RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 TNXBP22105 4242 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 OTOGQ6ZRI0 2925 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 CHD6Q8TD26 2715 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 DNAH6Q9C0G6 4158 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 CUBNO60494 3623 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 SRRM2Q9UQ35 2752 aaKnown RBP0.37□□□□□ -2.35
CPNE3-207ENST00000523588 DNAH2Q9P225 4427 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 AKAP13Q12802 2813 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 DNAH8Q96JB1 4490 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 MAST4O15021 2626 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 C9orf92A6NGG3 77 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 ATRQ13535 2644 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 SYNE1Q8NF91 8797 aaKnown RBP0.36□□□□□ -2.35
CPNE3-207ENST00000523588 USH2AO75445 5202 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 RELNP78509 3460 aa0.36□□□□□ -2.35
CPNE3-207ENST00000523588 HUWE1Q7Z6Z7 4374 aaKnown RBP0.36□□□□□ -2.35
CPNE3-207ENST00000523588 NBEAL2Q6ZNJ1 2754 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 PKHD1P08F94 4074 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 LRRK2Q5S007 2527 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 H3BNG1 76 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 PRM1P04553 51 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 LINC01556Q5JQF7 62 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 RANBP2P49792 3224 aaKnown RBP0.35□□□□□ -2.35
CPNE3-207ENST00000523588 DNAH10Q8IVF4 4471 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 ACANP16112 2415 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 HSPG2P98160 4391 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 USP9XQ93008 2570 aaPredicted RBP0.35□□□□□ -2.35
CPNE3-207ENST00000523588 PLECQ15149 4684 aaKnown RBP0.35□□□□□ -2.35
CPNE3-207ENST00000523588 DOPEY1Q5JWR5 2465 aa0.35□□□□□ -2.35
CPNE3-207ENST00000523588 FLGP20930 4061 aaPredicted RBP0.34□□□□□ -2.35
CPNE3-207ENST00000523588 MTORP42345 2549 aa0.34□□□□□ -2.35
CPNE3-207ENST00000523588 EPG5Q9HCE0 2579 aa0.34□□□□□ -2.35
CPNE3-207ENST00000523588 KRTAP8-1Q8IUC2 63 aa0.34□□□□□ -2.36
CPNE3-207ENST00000523588 C5orf42Q9H799 3197 aa0.34□□□□□ -2.36
CPNE3-207ENST00000523588 DMDP11532 3685 aa0.34□□□□□ -2.36
CPNE3-207ENST00000523588 DNAH1Q9P2D7 4330 aa0.34□□□□□ -2.36
CPNE3-207ENST00000523588 FAT3Q8TDW7 4589 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 LAMA5O15230 3695 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 CSMD1Q96PZ7 3565 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 DNAH5Q8TE73 4624 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 CD52P31358 61 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 DEFB133Q30KQ1 61 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 Q9Y3F1 56 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 PKD1P98161 4303 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 LRP1Q07954 4544 aaKnown RBP0.33□□□□□ -2.36
CPNE3-207ENST00000523588 HTTP42858 3142 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 ITPR1Q14643 2758 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 CRYBG3Q68DQ2 2970 aa0.33□□□□□ -2.36
CPNE3-207ENST00000523588 ACACBO00763 2458 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 SVEP1Q4LDE5 3571 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 DCHS2Q6V1P9 2916 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 MYO18BQ8IUG5 2567 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 BIRC6Q9NR09 4857 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 SMR3BP02814 79 aaPredicted RBP0.32□□□□□ -2.36
CPNE3-207ENST00000523588 U3KQA8 63 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 WDR87Q6ZQQ6 2873 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 SPEGQ15772 3267 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 DNAH9Q9NYC9 4486 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 FASNP49327 2511 aaKnown RBP0.32□□□□□ -2.36
CPNE3-207ENST00000523588 FAT1Q14517 4588 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 ZANQ9Y493 2812 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 SMG1Q96Q15 3661 aaKnown RBP0.32□□□□□ -2.36
CPNE3-207ENST00000523588 PRUNE2Q8WUY3 3088 aa0.32□□□□□ -2.36
CPNE3-207ENST00000523588 ANKRD11Q6UB99 2663 aaPredicted RBP0.31□□□□□ -2.36
CPNE3-207ENST00000523588 CEP350Q5VT06 3117 aa0.31□□□□□ -2.36
CPNE3-207ENST00000523588 WDFY4Q6ZS81 3184 aa0.31□□□□□ -2.36
CPNE3-207ENST00000523588 ZFYVE26Q68DK2 2539 aa0.31□□□□□ -2.36
CPNE3-207ENST00000523588 HTN3P15516 51 aa0.31□□□□□ -2.36
CPNE3-207ENST00000523588 RPS29P62273 56 aaKnown RBP0.31□□□□□ -2.36
CPNE3-207ENST00000523588 APOBP04114 4563 aaKnown RBP0.31□□□□□ -2.36
CPNE3-207ENST00000523588 MKI67P46013 3256 aaKnown RBP0.31□□□□□ -2.36
CPNE3-207ENST00000523588 CHD9Q3L8U1 2897 aa0.31□□□□□ -2.36
CPNE3-207ENST00000523588 VPS13CQ709C8 3753 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 SPTAN1Q13813 2472 aaKnown RBP0.3□□□□□ -2.36
CPNE3-207ENST00000523588 FRYLO94915 3013 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 FRYQ5TBA9 3013 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 DMXL1Q9Y485 3027 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 TLN2Q9Y4G6 2542 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 CELSR3Q9NYQ7 3312 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 CFAP54Q96N23 3096 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 CFAP47Q6ZTR5 3102 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 COL7A1Q02388 2944 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 KRTAP19-5Q3LI72 72 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 DNAH17Q9UFH2 4485 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 ATMQ13315 3056 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 NF1P21359 2839 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 FREM2Q5SZK8 3169 aa0.3□□□□□ -2.36
CPNE3-207ENST00000523588 USP9YO00507 2555 aaPredicted RBP0.3□□□□□ -2.36
CPNE3-207ENST00000523588 GOLGB1Q14789 3259 aaKnown RBP0.3□□□□□ -2.36
CPNE3-207ENST00000523588 GCN1Q92616 2671 aaKnown RBP0.3□□□□□ -2.36
CPNE3-207ENST00000523588 XIRP2A4UGR9 3374 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 TRIOO75962 3097 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 LPAP08519 4548 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 DMXL2Q8TDJ6 3036 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 DEFB4AO15263 64 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 FLNCQ14315 2725 aa0.29□□□□□ -2.36
CPNE3-207ENST00000523588 DCHS1Q96JQ0 3298 aa0.28□□□□□ -2.36
CPNE3-207ENST00000523588 MT1AP04731 61 aa0.28□□□□□ -2.36
CPNE3-207ENST00000523588 KRTAP6-2Q3LI66 62 aa0.28□□□□□ -2.36
CPNE3-207ENST00000523588 CSMD2Q7Z408 3487 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms