RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 EPPK1P58107 5090 aaKnown RBP1.75□□□□□ -2.13
VCAN-209ENST00000513016 KRTAP19-4Q3LI73 84 aa1.74□□□□□ -2.13
VCAN-209ENST00000513016 MT2AP02795 61 aa1.74□□□□□ -2.13
VCAN-209ENST00000513016 DNAH2Q9P225 4427 aa1.74□□□□□ -2.13
VCAN-209ENST00000513016 KRTAP10-7P60409 375 aaPredicted RBP1.73□□□□□ -2.13
VCAN-209ENST00000513016 FBN1P35555 2871 aaKnown RBP1.73□□□□□ -2.13
VCAN-209ENST00000513016 DNAH10Q8IVF4 4471 aa1.73□□□□□ -2.13
VCAN-209ENST00000513016 DNAH1Q9P2D7 4330 aa1.73□□□□□ -2.13
VCAN-209ENST00000513016 KIAA1109Q2LD37 5005 aa1.72□□□□□ -2.13
VCAN-209ENST00000513016 SPRR2FQ96RM1 72 aa1.72□□□□□ -2.13
VCAN-209ENST00000513016 BSNQ9UPA5 3926 aa1.72□□□□□ -2.13
VCAN-209ENST00000513016 SPRR2GQ9BYE4 73 aa1.72□□□□□ -2.13
VCAN-209ENST00000513016 SVEP1Q4LDE5 3571 aa1.71□□□□□ -2.13
VCAN-209ENST00000513016 DNAH11Q96DT5 4516 aa1.71□□□□□ -2.14
VCAN-209ENST00000513016 VWFP04275 2813 aa1.71□□□□□ -2.14
VCAN-209ENST00000513016 KRTAP4-1Q9BYQ7 146 aa1.71□□□□□ -2.14
VCAN-209ENST00000513016 KRTAP10-5P60370 271 aa1.7□□□□□ -2.14
VCAN-209ENST00000513016 VPS13CQ709C8 3753 aa1.68□□□□□ -2.14
VCAN-209ENST00000513016 PLECQ15149 4684 aaKnown RBP1.68□□□□□ -2.14
VCAN-209ENST00000513016 MT1FP04733 61 aa1.67□□□□□ -2.14
VCAN-209ENST00000513016 HERC1Q15751 4861 aa1.67□□□□□ -2.14
VCAN-209ENST00000513016 SPRR2EP22531 72 aa1.67□□□□□ -2.14
VCAN-209ENST00000513016 SPRR2BP35325 72 aa1.67□□□□□ -2.14
VCAN-209ENST00000513016 SPRR2AP35326 72 aa1.67□□□□□ -2.14
VCAN-209ENST00000513016 SRRM2Q9UQ35 2752 aaKnown RBP1.66□□□□□ -2.14
VCAN-209ENST00000513016 NBPF19A0A087WUL8 3843 aa1.66□□□□□ -2.14
VCAN-209ENST00000513016 ABCA13Q86UQ4 5058 aa1.66□□□□□ -2.14
VCAN-209ENST00000513016 DNAH9Q9NYC9 4486 aa1.65□□□□□ -2.15
VCAN-209ENST00000513016 MEGF8Q7Z7M0 2845 aa1.64□□□□□ -2.15
VCAN-209ENST00000513016 ZNF469Q96JG9 3925 aaPredicted RBP1.64□□□□□ -2.15
VCAN-209ENST00000513016 FAT4Q6V0I7 4981 aa1.64□□□□□ -2.15
VCAN-209ENST00000513016 DNAH5Q8TE73 4624 aa1.63□□□□□ -2.15
VCAN-209ENST00000513016 SPRR2DP22532 72 aa1.62□□□□□ -2.15
VCAN-209ENST00000513016 KRTAP19-8Q3LI54 63 aa1.62□□□□□ -2.15
VCAN-209ENST00000513016 KRTAP19-5Q3LI72 72 aa1.61□□□□□ -2.15
VCAN-209ENST00000513016 LCE2DQ5TA82 110 aaPredicted RBP1.61□□□□□ -2.15
VCAN-209ENST00000513016 DYNC1H1Q14204 4646 aaKnown RBP1.6□□□□□ -2.15
VCAN-209ENST00000513016 LCE2BO14633 110 aa1.6□□□□□ -2.15
VCAN-209ENST00000513016 DNAH17Q9UFH2 4485 aa1.6□□□□□ -2.15
VCAN-209ENST00000513016 HMCN2Q8NDA2 5059 aa1.6□□□□□ -2.15
VCAN-209ENST00000513016 KRTAP12-4P60329 112 aa1.59□□□□□ -2.16
VCAN-209ENST00000513016 MYCBP2O75592 4640 aa1.59□□□□□ -2.16
VCAN-209ENST00000513016 LCE3CQ5T5A8 94 aa1.58□□□□□ -2.16
VCAN-209ENST00000513016 COL7A1Q02388 2944 aa1.58□□□□□ -2.16
VCAN-209ENST00000513016 LRP1BQ9NZR2 4599 aa1.58□□□□□ -2.16
VCAN-209ENST00000513016 HSPG2P98160 4391 aa1.57□□□□□ -2.16
VCAN-209ENST00000513016 KMT2CQ8NEZ4 4911 aaKnown RBP1.57□□□□□ -2.16
VCAN-209ENST00000513016 SSPOA2VEC9 5147 aa1.57□□□□□ -2.16
VCAN-209ENST00000513016 RYR3Q15413 4870 aa1.56□□□□□ -2.16
VCAN-209ENST00000513016 FAT1Q14517 4588 aa1.56□□□□□ -2.16
VCAN-209ENST00000513016 VPS13DQ5THJ4 4388 aa1.56□□□□□ -2.16
VCAN-209ENST00000513016 MT1GP13640 62 aa1.55□□□□□ -2.16
VCAN-209ENST00000513016 KRTAP19-1Q8IUB9 90 aa1.55□□□□□ -2.16
VCAN-209ENST00000513016 SACSQ9NZJ4 4579 aa1.54□□□□□ -2.16
VCAN-209ENST00000513016 LRP1Q07954 4544 aaKnown RBP1.54□□□□□ -2.16
VCAN-209ENST00000513016 FAT2Q9NYQ8 4349 aa1.54□□□□□ -2.16
VCAN-209ENST00000513016 BIRC6Q9NR09 4857 aa1.53□□□□□ -2.16
VCAN-209ENST00000513016 DYNC2H1Q8NCM8 4307 aaKnown RBP1.53□□□□□ -2.16
VCAN-209ENST00000513016 APOBP04114 4563 aaKnown RBP1.53□□□□□ -2.16
VCAN-209ENST00000513016 FAT3Q8TDW7 4589 aa1.53□□□□□ -2.17
VCAN-209ENST00000513016 RNF213Q63HN8 5207 aa1.52□□□□□ -2.17
VCAN-209ENST00000513016 LCE2AQ5TA79 106 aaPredicted RBP1.52□□□□□ -2.17
VCAN-209ENST00000513016 KRTAP9-8Q9BYQ0 159 aa1.52□□□□□ -2.17
VCAN-209ENST00000513016 MT1BP07438 61 aa1.51□□□□□ -2.17
VCAN-209ENST00000513016 DNHD1Q96M86 4753 aa1.51□□□□□ -2.17
VCAN-209ENST00000513016 DNAH8Q96JB1 4490 aa1.51□□□□□ -2.17
VCAN-209ENST00000513016 KRTAP9-3Q9BYQ3 159 aa1.51□□□□□ -2.17
VCAN-209ENST00000513016 LCE2CQ5TA81 110 aa1.5□□□□□ -2.17
VCAN-209ENST00000513016 MT1XP80297 61 aa1.5□□□□□ -2.17
VCAN-209ENST00000513016 TRRAPQ9Y4A5 3859 aa1.5□□□□□ -2.17
VCAN-209ENST00000513016 KRTAP9-2Q9BYQ4 174 aa1.49□□□□□ -2.17
VCAN-209ENST00000513016 AKAP9Q99996 3911 aa1.49□□□□□ -2.17
VCAN-209ENST00000513016 CSMD3Q7Z407 3707 aa1.48□□□□□ -2.17
VCAN-209ENST00000513016 KRTAP9-6A0A140TA67 174 aa1.48□□□□□ -2.17
VCAN-209ENST00000513016 MUC2Q02817 5179 aa1.46□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP19-3Q7Z4W3 81 aa1.46□□□□□ -2.18
VCAN-209ENST00000513016 LCE3BQ5TA77 95 aa1.46□□□□□ -2.18
VCAN-209ENST00000513016 HERC2O95714 4834 aa1.46□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP19-6Q3LI70 58 aa1.45□□□□□ -2.18
VCAN-209ENST00000513016 PRKDCP78527 4128 aaKnown RBP1.45□□□□□ -2.18
VCAN-209ENST00000513016 DNAH6Q9C0G6 4158 aa1.44□□□□□ -2.18
VCAN-209ENST00000513016 PKHD1L1Q86WI1 4243 aa1.42□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP20-1Q3LI63 56 aa1.42□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP4-8A0A0G2JLE6 195 aa1.42□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP4-8Q9BYQ9 185 aa1.42□□□□□ -2.18
VCAN-209ENST00000513016 MT1LQ93083 61 aa1.41□□□□□ -2.18
VCAN-209ENST00000513016 LCE3DQ9BYE3 92 aa1.41□□□□□ -2.18
VCAN-209ENST00000513016 PKD1P98161 4303 aa1.41□□□□□ -2.18
VCAN-209ENST00000513016 KRTAP2-2Q9BYT5 123 aa1.41□□□□□ -2.18
VCAN-209ENST00000513016 ANK2Q01484 3957 aa1.4□□□□□ -2.18
VCAN-209ENST00000513016 MT3P25713 68 aa1.4□□□□□ -2.18
VCAN-209ENST00000513016 USH2AO75445 5202 aa1.4□□□□□ -2.19
VCAN-209ENST00000513016 LRP2P98164 4655 aa1.39□□□□□ -2.19
VCAN-209ENST00000513016 LCE3EQ5T5B0 92 aa1.39□□□□□ -2.19
VCAN-209ENST00000513016 DNAH3Q8TD57 4116 aa1.39□□□□□ -2.19
VCAN-209ENST00000513016 MT1EP04732 61 aa1.39□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP9-7A8MTY7 169 aa1.38□□□□□ -2.19
VCAN-209ENST00000513016 MT4P47944 62 aa1.38□□□□□ -2.19
VCAN-209ENST00000513016 KMT2DO14686 5537 aa1.37□□□□□ -2.19
VCAN-209ENST00000513016 KRTAP6-3Q3LI67 103 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms