RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 DNAH2Q9P225 4427 aa2.86□□□□□ -1.95
CLCN3-204ENST00000504131 PKHD1L1Q86WI1 4243 aa2.85□□□□□ -1.95
CLCN3-204ENST00000504131 PKD1P98161 4303 aa2.85□□□□□ -1.95
CLCN3-204ENST00000504131 KRTAP10-6P60371 365 aaPredicted RBP2.85□□□□□ -1.95
CLCN3-204ENST00000504131 DNAH8Q96JB1 4490 aa2.84□□□□□ -1.95
CLCN3-204ENST00000504131 PKHD1P08F94 4074 aa2.84□□□□□ -1.96
CLCN3-204ENST00000504131 DNAH10Q8IVF4 4471 aa2.83□□□□□ -1.96
CLCN3-204ENST00000504131 ALMS1Q8TCU4 4167 aa2.83□□□□□ -1.96
CLCN3-204ENST00000504131 FBN3Q75N90 2809 aa2.82□□□□□ -1.96
CLCN3-204ENST00000504131 TENM2Q9NT68 2774 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 PKD1L1Q8TDX9 2849 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 DNHD1Q96M86 4753 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 LOC100996750A0A140TA64 210 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 KRTAP4-6Q9BYQ5 205 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 FAT2Q9NYQ8 4349 aa2.81□□□□□ -1.96
CLCN3-204ENST00000504131 DNAH11Q96DT5 4516 aa2.8□□□□□ -1.96
CLCN3-204ENST00000504131 TENM3Q9P273 2699 aa2.8□□□□□ -1.96
CLCN3-204ENST00000504131 STARD9Q9P2P6 4700 aa2.8□□□□□ -1.96
CLCN3-204ENST00000504131 KRTAP1-4P0C5Y4 121 aa2.79□□□□□ -1.96
CLCN3-204ENST00000504131 PLECQ15149 4684 aaKnown RBP2.78□□□□□ -1.96
CLCN3-204ENST00000504131 LCE2CQ5TA81 110 aa2.78□□□□□ -1.96
CLCN3-204ENST00000504131 TGP01266 2768 aa2.73□□□□□ -1.97
CLCN3-204ENST00000504131 SRRM2Q9UQ35 2752 aaKnown RBP2.73□□□□□ -1.97
CLCN3-204ENST00000504131 LCE2DQ5TA82 110 aaPredicted RBP2.73□□□□□ -1.97
CLCN3-204ENST00000504131 MEGF8Q7Z7M0 2845 aa2.72□□□□□ -1.97
CLCN3-204ENST00000504131 DNAH5Q8TE73 4624 aa2.71□□□□□ -1.98
CLCN3-204ENST00000504131 VPS13BQ7Z7G8 4022 aa2.71□□□□□ -1.98
CLCN3-204ENST00000504131 KMT2AQ03164 3969 aa2.7□□□□□ -1.98
CLCN3-204ENST00000504131 KRTAP10-10P60014 251 aa2.7□□□□□ -1.98
CLCN3-204ENST00000504131 SACSQ9NZJ4 4579 aa2.7□□□□□ -1.98
CLCN3-204ENST00000504131 FAT3Q8TDW7 4589 aa2.69□□□□□ -1.98
CLCN3-204ENST00000504131 HYDINQ4G0P3 5121 aa2.67□□□□□ -1.98
CLCN3-204ENST00000504131 DYNC1H1Q14204 4646 aaKnown RBP2.64□□□□□ -1.99
CLCN3-204ENST00000504131 RYR2Q92736 4967 aa2.64□□□□□ -1.99
CLCN3-204ENST00000504131 APOBP04114 4563 aaKnown RBP2.63□□□□□ -1.99
CLCN3-204ENST00000504131 HSPG2P98160 4391 aa2.61□□□□□ -1.99
CLCN3-204ENST00000504131 LCE2AQ5TA79 106 aaPredicted RBP2.61□□□□□ -1.99
CLCN3-204ENST00000504131 TNXBP22105 4242 aa2.61□□□□□ -1.99
CLCN3-204ENST00000504131 MT1HL1P0DM35 61 aa2.6□□□□□ -1.99
CLCN3-204ENST00000504131 LCE2BO14633 110 aa2.6□□□□□ -1.99
CLCN3-204ENST00000504131 KRTAP19-4Q3LI73 84 aa2.59□□□□□ -1.99
CLCN3-204ENST00000504131 LORP23490 312 aaPredicted RBP2.55□□□□□ -2
CLCN3-204ENST00000504131 KMT2CQ8NEZ4 4911 aaKnown RBP2.55□□□□□ -2
CLCN3-204ENST00000504131 KRTAP4-5Q9BYR2 181 aa2.55□□□□□ -2
CLCN3-204ENST00000504131 SPRR5A0A1B0GTR4 108 aa2.53□□□□□ -2
CLCN3-204ENST00000504131 RYR3Q15413 4870 aa2.53□□□□□ -2
CLCN3-204ENST00000504131 FAT1Q14517 4588 aa2.53□□□□□ -2.01
CLCN3-204ENST00000504131 LRP1BQ9NZR2 4599 aa2.52□□□□□ -2.01
CLCN3-204ENST00000504131 KRTAP10-4P60372 401 aaPredicted RBP2.51□□□□□ -2.01
CLCN3-204ENST00000504131 MT3P25713 68 aa2.5□□□□□ -2.01
CLCN3-204ENST00000504131 LCE3AQ5TA76 89 aa2.45□□□□□ -2.02
CLCN3-204ENST00000504131 RYR1P21817 5038 aa2.44□□□□□ -2.02
CLCN3-204ENST00000504131 KRTAP10-5P60370 271 aa2.44□□□□□ -2.02
CLCN3-204ENST00000504131 KRTAP12-3P60328 96 aa2.43□□□□□ -2.02
CLCN3-204ENST00000504131 MUC17Q685J3 4493 aa2.38□□□□□ -2.03
CLCN3-204ENST00000504131 KRTAP10-12P60413 245 aa2.38□□□□□ -2.03
CLCN3-204ENST00000504131 HERC2O95714 4834 aa2.38□□□□□ -2.03
CLCN3-204ENST00000504131 EPPK1P58107 5090 aaKnown RBP2.36□□□□□ -2.03
CLCN3-204ENST00000504131 BIRC6Q9NR09 4857 aa2.35□□□□□ -2.03
CLCN3-204ENST00000504131 LRP1Q07954 4544 aaKnown RBP2.33□□□□□ -2.04
CLCN3-204ENST00000504131 ABCA13Q86UQ4 5058 aa2.32□□□□□ -2.04
CLCN3-204ENST00000504131 KRTAP4-8Q9BYQ9 185 aa2.32□□□□□ -2.04
CLCN3-204ENST00000504131 KRTAP12-4P60329 112 aa2.31□□□□□ -2.04
CLCN3-204ENST00000504131 MYCBP2O75592 4640 aa2.29□□□□□ -2.04
CLCN3-204ENST00000504131 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.29□□□□□ -2.04
CLCN3-204ENST00000504131 LCE3CQ5T5A8 94 aa2.28□□□□□ -2.04
CLCN3-204ENST00000504131 FLGP20930 4061 aaPredicted RBP2.26□□□□□ -2.05
CLCN3-204ENST00000504131 CRCT1Q9UGL9 99 aa2.25□□□□□ -2.05
CLCN3-204ENST00000504131 MT1HP80294 61 aa2.25□□□□□ -2.05
CLCN3-204ENST00000504131 KRTAP9-2Q9BYQ4 174 aa2.24□□□□□ -2.05
CLCN3-204ENST00000504131 KRTAP10-7P60409 375 aaPredicted RBP2.24□□□□□ -2.05
CLCN3-204ENST00000504131 KIAA1109Q2LD37 5005 aa2.23□□□□□ -2.05
CLCN3-204ENST00000504131 KRTAP8-1Q8IUC2 63 aa2.21□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP4-8A0A0G2JLE6 195 aa2.2□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP19-2Q3LHN2 52 aa2.2□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP5-3Q6L8H2 238 aa2.2□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP9-6A0A140TA67 174 aa2.19□□□□□ -2.06
CLCN3-204ENST00000504131 PCLOQ9Y6V0 5065 aa2.18□□□□□ -2.06
CLCN3-204ENST00000504131 HMCN2Q8NDA2 5059 aa2.18□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP9-8Q9BYQ0 159 aa2.17□□□□□ -2.06
CLCN3-204ENST00000504131 MT2AP02795 61 aa2.17□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP4-7Q9BYR0 210 aa2.16□□□□□ -2.06
CLCN3-204ENST00000504131 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.06
CLCN3-204ENST00000504131 HERC1Q15751 4861 aa2.14□□□□□ -2.07
CLCN3-204ENST00000504131 KRTAP9-9Q9BYP9 154 aa2.14□□□□□ -2.07
CLCN3-204ENST00000504131 KRTAP9-4Q9BYQ2 154 aa2.14□□□□□ -2.07
CLCN3-204ENST00000504131 LCE1AQ5T7P2 110 aa2.13□□□□□ -2.07
CLCN3-204ENST00000504131 KRTAP4-2Q9BYR5 136 aa2.13□□□□□ -2.07
CLCN3-204ENST00000504131 PRM1P04553 51 aa2.13□□□□□ -2.07
CLCN3-204ENST00000504131 LCE5AQ5TCM9 118 aa2.12□□□□□ -2.07
CLCN3-204ENST00000504131 LPAP08519 4548 aa2.12□□□□□ -2.07
CLCN3-204ENST00000504131 SPRR2GQ9BYE4 73 aa2.11□□□□□ -2.07
CLCN3-204ENST00000504131 LRP2P98164 4655 aa2.11□□□□□ -2.07
CLCN3-204ENST00000504131 LCE3EQ5T5B0 92 aa2.1□□□□□ -2.07
CLCN3-204ENST00000504131 LCE1FQ5T754 118 aa2.1□□□□□ -2.07
CLCN3-204ENST00000504131 LCE1EQ5T753 118 aa2.09□□□□□ -2.07
CLCN3-204ENST00000504131 MT1FP04733 61 aa2.09□□□□□ -2.08
CLCN3-204ENST00000504131 KRTAP4-12Q9BQ66 201 aa2.09□□□□□ -2.08
CLCN3-204ENST00000504131 SPRR2FQ96RM1 72 aa2.08□□□□□ -2.08
CLCN3-204ENST00000504131 LCE3DQ9BYE3 92 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms