RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 H0Y9P7 68 aa13.33□□□□□ -0.28
SYNPO-203ENST00000518872 MT1BP07438 61 aa13.33□□□□□ -0.28
SYNPO-203ENST00000518872 A0A087WVE0 104 aa13.31□□□□□ -0.28
SYNPO-203ENST00000518872 Q5VV11 94 aa13.3□□□□□ -0.28
SYNPO-203ENST00000518872 CRIPTQ9P021 101 aa13.2□□□□□ -0.3
SYNPO-203ENST00000518872 KRTAP6-3Q3LI67 103 aa13.19□□□□□ -0.3
SYNPO-203ENST00000518872 A8MUN3 132 aa13.17□□□□□ -0.3
SYNPO-203ENST00000518872 IMUPQ9GZP8 106 aa13.17□□□□□ -0.3
SYNPO-203ENST00000518872 A6NN06 94 aa13.16□□□□□ -0.3
SYNPO-203ENST00000518872 A0A1B0GV90 55 aa13.14□□□□□ -0.31
SYNPO-203ENST00000518872 NDUFC1O43677 76 aa13.14□□□□□ -0.31
SYNPO-203ENST00000518872 H0YAA0 97 aa13.13□□□□□ -0.31
SYNPO-203ENST00000518872 OCR1Q9BZK8 76 aa13.13□□□□□ -0.31
SYNPO-203ENST00000518872 LINC00208Q96KT6 92 aa13.11□□□□□ -0.31
SYNPO-203ENST00000518872 MP68P56378 58 aa13.05□□□□□ -0.32
SYNPO-203ENST00000518872 KRTAP10-5P60370 271 aa13.05□□□□□ -0.32
SYNPO-203ENST00000518872 J3QR89 54 aa12.97□□□□□ -0.33
SYNPO-203ENST00000518872 H3BPC8 53 aa12.93□□□□□ -0.34
SYNPO-203ENST00000518872 ADM2Q7Z4H4 148 aa12.86□□□□□ -0.35
SYNPO-203ENST00000518872 DMAC1Q96GE9 116 aa12.77□□□□□ -0.37
SYNPO-203ENST00000518872 SCGB1A1P11684 91 aa12.75□□□□□ -0.37
SYNPO-203ENST00000518872 C20orf197Q8N268 126 aa12.63□□□□□ -0.39
SYNPO-203ENST00000518872 KRTAP5-9P26371 169 aa12.61□□□□□ -0.39
SYNPO-203ENST00000518872 P0C880 135 aa12.58□□□□□ -0.4
SYNPO-203ENST00000518872 R4GN34 69 aa12.57□□□□□ -0.4
SYNPO-203ENST00000518872 NEBP20929 6669 aa12.56□□□□□ -0.4
SYNPO-203ENST00000518872 MUC12Q9UKN1 5478 aa12.55□□□□□ -0.4
SYNPO-203ENST00000518872 PRO2289Q9P1D8 64 aa12.54□□□□□ -0.4
SYNPO-203ENST00000518872 TRAV7A0A075B6U4 112 aa12.51□□□□□ -0.41
SYNPO-203ENST00000518872 PLAC4Q8WY50 150 aa12.5□□□□□ -0.41
SYNPO-203ENST00000518872 KRTAP3-2Q9BYR7 98 aa12.5□□□□□ -0.41
SYNPO-203ENST00000518872 MT1XP80297 61 aa12.49□□□□□ -0.41
SYNPO-203ENST00000518872 SMIM20Q8N5G0 67 aa12.49□□□□□ -0.41
SYNPO-203ENST00000518872 MT-ATP8P03928 68 aa12.47□□□□□ -0.41
SYNPO-203ENST00000518872 K7ERU9 68 aa12.44□□□□□ -0.42
SYNPO-203ENST00000518872 M0QZ58 72 aa12.44□□□□□ -0.42
SYNPO-203ENST00000518872 ACYP2P14621 99 aa12.42□□□□□ -0.42
SYNPO-203ENST00000518872 KMT2DO14686 5537 aa12.37□□□□□ -0.43
SYNPO-203ENST00000518872 SPTSSBQ8NFR3 76 aa12.29□□□□□ -0.44
SYNPO-203ENST00000518872 KRTAP12-2P59991 146 aa12.26□□□□□ -0.45
SYNPO-203ENST00000518872 LINC01554Q52M75 96 aa12.21□□□□□ -0.45
SYNPO-203ENST00000518872 MDN1Q9NU22 5596 aa12.19□□□□□ -0.46
SYNPO-203ENST00000518872 KRTAP20-1Q3LI63 56 aa12.17□□□□□ -0.46
SYNPO-203ENST00000518872 SNURFQ9Y675 71 aa12.14□□□□□ -0.47
SYNPO-203ENST00000518872 CHKB-CPT1BH3BT56 60 aa12.13□□□□□ -0.47
SYNPO-203ENST00000518872 SPRR2FQ96RM1 72 aa12.13□□□□□ -0.47
SYNPO-203ENST00000518872 SPANXA2-OT1Q8N9U9 137 aa12.11□□□□□ -0.47
SYNPO-203ENST00000518872 KRTAP8-1Q8IUC2 63 aa12.09□□□□□ -0.47
SYNPO-203ENST00000518872 SERP2Q8N6R1 65 aa12.01□□□□□ -0.49
SYNPO-203ENST00000518872 SPRR2EP22531 72 aa11.95□□□□□ -0.5
SYNPO-203ENST00000518872 SPRR2BP35325 72 aa11.95□□□□□ -0.5
SYNPO-203ENST00000518872 SPRR2AP35326 72 aa11.95□□□□□ -0.5
SYNPO-203ENST00000518872 KRTAP4-8A0A0G2JLE6 195 aa11.91□□□□□ -0.5
SYNPO-203ENST00000518872 KRTAP4-8Q9BYQ9 185 aa11.91□□□□□ -0.5
SYNPO-203ENST00000518872 KRTAP10-12P60413 245 aa11.89□□□□□ -0.51
SYNPO-203ENST00000518872 KRTAP2-3P0C7H8 128 aa11.88□□□□□ -0.51
SYNPO-203ENST00000518872 KRTAP10-7P60409 375 aaPredicted RBP11.88□□□□□ -0.51
SYNPO-203ENST00000518872 KRTAP2-4Q9BYR9 128 aa11.88□□□□□ -0.51
SYNPO-203ENST00000518872 LCE1AQ5T7P2 110 aa11.85□□□□□ -0.51
SYNPO-203ENST00000518872 KRTAP13-4Q3LI77 160 aa11.74□□□□□ -0.53
SYNPO-203ENST00000518872 COA5Q86WW8 74 aa11.7□□□□□ -0.54
SYNPO-203ENST00000518872 COX7CP15954 63 aa11.61□□□□□ -0.55
SYNPO-203ENST00000518872 SPRR2DP22532 72 aa11.56□□□□□ -0.56
SYNPO-203ENST00000518872 CAMK2N1Q7Z7J9 78 aa11.52□□□□□ -0.57
SYNPO-203ENST00000518872 SEC61GP60059 68 aa11.51□□□□□ -0.57
SYNPO-203ENST00000518872 KRTAP2-2Q9BYT5 123 aa11.51□□□□□ -0.57
SYNPO-203ENST00000518872 KRTAP2-1Q9BYU5 128 aa11.51□□□□□ -0.57
SYNPO-203ENST00000518872 SERP1Q9Y6X1 66 aa11.49□□□□□ -0.57
SYNPO-203ENST00000518872 H7BZZ5 65 aa11.47□□□□□ -0.57
SYNPO-203ENST00000518872 CYSTM1Q9H1C7 97 aa11.4□□□□□ -0.58
SYNPO-203ENST00000518872 A0A1B0GU33 70 aa11.32□□□□□ -0.6
SYNPO-203ENST00000518872 A0A0D9SG42 100 aa11.31□□□□□ -0.6
SYNPO-203ENST00000518872 SPATA8Q6RVD6 105 aa11.31□□□□□ -0.6
SYNPO-203ENST00000518872 LCE3BQ5TA77 95 aa11.26□□□□□ -0.61
SYNPO-203ENST00000518872 KRTAP19-7Q3SYF9 63 aa11.18□□□□□ -0.62
SYNPO-203ENST00000518872 KRTAP12-1P59990 96 aa11.17□□□□□ -0.62
SYNPO-203ENST00000518872 SPINT4Q6UDR6 99 aa11.17□□□□□ -0.62
SYNPO-203ENST00000518872 ANAPC13Q9BS18 74 aa11.11□□□□□ -0.63
SYNPO-203ENST00000518872 A0A1B0GU69 56 aa11.09□□□□□ -0.63
SYNPO-203ENST00000518872 MT1EP04732 61 aa11.08□□□□□ -0.64
SYNPO-203ENST00000518872 LCE5AQ5TCM9 118 aa11.05□□□□□ -0.64
SYNPO-203ENST00000518872 SMIM26A0A096LP01 95 aa11.03□□□□□ -0.64
SYNPO-203ENST00000518872 KRTAP19-3Q7Z4W3 81 aa11□□□□□ -0.65
SYNPO-203ENST00000518872 CCDC179H3BU77 68 aa10.9□□□□□ -0.66
SYNPO-203ENST00000518872 ATP5EP56381 51 aaPredicted RBP10.88□□□□□ -0.67
SYNPO-203ENST00000518872 A8MU10 97 aa10.87□□□□□ -0.67
SYNPO-203ENST00000518872 KRTAP19-5Q3LI72 72 aa10.84□□□□□ -0.67
SYNPO-203ENST00000518872 DSTQ03001 7570 aaKnown RBP10.8□□□□□ -0.68
SYNPO-203ENST00000518872 PRR15LQ9BU68 103 aa10.77□□□□□ -0.69
SYNPO-203ENST00000518872 MT1GP13640 62 aa10.75□□□□□ -0.69
SYNPO-203ENST00000518872 C10orf95Q9H7T3 257 aa10.68□□□□□ -0.7
SYNPO-203ENST00000518872 LINC01558Q9Y6Z2 57 aa10.68□□□□□ -0.7
SYNPO-203ENST00000518872 TNP1P09430 55 aa10.66□□□□□ -0.7
SYNPO-203ENST00000518872 PP632Q6XCG6 107 aa10.65□□□□□ -0.7
SYNPO-203ENST00000518872 LCE3AQ5TA76 89 aa10.58□□□□□ -0.72
SYNPO-203ENST00000518872 MT1LQ93083 61 aa10.58□□□□□ -0.72
SYNPO-203ENST00000518872 TMEM258P61165 79 aa10.54□□□□□ -0.72
SYNPO-203ENST00000518872 MT1MQ8N339 61 aa10.54□□□□□ -0.72
SYNPO-203ENST00000518872 GPR98Q8WXG9 6306 aa10.54□□□□□ -0.72
SYNPO-203ENST00000518872 UQCR11O14957 56 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms