RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 PKHD1P08F94 4074 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 LPAP08519 4548 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 TTC28Q96AY4 2481 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 CSMD3Q7Z407 3707 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 COL7A1Q02388 2944 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 TRIOO75962 3097 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 SETXQ7Z333 2677 aaKnown RBP0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 KRTAP10-4P60372 401 aaPredicted RBP0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 CFAP46Q8IYW2 2715 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 BDP1A6H8Y1 2624 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 TEP1Q99973 2627 aaKnown RBP0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 PRUNE2Q8WUY3 3088 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 COL12A1Q99715 3063 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 TLN1Q9Y490 2541 aaKnown RBP0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 SZT2Q5T011 3432 aa0.6□□□□□ -2.31
HMGB3P17-201ENST00000504195 PLECQ15149 4684 aaKnown RBP0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 EPG5Q9HCE0 2579 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 SPG11Q96JI7 2443 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 DMBT1Q9UGM3 2413 aaPredicted RBP0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 TACC2O95359 2948 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 TEX15Q9BXT5 2789 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 PDZD2O15018 2839 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 NBEAL1Q6ZS30 2694 aa0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 NSD1Q96L73 2696 aaPredicted RBP0.59□□□□□ -2.31
HMGB3P17-201ENST00000504195 FLNCQ14315 2725 aa0.59□□□□□ -2.32
HMGB3P17-201ENST00000504195 POLQO75417 2590 aa0.59□□□□□ -2.32
HMGB3P17-201ENST00000504195 USP9XQ93008 2570 aaPredicted RBP0.59□□□□□ -2.32
HMGB3P17-201ENST00000504195 FRAS1Q86XX4 4008 aa0.59□□□□□ -2.32
HMGB3P17-201ENST00000504195 RELNP78509 3460 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 WDFY3Q8IZQ1 3526 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 GCN1Q92616 2671 aaKnown RBP0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 WDFY4Q6ZS81 3184 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 VPS13AQ96RL7 3174 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 RANBP2P49792 3224 aaKnown RBP0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 FAT3Q8TDW7 4589 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 DNAH12Q6ZR08 3092 aa0.58□□□□□ -2.32
HMGB3P17-201ENST00000504195 CSMD1Q96PZ7 3565 aa0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 SONP18583 2426 aaKnown RBP0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 PIEZO1Q92508 2521 aa0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 UNC79Q9P2D8 2635 aa0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 LRP1Q07954 4544 aaKnown RBP0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 ITPR2Q14571 2701 aa0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 TLN2Q9Y4G6 2542 aa0.57□□□□□ -2.32
HMGB3P17-201ENST00000504195 CHD8Q9HCK8 2581 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 ACANP16112 2415 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 DYNC1H1Q14204 4646 aaKnown RBP0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 DCHS2Q6V1P9 2916 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 TNXBP22105 4242 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 FRYQ5TBA9 3013 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 MTORP42345 2549 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 ZFYVE26Q68DK2 2539 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 SMR3BP02814 79 aaPredicted RBP0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 PCNTO95613 3336 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 CFAP47Q6ZTR5 3102 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 ATRQ13535 2644 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 HIVEP1P15822 2718 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 CELSR3Q9NYQ7 3312 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 NBEAL2Q6ZNJ1 2754 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 MXRA5Q9NR99 2828 aa0.56□□□□□ -2.32
HMGB3P17-201ENST00000504195 ANKRD11Q6UB99 2663 aaPredicted RBP0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 GOLGB1Q14789 3259 aaKnown RBP0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 DMXL2Q8TDJ6 3036 aa0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 ZANQ9Y493 2812 aa0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 VPS13CQ709C8 3753 aa0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 CEP295Q9C0D2 2601 aa0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 HTTP42858 3142 aa0.55□□□□□ -2.32
HMGB3P17-201ENST00000504195 STAB1Q9NY15 2570 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 VCANP13611 3396 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 DNAH14Q0VDD8 3507 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 EP400Q96L91 3159 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 MT1AP04731 61 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 KRTAP19-5Q3LI72 72 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 NOTCH1P46531 2555 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 FLNAP21333 2647 aaKnown RBP0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 TENM3Q9P273 2699 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 FREM2Q5SZK8 3169 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 FBN2P35556 2912 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 BRCA2P51587 3418 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 DOPEY1Q5JWR5 2465 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 ASPMQ8IZT6 3477 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 MYO15AQ9UKN7 3530 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 MYO9AB2RTY4 2548 aa0.54□□□□□ -2.32
HMGB3P17-201ENST00000504195 SVEP1Q4LDE5 3571 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 MYO18BQ8IUG5 2567 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 PKD1L1Q8TDX9 2849 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 SPTAN1Q13813 2472 aaKnown RBP0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 C5orf42Q9H799 3197 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 STAB2Q8WWQ8 2551 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 FAT1Q14517 4588 aa0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 MKI67P46013 3256 aaKnown RBP0.53□□□□□ -2.32
HMGB3P17-201ENST00000504195 LAMA1P25391 3075 aa0.53□□□□□ -2.33
HMGB3P17-201ENST00000504195 CENPFP49454 3210 aa0.53□□□□□ -2.33
HMGB3P17-201ENST00000504195 FASNP49327 2511 aaKnown RBP0.53□□□□□ -2.33
HMGB3P17-201ENST00000504195 XIRP2A4UGR9 3374 aa0.53□□□□□ -2.33
HMGB3P17-201ENST00000504195 CSMD2Q7Z408 3487 aa0.52□□□□□ -2.33
HMGB3P17-201ENST00000504195 STARD9Q9P2P6 4700 aa0.52□□□□□ -2.33
HMGB3P17-201ENST00000504195 HRNRQ86YZ3 2850 aaPredicted RBP0.52□□□□□ -2.33
HMGB3P17-201ENST00000504195 DMXL1Q9Y485 3027 aa0.52□□□□□ -2.33
HMGB3P17-201ENST00000504195 DCHS1Q96JQ0 3298 aa0.52□□□□□ -2.33
HMGB3P17-201ENST00000504195 LAMA3Q16787 3333 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms