RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 KRTAP13-4Q3LI77 160 aa6.16□□□□□ -1.42
USP53-209ENST00000514665 KRTAP10-6P60371 365 aaPredicted RBP6.14□□□□□ -1.43
USP53-209ENST00000514665 KMT2AQ03164 3969 aa6.13□□□□□ -1.43
USP53-209ENST00000514665 DYNC2H1Q8NCM8 4307 aaKnown RBP6.06□□□□□ -1.44
USP53-209ENST00000514665 HYDINQ4G0P3 5121 aa6.06□□□□□ -1.44
USP53-209ENST00000514665 FRAS1Q86XX4 4008 aa6.06□□□□□ -1.44
USP53-209ENST00000514665 DNAH2Q9P225 4427 aa6.04□□□□□ -1.44
USP53-209ENST00000514665 VPS13DQ5THJ4 4388 aa6.03□□□□□ -1.44
USP53-209ENST00000514665 MT1HL1P0DM35 61 aa5.98□□□□□ -1.45
USP53-209ENST00000514665 KRTAP3-3Q9BYR6 98 aa5.95□□□□□ -1.46
USP53-209ENST00000514665 KMT2CQ8NEZ4 4911 aaKnown RBP5.95□□□□□ -1.46
USP53-209ENST00000514665 KRTAP3-2Q9BYR7 98 aa5.94□□□□□ -1.46
USP53-209ENST00000514665 KRTAP10-4P60372 401 aaPredicted RBP5.94□□□□□ -1.46
USP53-209ENST00000514665 PRO2289Q9P1D8 64 aa5.94□□□□□ -1.46
USP53-209ENST00000514665 DNAH6Q9C0G6 4158 aa5.92□□□□□ -1.46
USP53-209ENST00000514665 HECTD4Q9Y4D8 3996 aa5.9□□□□□ -1.47
USP53-209ENST00000514665 SACSQ9NZJ4 4579 aa5.86□□□□□ -1.47
USP53-209ENST00000514665 PKHD1P08F94 4074 aa5.85□□□□□ -1.47
USP53-209ENST00000514665 FAT2Q9NYQ8 4349 aa5.83□□□□□ -1.48
USP53-209ENST00000514665 KRTAP4-5Q9BYR2 181 aa5.82□□□□□ -1.48
USP53-209ENST00000514665 RYR3Q15413 4870 aa5.81□□□□□ -1.48
USP53-209ENST00000514665 PKD1P98161 4303 aa5.8□□□□□ -1.48
USP53-209ENST00000514665 DNAH11Q96DT5 4516 aa5.8□□□□□ -1.48
USP53-209ENST00000514665 DNAH5Q8TE73 4624 aa5.79□□□□□ -1.48
USP53-209ENST00000514665 ALMS1Q8TCU4 4167 aa5.77□□□□□ -1.49
USP53-209ENST00000514665 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
USP53-209ENST00000514665 DNAH17Q9UFH2 4485 aa5.76□□□□□ -1.49
USP53-209ENST00000514665 DNAH8Q96JB1 4490 aa5.75□□□□□ -1.49
USP53-209ENST00000514665 RYR2Q92736 4967 aa5.72□□□□□ -1.49
USP53-209ENST00000514665 LRP1BQ9NZR2 4599 aa5.65□□□□□ -1.5
USP53-209ENST00000514665 LORP23490 312 aaPredicted RBP5.64□□□□□ -1.51
USP53-209ENST00000514665 FAT1Q14517 4588 aa5.63□□□□□ -1.51
USP53-209ENST00000514665 EPPK1P58107 5090 aaKnown RBP5.6□□□□□ -1.51
USP53-209ENST00000514665 VPS13BQ7Z7G8 4022 aa5.57□□□□□ -1.52
USP53-209ENST00000514665 DYNC1H1Q14204 4646 aaKnown RBP5.56□□□□□ -1.52
USP53-209ENST00000514665 MYCBP2O75592 4640 aa5.55□□□□□ -1.52
USP53-209ENST00000514665 APOBP04114 4563 aaKnown RBP5.5□□□□□ -1.53
USP53-209ENST00000514665 RYR1P21817 5038 aa5.5□□□□□ -1.53
USP53-209ENST00000514665 KRTAP10-12P60413 245 aa5.46□□□□□ -1.54
USP53-209ENST00000514665 KIAA1109Q2LD37 5005 aa5.45□□□□□ -1.54
USP53-209ENST00000514665 FAT3Q8TDW7 4589 aa5.44□□□□□ -1.54
USP53-209ENST00000514665 KRTAP4-1Q9BYQ7 146 aa5.41□□□□□ -1.54
USP53-209ENST00000514665 HSPG2P98160 4391 aa5.41□□□□□ -1.54
USP53-209ENST00000514665 LRP1Q07954 4544 aaKnown RBP5.39□□□□□ -1.55
USP53-209ENST00000514665 LCE3AQ5TA76 89 aa5.38□□□□□ -1.55
USP53-209ENST00000514665 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
USP53-209ENST00000514665 KRTAP17-1Q9BYP8 105 aa5.36□□□□□ -1.55
USP53-209ENST00000514665 PKHD1L1Q86WI1 4243 aa5.34□□□□□ -1.55
USP53-209ENST00000514665 CRCT1Q9UGL9 99 aa5.27□□□□□ -1.57
USP53-209ENST00000514665 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
USP53-209ENST00000514665 ABCA13Q86UQ4 5058 aa5.24□□□□□ -1.57
USP53-209ENST00000514665 TNXBP22105 4242 aa5.2□□□□□ -1.58
USP53-209ENST00000514665 INE1O15225 51 aa5.2□□□□□ -1.58
USP53-209ENST00000514665 PCLOQ9Y6V0 5065 aa5.18□□□□□ -1.58
USP53-209ENST00000514665 MT1HP80294 61 aa5.12□□□□□ -1.59
USP53-209ENST00000514665 MT2AP02795 61 aa5.11□□□□□ -1.59
USP53-209ENST00000514665 HERC2O95714 4834 aa5.1□□□□□ -1.59
USP53-209ENST00000514665 HERC1Q15751 4861 aa5.08□□□□□ -1.6
USP53-209ENST00000514665 BIRC6Q9NR09 4857 aa5.08□□□□□ -1.6
USP53-209ENST00000514665 LPAP08519 4548 aa5.08□□□□□ -1.6
USP53-209ENST00000514665 SPRR2GQ9BYE4 73 aa5.07□□□□□ -1.6
USP53-209ENST00000514665 LRP2P98164 4655 aa5.05□□□□□ -1.6
USP53-209ENST00000514665 MT1FP04733 61 aa5.04□□□□□ -1.6
USP53-209ENST00000514665 MUC2Q02817 5179 aa4.97□□□□□ -1.61
USP53-209ENST00000514665 KRTAP8-1Q8IUC2 63 aa4.94□□□□□ -1.62
USP53-209ENST00000514665 KRTAP10-5P60370 271 aa4.9□□□□□ -1.63
USP53-209ENST00000514665 KRTAP19-1Q8IUB9 90 aa4.89□□□□□ -1.63
USP53-209ENST00000514665 KRTAP19-5Q3LI72 72 aa4.84□□□□□ -1.64
USP53-209ENST00000514665 RNF213Q63HN8 5207 aa4.82□□□□□ -1.64
USP53-209ENST00000514665 UBR4Q5T4S7 5183 aa4.8□□□□□ -1.64
USP53-209ENST00000514665 FSIP2Q5CZC0 6907 aa4.8□□□□□ -1.64
USP53-209ENST00000514665 HMCN2Q8NDA2 5059 aa4.79□□□□□ -1.64
USP53-209ENST00000514665 KRTAP10-7P60409 375 aaPredicted RBP4.75□□□□□ -1.65
USP53-209ENST00000514665 KRTAP19-8Q3LI54 63 aa4.72□□□□□ -1.65
USP53-209ENST00000514665 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
USP53-209ENST00000514665 FAT4Q6V0I7 4981 aa4.71□□□□□ -1.66
USP53-209ENST00000514665 MT1XP80297 61 aa4.67□□□□□ -1.66
USP53-209ENST00000514665 MUC17Q685J3 4493 aa4.66□□□□□ -1.66
USP53-209ENST00000514665 MT1BP07438 61 aa4.65□□□□□ -1.66
USP53-209ENST00000514665 LCE2CQ5TA81 110 aa4.64□□□□□ -1.67
USP53-209ENST00000514665 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
USP53-209ENST00000514665 OBSCNQ5VST9 7968 aa4.64□□□□□ -1.67
USP53-209ENST00000514665 SPRR2FQ96RM1 72 aa4.63□□□□□ -1.67
USP53-209ENST00000514665 SPRR5A0A1B0GTR4 108 aa4.61□□□□□ -1.67
USP53-209ENST00000514665 SYNE1Q8NF91 8797 aaKnown RBP4.6□□□□□ -1.67
USP53-209ENST00000514665 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
USP53-209ENST00000514665 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
USP53-209ENST00000514665 KRTAP19-2Q3LHN2 52 aa4.5□□□□□ -1.69
USP53-209ENST00000514665 KRTAP9-3Q9BYQ3 159 aa4.49□□□□□ -1.69
USP53-209ENST00000514665 FLGP20930 4061 aaPredicted RBP4.43□□□□□ -1.7
USP53-209ENST00000514665 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
USP53-209ENST00000514665 MT1GP13640 62 aa4.39□□□□□ -1.71
USP53-209ENST00000514665 LCE3BQ5TA77 95 aa4.35□□□□□ -1.71
USP53-209ENST00000514665 USH2AO75445 5202 aa4.35□□□□□ -1.71
USP53-209ENST00000514665 LCE2BO14633 110 aa4.35□□□□□ -1.71
USP53-209ENST00000514665 KRTAP4-7Q9BYR0 210 aa4.34□□□□□ -1.71
USP53-209ENST00000514665 KRTAP12-4P60329 112 aa4.3□□□□□ -1.72
USP53-209ENST00000514665 DSTQ03001 7570 aaKnown RBP4.24□□□□□ -1.73
USP53-209ENST00000514665 SPRR2EP22531 72 aa4.22□□□□□ -1.73
USP53-209ENST00000514665 SPRR2BP35325 72 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms