RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 C20orf166-AS1Q96NR2 134 aa5.13□□□□□ -1.59
VCAN-210ENST00000513960 KRTAP3-1Q9BYR8 98 aa5.13□□□□□ -1.59
VCAN-210ENST00000513960 KRTAP10-4P60372 401 aaPredicted RBP5.12□□□□□ -1.59
VCAN-210ENST00000513960 FAT1Q14517 4588 aa5.12□□□□□ -1.59
VCAN-210ENST00000513960 P0C880 135 aa5.12□□□□□ -1.59
VCAN-210ENST00000513960 APOBP04114 4563 aaKnown RBP5.06□□□□□ -1.6
VCAN-210ENST00000513960 TPRXLQ17RH7 258 aa5.04□□□□□ -1.6
VCAN-210ENST00000513960 Q5VSD8 79 aa5.02□□□□□ -1.61
VCAN-210ENST00000513960 S4R3F8 94 aa5.01□□□□□ -1.61
VCAN-210ENST00000513960 KRTAP13-4Q3LI77 160 aa5□□□□□ -1.61
VCAN-210ENST00000513960 RYR2Q92736 4967 aa5□□□□□ -1.61
VCAN-210ENST00000513960 PKHD1L1Q86WI1 4243 aa5□□□□□ -1.61
VCAN-210ENST00000513960 KRTAP10-8P60410 259 aa4.98□□□□□ -1.61
VCAN-210ENST00000513960 KMT2CQ8NEZ4 4911 aaKnown RBP4.95□□□□□ -1.62
VCAN-210ENST00000513960 KRTAP10-6P60371 365 aaPredicted RBP4.93□□□□□ -1.62
VCAN-210ENST00000513960 LRP1Q07954 4544 aaKnown RBP4.91□□□□□ -1.62
VCAN-210ENST00000513960 KRTAP12-2P59991 146 aa4.91□□□□□ -1.62
VCAN-210ENST00000513960 XP32Q5T750 250 aa4.9□□□□□ -1.63
VCAN-210ENST00000513960 FAT3Q8TDW7 4589 aa4.89□□□□□ -1.63
VCAN-210ENST00000513960 KRTAP3-3Q9BYR6 98 aa4.85□□□□□ -1.63
VCAN-210ENST00000513960 TNXBP22105 4242 aa4.85□□□□□ -1.63
VCAN-210ENST00000513960 HSPG2P98160 4391 aa4.85□□□□□ -1.63
VCAN-210ENST00000513960 KRTAP3-2Q9BYR7 98 aa4.85□□□□□ -1.63
VCAN-210ENST00000513960 KRTAP15-1Q3LI76 137 aa4.83□□□□□ -1.64
VCAN-210ENST00000513960 RYR1P21817 5038 aa4.82□□□□□ -1.64
VCAN-210ENST00000513960 MT1HL1P0DM35 61 aa4.81□□□□□ -1.64
VCAN-210ENST00000513960 MYCBP2O75592 4640 aa4.81□□□□□ -1.64
VCAN-210ENST00000513960 M0QZ58 72 aa4.8□□□□□ -1.64
VCAN-210ENST00000513960 SEC61BP60468 96 aaKnown RBP4.8□□□□□ -1.64
VCAN-210ENST00000513960 KRTAP12-1P59990 96 aa4.8□□□□□ -1.64
VCAN-210ENST00000513960 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
VCAN-210ENST00000513960 KRTAP17-1Q9BYP8 105 aa4.79□□□□□ -1.64
VCAN-210ENST00000513960 KIAA1109Q2LD37 5005 aa4.78□□□□□ -1.64
VCAN-210ENST00000513960 RYR3Q15413 4870 aa4.78□□□□□ -1.65
VCAN-210ENST00000513960 R4GN34 69 aa4.77□□□□□ -1.65
VCAN-210ENST00000513960 PLAC4Q8WY50 150 aa4.69□□□□□ -1.66
VCAN-210ENST00000513960 LRP2P98164 4655 aa4.64□□□□□ -1.67
VCAN-210ENST00000513960 KRTAP4-5Q9BYR2 181 aa4.62□□□□□ -1.67
VCAN-210ENST00000513960 EPPK1P58107 5090 aaKnown RBP4.62□□□□□ -1.67
VCAN-210ENST00000513960 J3QL48 77 aa4.61□□□□□ -1.67
VCAN-210ENST00000513960 LPAP08519 4548 aa4.59□□□□□ -1.67
VCAN-210ENST00000513960 ABCA13Q86UQ4 5058 aa4.53□□□□□ -1.68
VCAN-210ENST00000513960 LORP23490 312 aaPredicted RBP4.49□□□□□ -1.69
VCAN-210ENST00000513960 KRTAP4-1Q9BYQ7 146 aa4.45□□□□□ -1.7
VCAN-210ENST00000513960 HERC2O95714 4834 aa4.42□□□□□ -1.7
VCAN-210ENST00000513960 PP632Q6XCG6 107 aa4.4□□□□□ -1.7
VCAN-210ENST00000513960 MUC17Q685J3 4493 aa4.39□□□□□ -1.71
VCAN-210ENST00000513960 TNP1P09430 55 aa4.36□□□□□ -1.71
VCAN-210ENST00000513960 KRTAP19-2Q3LHN2 52 aa4.32□□□□□ -1.72
VCAN-210ENST00000513960 BIRC6Q9NR09 4857 aa4.28□□□□□ -1.72
VCAN-210ENST00000513960 MUC2Q02817 5179 aa4.24□□□□□ -1.73
VCAN-210ENST00000513960 FLGP20930 4061 aaPredicted RBP4.2□□□□□ -1.74
VCAN-210ENST00000513960 M0R2T5 61 aa4.2□□□□□ -1.74
VCAN-210ENST00000513960 HERC1Q15751 4861 aa4.17□□□□□ -1.74
VCAN-210ENST00000513960 HMCN2Q8NDA2 5059 aa4.14□□□□□ -1.75
VCAN-210ENST00000513960 PCLOQ9Y6V0 5065 aa4.12□□□□□ -1.75
VCAN-210ENST00000513960 LCE2CQ5TA81 110 aa4.1□□□□□ -1.75
VCAN-210ENST00000513960 PRO2289Q9P1D8 64 aa4.08□□□□□ -1.76
VCAN-210ENST00000513960 FAT4Q6V0I7 4981 aa4.06□□□□□ -1.76
VCAN-210ENST00000513960 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
VCAN-210ENST00000513960 LCE3AQ5TA76 89 aa4.04□□□□□ -1.76
VCAN-210ENST00000513960 KRTAP10-10P60014 251 aa4.03□□□□□ -1.76
VCAN-210ENST00000513960 MT1HP80294 61 aa4.03□□□□□ -1.76
VCAN-210ENST00000513960 KRTAP19-1Q8IUB9 90 aa4□□□□□ -1.77
VCAN-210ENST00000513960 KRTAP23-1A1A580 65 aa3.99□□□□□ -1.77
VCAN-210ENST00000513960 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
VCAN-210ENST00000513960 SPRR5A0A1B0GTR4 108 aa3.98□□□□□ -1.77
VCAN-210ENST00000513960 UBR4Q5T4S7 5183 aa3.96□□□□□ -1.77
VCAN-210ENST00000513960 MT2AP02795 61 aa3.96□□□□□ -1.78
VCAN-210ENST00000513960 MT1FP04733 61 aa3.95□□□□□ -1.78
VCAN-210ENST00000513960 INE1O15225 51 aa3.94□□□□□ -1.78
VCAN-210ENST00000513960 KRTAP9-8Q9BYQ0 159 aa3.91□□□□□ -1.78
VCAN-210ENST00000513960 LCE2DQ5TA82 110 aaPredicted RBP3.87□□□□□ -1.79
VCAN-210ENST00000513960 KRTAP19-8Q3LI54 63 aa3.86□□□□□ -1.79
VCAN-210ENST00000513960 KRTAP12-3P60328 96 aa3.83□□□□□ -1.8
VCAN-210ENST00000513960 MT1BP07438 61 aa3.8□□□□□ -1.8
VCAN-210ENST00000513960 KRTAP10-12P60413 245 aa3.8□□□□□ -1.8
VCAN-210ENST00000513960 KRTAP10-5P60370 271 aa3.77□□□□□ -1.81
VCAN-210ENST00000513960 MT1XP80297 61 aa3.77□□□□□ -1.81
VCAN-210ENST00000513960 KRTAP9-3Q9BYQ3 159 aa3.75□□□□□ -1.81
VCAN-210ENST00000513960 KRTAP8-1Q8IUC2 63 aa3.75□□□□□ -1.81
VCAN-210ENST00000513960 KRTAP10-7P60409 375 aaPredicted RBP3.67□□□□□ -1.82
VCAN-210ENST00000513960 LCE2BO14633 110 aa3.61□□□□□ -1.83
VCAN-210ENST00000513960 KRTAP19-5Q3LI72 72 aa3.58□□□□□ -1.84
VCAN-210ENST00000513960 LCE2AQ5TA79 106 aaPredicted RBP3.56□□□□□ -1.84
VCAN-210ENST00000513960 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
VCAN-210ENST00000513960 USH2AO75445 5202 aa3.52□□□□□ -1.85
VCAN-210ENST00000513960 CRCT1Q9UGL9 99 aa3.48□□□□□ -1.85
VCAN-210ENST00000513960 KMT2DO14686 5537 aa3.48□□□□□ -1.85
VCAN-210ENST00000513960 KRTAP4-8A0A0G2JLE6 195 aa3.46□□□□□ -1.86
VCAN-210ENST00000513960 KRTAP4-8Q9BYQ9 185 aa3.46□□□□□ -1.86
VCAN-210ENST00000513960 KRTAP4-7Q9BYR0 210 aa3.45□□□□□ -1.86
VCAN-210ENST00000513960 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.86
VCAN-210ENST00000513960 KRTAP9-6A8MVA2 160 aa3.39□□□□□ -1.87
VCAN-210ENST00000513960 KRTAP19-7Q3SYF9 63 aa3.35□□□□□ -1.87
VCAN-210ENST00000513960 KRTAP19-4Q3LI73 84 aa3.29□□□□□ -1.88
VCAN-210ENST00000513960 OBSCNQ5VST9 7968 aa3.29□□□□□ -1.88
VCAN-210ENST00000513960 MT1EP04732 61 aa3.27□□□□□ -1.89
VCAN-210ENST00000513960 FSIP2Q5CZC0 6907 aa3.27□□□□□ -1.89
VCAN-210ENST00000513960 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms