RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SPRR2GQ9BYE4 73 aa9.33□□□□□ -0.92
VPS28-206ENST00000526734 A8MUN3 132 aa9.32□□□□□ -0.92
VPS28-206ENST00000526734 MACF1Q9UPN3 7388 aaKnown RBP9.31□□□□□ -0.92
VPS28-206ENST00000526734 MP68P56378 58 aa9.3□□□□□ -0.92
VPS28-206ENST00000526734 NDUFC1O43677 76 aa9.28□□□□□ -0.92
VPS28-206ENST00000526734 Q5VV11 94 aa9.28□□□□□ -0.92
VPS28-206ENST00000526734 LINC00208Q96KT6 92 aa9.28□□□□□ -0.92
VPS28-206ENST00000526734 OCR1Q9BZK8 76 aa9.28□□□□□ -0.92
VPS28-206ENST00000526734 IMUPQ9GZP8 106 aa9.27□□□□□ -0.93
VPS28-206ENST00000526734 CRIPTQ9P021 101 aa9.27□□□□□ -0.93
VPS28-206ENST00000526734 KRTAP19-8Q3LI54 63 aa9.26□□□□□ -0.93
VPS28-206ENST00000526734 H0YAA0 97 aa9.22□□□□□ -0.93
VPS28-206ENST00000526734 MT1BP07438 61 aa9.22□□□□□ -0.93
VPS28-206ENST00000526734 H3BPC8 53 aa9.2□□□□□ -0.94
VPS28-206ENST00000526734 SYNE2Q8WXH0 6885 aaKnown RBP9.14□□□□□ -0.95
VPS28-206ENST00000526734 A6NN06 94 aa9.14□□□□□ -0.95
VPS28-206ENST00000526734 SCGB1A1P11684 91 aa9.12□□□□□ -0.95
VPS28-206ENST00000526734 KRTAP6-3Q3LI67 103 aa9.07□□□□□ -0.96
VPS28-206ENST00000526734 KRTAP10-5P60370 271 aa9.04□□□□□ -0.96
VPS28-206ENST00000526734 ADM2Q7Z4H4 148 aa9.02□□□□□ -0.97
VPS28-206ENST00000526734 DMAC1Q96GE9 116 aa9.02□□□□□ -0.97
VPS28-206ENST00000526734 K7ERU9 68 aa8.96□□□□□ -0.98
VPS28-206ENST00000526734 C20orf197Q8N268 126 aa8.95□□□□□ -0.98
VPS28-206ENST00000526734 SMIM20Q8N5G0 67 aa8.95□□□□□ -0.98
VPS28-206ENST00000526734 MT-ATP8P03928 68 aa8.89□□□□□ -0.99
VPS28-206ENST00000526734 TRAV7A0A075B6U4 112 aa8.88□□□□□ -0.99
VPS28-206ENST00000526734 R4GN34 69 aa8.85□□□□□ -0.99
VPS28-206ENST00000526734 ACYP2P14621 99 aa8.82□□□□□ -1
VPS28-206ENST00000526734 P0C880 135 aa8.8□□□□□ -1
VPS28-206ENST00000526734 PRO2289Q9P1D8 64 aa8.79□□□□□ -1
VPS28-206ENST00000526734 PLAC4Q8WY50 150 aa8.78□□□□□ -1
VPS28-206ENST00000526734 SPTSSBQ8NFR3 76 aa8.77□□□□□ -1.01
VPS28-206ENST00000526734 M0QZ58 72 aa8.75□□□□□ -1.01
VPS28-206ENST00000526734 KRTAP3-2Q9BYR7 98 aa8.73□□□□□ -1.01
VPS28-206ENST00000526734 NEBP20929 6669 aa8.68□□□□□ -1.02
VPS28-206ENST00000526734 KRTAP5-9P26371 169 aa8.67□□□□□ -1.02
VPS28-206ENST00000526734 CHKB-CPT1BH3BT56 60 aa8.65□□□□□ -1.02
VPS28-206ENST00000526734 MT1XP80297 61 aa8.65□□□□□ -1.02
VPS28-206ENST00000526734 SPANXA2-OT1Q8N9U9 137 aa8.62□□□□□ -1.03
VPS28-206ENST00000526734 SNURFQ9Y675 71 aa8.62□□□□□ -1.03
VPS28-206ENST00000526734 MUC12Q9UKN1 5478 aa8.6□□□□□ -1.03
VPS28-206ENST00000526734 SERP2Q8N6R1 65 aa8.59□□□□□ -1.03
VPS28-206ENST00000526734 LINC01554Q52M75 96 aa8.58□□□□□ -1.04
VPS28-206ENST00000526734 KRTAP12-2P59991 146 aa8.52□□□□□ -1.05
VPS28-206ENST00000526734 KMT2DO14686 5537 aa8.51□□□□□ -1.05
VPS28-206ENST00000526734 MDN1Q9NU22 5596 aa8.42□□□□□ -1.06
VPS28-206ENST00000526734 KRTAP8-1Q8IUC2 63 aa8.39□□□□□ -1.07
VPS28-206ENST00000526734 SPRR2FQ96RM1 72 aa8.38□□□□□ -1.07
VPS28-206ENST00000526734 KRTAP20-1Q3LI63 56 aa8.36□□□□□ -1.07
VPS28-206ENST00000526734 COX7CP15954 63 aa8.32□□□□□ -1.08
VPS28-206ENST00000526734 COA5Q86WW8 74 aa8.32□□□□□ -1.08
VPS28-206ENST00000526734 SPRR2EP22531 72 aa8.26□□□□□ -1.09
VPS28-206ENST00000526734 SPRR2BP35325 72 aa8.26□□□□□ -1.09
VPS28-206ENST00000526734 SPRR2AP35326 72 aa8.26□□□□□ -1.09
VPS28-206ENST00000526734 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
VPS28-206ENST00000526734 SEC61GP60059 68 aa8.23□□□□□ -1.09
VPS28-206ENST00000526734 KRTAP10-7P60409 375 aaPredicted RBP8.23□□□□□ -1.09
VPS28-206ENST00000526734 KRTAP13-4Q3LI77 160 aa8.21□□□□□ -1.1
VPS28-206ENST00000526734 KRTAP4-8A0A0G2JLE6 195 aa8.2□□□□□ -1.1
VPS28-206ENST00000526734 KRTAP4-8Q9BYQ9 185 aa8.2□□□□□ -1.1
VPS28-206ENST00000526734 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
VPS28-206ENST00000526734 H7BZZ5 65 aa8.17□□□□□ -1.1
VPS28-206ENST00000526734 KRTAP2-3P0C7H8 128 aa8.17□□□□□ -1.1
VPS28-206ENST00000526734 KRTAP2-4Q9BYR9 128 aa8.17□□□□□ -1.1
VPS28-206ENST00000526734 LCE1AQ5T7P2 110 aa8.15□□□□□ -1.1
VPS28-206ENST00000526734 CAMK2N1Q7Z7J9 78 aa8.14□□□□□ -1.11
VPS28-206ENST00000526734 CYSTM1Q9H1C7 97 aa8.08□□□□□ -1.12
VPS28-206ENST00000526734 A0A1B0GU33 70 aa8.03□□□□□ -1.12
VPS28-206ENST00000526734 ANAPC13Q9BS18 74 aa8.03□□□□□ -1.12
VPS28-206ENST00000526734 A0A0D9SG42 100 aa7.99□□□□□ -1.13
VPS28-206ENST00000526734 SPRR2DP22532 72 aa7.99□□□□□ -1.13
VPS28-206ENST00000526734 SPATA8Q6RVD6 105 aa7.97□□□□□ -1.13
VPS28-206ENST00000526734 A0A1B0GU69 56 aa7.92□□□□□ -1.14
VPS28-206ENST00000526734 KRTAP2-2Q9BYT5 123 aa7.91□□□□□ -1.14
VPS28-206ENST00000526734 KRTAP2-1Q9BYU5 128 aa7.91□□□□□ -1.14
VPS28-206ENST00000526734 SPINT4Q6UDR6 99 aa7.9□□□□□ -1.14
VPS28-206ENST00000526734 SMIM26A0A096LP01 95 aa7.86□□□□□ -1.15
VPS28-206ENST00000526734 ATP5EP56381 51 aaPredicted RBP7.86□□□□□ -1.15
VPS28-206ENST00000526734 KRTAP12-1P59990 96 aa7.85□□□□□ -1.15
VPS28-206ENST00000526734 CCDC179H3BU77 68 aa7.8□□□□□ -1.16
VPS28-206ENST00000526734 LCE3BQ5TA77 95 aa7.76□□□□□ -1.17
VPS28-206ENST00000526734 PRR15LQ9BU68 103 aa7.75□□□□□ -1.17
VPS28-206ENST00000526734 KRTAP19-7Q3SYF9 63 aa7.73□□□□□ -1.17
VPS28-206ENST00000526734 MT1EP04732 61 aa7.68□□□□□ -1.18
VPS28-206ENST00000526734 A8MU10 97 aa7.67□□□□□ -1.18
VPS28-206ENST00000526734 LCE5AQ5TCM9 118 aa7.63□□□□□ -1.19
VPS28-206ENST00000526734 KRTAP19-3Q7Z4W3 81 aa7.63□□□□□ -1.19
VPS28-206ENST00000526734 LINC01558Q9Y6Z2 57 aa7.63□□□□□ -1.19
VPS28-206ENST00000526734 TMEM258P61165 79 aa7.62□□□□□ -1.19
VPS28-206ENST00000526734 TNP1P09430 55 aa7.54□□□□□ -1.2
VPS28-206ENST00000526734 KRTAP19-5Q3LI72 72 aa7.54□□□□□ -1.2
VPS28-206ENST00000526734 MT1GP13640 62 aa7.48□□□□□ -1.21
VPS28-206ENST00000526734 C10orf95Q9H7T3 257 aa7.48□□□□□ -1.21
VPS28-206ENST00000526734 UQCR11O14957 56 aa7.46□□□□□ -1.22
VPS28-206ENST00000526734 PP632Q6XCG6 107 aa7.46□□□□□ -1.22
VPS28-206ENST00000526734 DSTQ03001 7570 aaKnown RBP7.4□□□□□ -1.22
VPS28-206ENST00000526734 LCE3AQ5TA76 89 aa7.4□□□□□ -1.22
VPS28-206ENST00000526734 MT1LQ93083 61 aa7.35□□□□□ -1.23
VPS28-206ENST00000526734 MT1MQ8N339 61 aa7.31□□□□□ -1.24
VPS28-206ENST00000526734 MIR22HGQ0VDD5 57 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms