9BYR4 195 aa8.28□□□□□ -1.08
CPSF1-202ENST00000527827 SPINT4Q6UDR6 99 aa8.25□□□□□ -1.09
CPSF1-202ENST00000527827 SPATA8Q6RVD6 105 aa8.24□□□□□ -1.09
CPSF1-202ENST00000527827 KRTAP12-1P59990 96 aa8.19□□□□□ -1.1
CPSF1-202ENST00000527827 SERP1Q9Y6X1 66 aa8.14□□□□□ -1.11
CPSF1-202ENST00000527827 SEC61GP60059 68 aa8.12□□□□□ -1.11
CPSF1-202ENST00000527827 COA5Q86WW8 74 aa8.12□□□□□ -1.11
CPSF1-202ENST00000527827 C10orf95Q9H7T3 257 aa8.1□□□□□ -1.11
CPSF1-202ENST00000527827 KRTAP5-7Q6L8G8 165 aa8.09□□□□□ -1.11
CPSF1-202ENST00000527827 A0A1B0GU33 70 aa8.08□□□□□ -1.12
CPSF1-202ENST00000527827 LCE3AQ5TA76 89 aa8.07□□□□□ -1.12
CPSF1-202ENST00000527827 KRTAP5-3Q6L8H2 238 aa8.04□□□□□ -1.12
CPSF1-202ENST00000527827 SERP2Q8N6R1 65 aa7.97□□□□□ -1.13
CPSF1-202ENST00000527827 KRTAP4-7Q9BYR0 210 aa7.94□□□□□ -1.14
CPSF1-202ENST00000527827 TNP1P09430 55 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms